[1] "2025-05-13 17:30:30 MDT" options [1,] "file" "180521a" [2,] "flight" "RF13" [3,] "project" "ATOM4" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "7" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "TRUE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "full" [48,] "o2caltype" "full" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "TRUE" [64,] "icartt" "lookup" [65,] "icarttrev" "1" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "180521a" [1] "Reading in flight and plotting intervals" Read 17 records [1] "Reading in /scr/raf/stephens/AO2DAT/180521a.mr" Read 12420 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.33 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.36 seconds" [1] "New JOGEST = 2.36 seconds" [1] "New VALVE SKIP = 25 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/180521a.hr" Read 49681 records [1] "HR FILE MATCHES" [1] "Converting hrdata statout" [1] "Tue May 13 05:30:30 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30762 description: HS CO2 = 400.74 O2 = -585.8" [1] "position 2 cylinder OK30768 description: LS CO2 = 423.76 O2 = -829.1" [1] "position 3 cylinder OK30772 description: LT CO2 = 393.41 O2 = -581.2" [1] "position 4 cylinder OK30764 description: WT CO2 = 405.24 O2 = -767.2" [1] "position 5 cylinder OK30769 description: LP CO2 = 408.97 O2 = -881.3" [1] 400.7440 423.7614 393.4111 405.2395 408.9685 [1] -585.7772 -829.1436 -581.2279 -767.2352 -881.3289 [1] "Nominal linear calibrations:" [1] "co2scl = 0.872 co2off = 58.78 o2scla = -0.055 o2offa = -132.1" [1] "(dV/V)/(dXO2/XO2) = -3.807" [1] "(dV/V)/d(O2/N2) = -3.01" [1] "Reading in very high resolution timeseries" Read 248400 records [1] 248400 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 05:30:31 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 05:30:33 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.01" [1] "o2scaleavenew_drelVdrelP = -3.807" [1] "median(o2scalenew) = -3.016" [1] "Empirical dV/V vs dP/P relationship =-4.107, r^2 =0.62, damping =1.079" [1] "Tue May 13 05:30:33 PM MDT 2025 done redoing corrections" [1] "NON-INTEGER NGAS IN JOGAVES AT:" [1] 11788 $icochar [1] "0" "0" "23:40:01" "16:37:34" "141.700010" [6] "141.719341" "141.736842" "141.770825" "141.794023" "141.820477" [11] "141.843675" "141.868501" "141.887833" "141.919984" "141.953154" [16] "141.970654" "23:10:00" $ecochar [1] "367" "16:37:34" "367" "23:40:01" "141.719341" [6] "141.739894" "141.770825" "141.797075" "141.820477" "141.846320" [11] "141.868501" "141.891089" "141.919984" "141.959869" "141.970654" [16] "141.984695" "23:25:00" $flag [1] "all" "LP" "LP" "flight" "a" "b" "c" "d" [9] "e" "f" "g" "h" "i" "j" "k" "l" [17] "MMS" $ico2 [1] 0.0000 0.0000 141.9861 141.6928 141.7000 141.7193 141.7368 141.7708 [9] 141.7940 141.8205 141.8437 141.8685 141.8878 141.9200 141.9532 141.9707 [17] 141.9653 $eco2 [1] 367.0000 141.6928 367.0000 141.9861 141.7193 141.7399 141.7708 141.7971 [9] 141.8205 141.8463 141.8685 141.8911 141.9200 141.9599 141.9707 141.9847 [17] 141.9757 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 11787 11787 141.9861 8.072827 -0.00028745 0.00999545 0.00999545 11787 11788 11788 141.9861 8.069097 -0.00137955 0.00999940 0.00999940 11788 11789 11789 141.9862 8.078136 -0.00057985 0.00999280 0.00999280 11789 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 11787 10.5 1.00 42.00 28770.50 -1 8.077254 8.077133 11788 10.5 4.75 42.75 7201.75 1 8.073995 8.073417 11789 10.5 6.00 43.00 25.50 -1 8.082692 8.082449 vuvsigpdprcorr 11787 8.072947 11788 8.069230 11789 8.078261 [1] 0.9860997 0.9861267 0.9861532 [,1] [,2] [,3] [1,] 0.986111 -1 1 [2,] 0.986120 1 1 [3,] 0.986126 1 6 [4,] 0.986132 1 6 [5,] 0.986138 1 6 [6,] 0.986147 -1 6 [7,] 0.986153 -1 6 [8,] 0.986158 -1 6 [9,] 0.986164 -1 6 [10,] 0.986174 1 6 [11,] 0.986180 1 6 [12,] 0.986186 1 6 [13,] 0.986192 1 6 [1] "NON-INTEGER NGASNUM IN JOGAVES AT:" [1] 11788 $icochar [1] "0" "0" "23:40:01" "16:37:34" "141.700010" [6] "141.719341" "141.736842" "141.770825" "141.794023" "141.820477" [11] "141.843675" "141.868501" "141.887833" "141.919984" "141.953154" [16] "141.970654" "23:10:00" $ecochar [1] "367" "16:37:34" "367" "23:40:01" "141.719341" [6] "141.739894" "141.770825" "141.797075" "141.820477" "141.846320" [11] "141.868501" "141.891089" "141.919984" "141.959869" "141.970654" [16] "141.984695" "23:25:00" $flag [1] "all" "LP" "LP" "flight" "a" "b" "c" "d" [9] "e" "f" "g" "h" "i" "j" "k" "l" [17] "MMS" $ico2 [1] 0.0000 0.0000 141.9861 141.6928 141.7000 141.7193 141.7368 141.7708 [9] 141.7940 141.8205 141.8437 141.8685 141.8878 141.9200 141.9532 141.9707 [17] 141.9653 $eco2 [1] 367.0000 141.6928 367.0000 141.9861 141.7193 141.7399 141.7708 141.7971 [9] 141.8205 141.8463 141.8685 141.8911 141.9200 141.9599 141.9707 141.9847 [17] 141.9757 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 11787 11787 141.9861 8.072827 -0.00028745 0.00999545 0.00999545 11787 11788 11788 141.9861 8.069097 -0.00137955 0.00999940 0.00999940 11788 11789 11789 141.9862 8.078136 -0.00057985 0.00999280 0.00999280 11789 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 11787 10.5 1.00 42.00 28770.50 -1 8.077254 8.077133 11788 10.5 4.75 42.75 7201.75 1 8.073995 8.073417 11789 10.5 6.00 43.00 25.50 -1 8.082692 8.082449 vuvsigpdprcorr 11787 8.072947 11788 8.069230 11789 8.078261 [1] 0.9860997 0.9861267 0.9861532 [,1] [,2] [,3] [1,] 0.986111 -1 1 [2,] 0.986120 1 1 [3,] 0.986126 1 6 [4,] 0.986132 1 6 [5,] 0.986138 1 6 [6,] 0.986147 -1 6 [7,] 0.986153 -1 6 [8,] 0.986158 -1 6 [9,] 0.986164 -1 6 [10,] 0.986174 1 6 [11,] 0.986180 1 6 [12,] 0.986186 1 6 [13,] 0.986192 1 6 [1] "JOGAVES DOES NOT MATCH" [1] "MASKING 20 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 05:31:06 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 3059938.215648 SECONDS" [1] "Tue May 13 05:31:06 PM MDT 2025 done recreating mr o2diffs" [1] "Removed 1 medium-rate record(s) with accumulation errors" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) -32298.72 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 28213.61 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 28246.079 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -40.479 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 3 [1] 73 [1] 101 [1] 101 [1] 104 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 70 141.6658 -335.044552 1045058.3 -1 [2,] 132 141.6674 -513.145512 1045119.7 -1 [3,] 133 141.6675 -274.914101 1045657.0 1 [4,] 134 141.6675 18.946039 1045707.6 -1 [5,] 136 141.6676 