Read 31092 records
[1] "Analyzing  /scr/raf/stephens/CFDAT/050201a.mr"
[1] "Reading in data"
Read 5182 records
[1] "Approximately  35  jogs"
[1] "Fixing CO2 glitches"
Read 5182 records
[1] "Finding cylinder IDs"
[1] "Position  1    Cylinder  CC129271"
[1] "Position  2    Cylinder  JJ8174"
[1] "Position  3    Cylinder  CC129281"
[1] "Position  4    Cylinder  JJ13623"
[1] "Position  5    Cylinder  FA02360"
[1] "Position  6    Cylinder  CC129307"
[1] "Position  7    Cylinder  JJ13615"
[1] "Position  8    Cylinder  JJ16901"
[1] "Position  9    Cylinder  CC129293"
[1] "Position  10    Cylinder  JJ8550"
[1] "Position  11    Cylinder  ND12795"
[1] "Position  12    Cylinder  JJ8588"
[1] "Position  13    Cylinder  NA"
Read 13 records
LIST_KNOWN: CC129271 CC129281 CC129307 CC129293 ND12795 
LIST_UNKNOWN: JJ8174 JJ13623 FA02360 JJ13615 JJ16901 JJ8550 ND12795 
Read 171 records
Read 54 records
Read 536 records
Read 2 items
[1] "Skipping final  82  records."
[1] "Processing jog 1 at position 1"
[1] "Processing jog 2 at position 151"
[1] "Processing jog 3 at position 301"
[1] "Processing jog 4 at position 451"
[1] "Processing jog 5 at position 601"
[1] "Processing jog 6 at position 751"
[1] "Processing jog 7 at position 901"
[1] "Processing jog 8 at position 1051"
[1] "Processing jog 9 at position 1201"
[1] "Processing jog 10 at position 1351"
[1] "Processing jog 11 at position 1501"
[1] "Processing jog 12 at position 1651"
[1] "Processing jog 13 at position 1801"
[1] "Processing jog 14 at position 1951"
[1] "Processing jog 15 at position 2101"
[1] "Processing jog 16 at position 2251"
[1] "Processing jog 17 at position 2401"
[1] "Processing jog 18 at position 2551"
[1] "Processing jog 19 at position 2701"
[1] "Processing jog 20 at position 2851"
[1] "Processing jog 21 at position 3001"
[1] "Processing jog 22 at position 3151"
[1] "Processing jog 23 at position 3301"
[1] "Processing jog 24 at position 3451"
[1] "Processing jog 25 at position 3601"
[1] "Processing jog 26 at position 3751"
[1] "Processing jog 27 at position 3901"
[1] "Processing jog 28 at position 4051"
[1] "Processing jog 29 at position 4201"
[1] "Processing jog 30 at position 4351"
[1] "Processing jog 31 at position 4501"
[1] "Processing jog 32 at position 4651"
[1] "Processing jog 33 at position 4801"
[1] "Processing jog 34 at position 4951"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (1ST ESTIMATE FROM MEAN FIT)"
        X Intercept                  x2        x1                  x2        x1 
   -0.805  -395.790   703.921     2.188   375.183  -388.795     2.186   375.265 
          
 -388.843 
[1] "Screened jogs for high CO2 standard deviation:"
           [,1] [,2]         [,3]
[1,]         NA   NA           NA
[2,] 32.5642644    3 0.0215976339
[3,] 32.5955974    9 0.0292493371
[4,] 32.6008195   10 0.0231460527
[5,] 32.6060417   11 0.0240802324
[6,] 32.6112639   12 0.0587943029
[7,] 32.6373783    5 0.0209711453
[8,] 32.6739334   12 0.1447290381
[1] "Screened jogs for high O2 standard deviation:"
           [,1] [,2]       [,3]
[1,] 32.5485980   12 62.0371824
[2,] 32.6112639   12 52.0769917
[3,] 32.6739334   12 24.1381928
[1] "calculating fits"
[1] "plotting CO2 cal parameters"
[1] "plotting O2 cal parameters"
[1] "calculating final numbers"
[1] "O2SCL  O2ZERO  O2OFF  CO2SCL_SIO  CO2ZERO_SIO  CO2OFF_SIO  CO2SCL_GMD  CO2ZERO_GMD  CO2OFF_GMD (2ND ESTIMATE FROM MEAN OF ALL FITS)"
[1]   -0.811 -393.570  475.070    2.183  375.326 -387.945    2.181  375.407
[9] -388.000
[1] "plotting CO2 timeseries"
[1] "plotting O2 timeseries"
[1] "NOT ENOUGH DATA TO DO CO2 FLUSHING CORR, POS: 1"
[1] "NOT ENOUGH DATA TO DO CO2 FLUSHING CORR, POS: 2"
[1] "NOT ENOUGH DATA TO DO CO2 FLUSHING CORR, POS: 3"
[1] "NOT ENOUGH DATA TO DO CO2 FLUSHING CORR, POS: 4"
[1] "NOT ENOUGH DATA TO DO CO2 FLUSHING CORR, POS: 5"
[1] "NOT ENOUGH DATA TO DO CO2 FLUSHING CORR, POS: 6"
[1] "NOT ENOUGH DATA TO DO CO2 FLUSHING CORR, POS: 7"
[1] "NOT ENOUGH DATA TO DO CO2 FLUSHING CORR, POS: 8"
[1] "NOT ENOUGH DATA TO DO CO2 FLUSHING CORR, POS: 9"
[1] "NOT ENOUGH DATA TO DO CO2 FLUSHING CORR, POS: 10"
[1] "NOT ENOUGH DATA TO DO CO2 FLUSHING CORR, POS: 11"
[1] "NOT ENOUGH DATA TO DO O2 FLUSHING CORR, POS: 1"
[1] "NOT ENOUGH DATA TO DO O2 FLUSHING CORR, POS: 2"
[1] "NOT ENOUGH DATA TO DO O2 FLUSHING CORR, POS: 3"
[1] "NOT ENOUGH DATA TO DO O2 FLUSHING CORR, POS: 4"
[1] "NOT ENOUGH DATA TO DO O2 FLUSHING CORR, POS: 5"
[1] "NOT ENOUGH DATA TO DO O2 FLUSHING CORR, POS: 6"
[1] "NOT ENOUGH DATA TO DO O2 FLUSHING CORR, POS: 7"
[1] "NOT ENOUGH DATA TO DO O2 FLUSHING CORR, POS: 8"
[1] "NOT ENOUGH DATA TO DO O2 FLUSHING CORR, POS: 9"
[1] "NOT ENOUGH DATA TO DO O2 FLUSHING CORR, POS: 10"
[1] "NOT ENOUGH DATA TO DO O2 FLUSHING CORR, POS: 11"
[1] "plotting unknown co2"
[1] "plotting unknown o2"
[1] "plotting known co2"
[1] "plotting known o2"
[1] "plotting all variables"
[1] "plotting SP-WT slope correction"
[1] "plotting standard deviations"
[1] "plotting slopes"
[1] "plotting CO2 fits"
[1] "plotting O2 fits"
[1] "calculating switching times"
[1] "plotting co2 switching times"
[1] "plotting o2 switching times"
[1] "plotting co2 results"
[1] "plotting o2 results"
[1] "plotting average residuals"
[1] "making html"
[1] "making index html"