269.091547 1045956.2 -1 [6,] 196 141.6692 284.086014 1046278.9 -1 [7,] 197 141.6692 24.592631 1045979.9 1 [8,] 198 141.6692 -271.578411 1045669.5 -1 [9,] 200 141.6693 -504.671551 1045454.4 -1 [10,] 260 141.6709 -544.515831 1045652.9 -1 [11,] 261 141.6709 -339.033864 1046228.3 1 [12,] 262 141.6710 -60.455277 1046197.2 -1 [13,] 264 141.6710 288.902809 1046539.7 -1 [14,] 386 141.6743 282.692956 1046801.9 -1 [15,] 387 141.6744 75.306956 1046500.2 1 [16,] 388 141.6744 -177.840261 1046284.7 -1 [17,] 390 141.6745 -454.301942 1046015.9 -1 [18,] 450 141.6761 -419.035302 1046000.8 -1 [19,] 451 141.6761 -112.519876 1046428.5 1 [20,] 452 141.6761 259.096538 1046712.5 -1 [21,] 642 141.6813 327.970719 1046498.1 -1 [22,] 643 141.6813 94.347143 1046148.0 1 [23,] 644 141.6814 -188.366343 1045915.2 -1 [24,] 646 141.6814 -459.369271 1045641.3 -1 [25,] 706 141.6831 -511.574304 1045388.6 -1 [26,] 707 141.6831 -225.095374 1045915.3 1 [27,] 708 141.6831 48.462725 1045991.7 -1 [28,] 836 141.6866 246.998029 1045638.2 -1 [29,] 1024 141.6917 256.138950 1042833.3 -1 [30,] 1025 141.6917 -74.799125 1042532.0 1 [31,] 1026 141.6918 -428.034786 1042047.2 -1 [32,] 2086 141.7214 -304.059486 1001913.0 -1 [33,] 2092 141.7215 -525.361659 1001501.0 -1 [34,] 2152 141.7232 -421.414785 999765.3 -1 [35,] 2153 141.7232 -81.081033 1000143.3 1 [36,] 2154 141.7232 240.117467 1000366.5 -1 [37,] 2216 141.7249 44.737865 998450.6 -1 [38,] 3354 141.7561 -216.125744 995754.3 -1 [39,] 3360 141.7562 111.291864 996056.4 -1 [40,] 3422 141.7579 248.104972 995651.6 -1 [41,] 3423 141.7580 -30.177235 995388.2 1 [42,] 3424 141.7580 -342.992305 995012.9 -1 [43,] 4510 141.7877 -178.628422 1005111.6 -1 [44,] 4516 141.7879 -514.555824 1004785.4 -1 [45,] 4576 141.7895 -532.176367 1004716.1 -1 [46,] 4577 141.7896 -291.667820 1005240.6 1 [47,] 4578 141.7896 -8.154129 1005271.0 -1 [48,] 4580 141.7896 228.010011 1005476.1 -1 [49,] 5582 141.8168 -185.144662 1001085.0 -1 [50,] 5588 141.8170 212.608224 1001465.1 -1 [51,] 5650 141.8187 121.678034 1000812.8 -1 [52,] 5651 141.8187 -235.251071 1000698.8 1 [53,] 5652 141.8188 -481.803924 1000191.5 -1 [54,] 5780 141.8222 -15.081945 998918.3 -1 [55,] 7106 141.8585 -200.260774 1000391.7 -1 [56,] 7174 141.8603 -536.712411 1000839.8 -1 [57,] 7175 141.8604 -212.579584 1001382.9 1 [58,] 7176 141.8604 109.174868 1001525.9 -1 [59,] 8628 141.9002 -213.359682 994126.5 -1 [60,] 8634 141.9003 227.728454 994683.9 -1 [61,] 8694 141.9020 268.075937 995744.0 -1 [62,] 8695 141.9020 -19.035254 995500.0 1 [63,] 8696 141.9020 -333.110183 995157.8 -1 [64,] 8760 141.9038 -22.772618 996473.4 -1 [65,] 10156 141.9418 -230.356621 1000833.0 -1 [66,] 10162 141.9420 -461.002848 1000545.5 -1 [67,] 10224 141.9437 -555.039803 999879.6 -1 [68,] 10225 141.9437 -321.495804 1000423.8 1 [69,] 10226 141.9437 -31.763953 1000416.9 -1 [70,] 10228 141.9438 234.945109 1000633.6 -1 [71,] 10288 141.9455 273.098658 1000310.2 -1 [72,] 10289 141.9455 -43.204879 1000036.6 1 [73,] 10290 141.9455 -395.358560 999617.5 -1 [74,] 11786 141.9861 434.735556 998880.9 -1 [75,] 11787 141.9861 776.773644 998397.8 1 [76,] 11788 141.9862 1155.708985 999540.1 -1 [77,] 11789 141.9862 1502.951513 998326.4 1 [78,] 11790 141.9862 1772.668349 1000099.6 -1 [79,] 11792 141.9863 2077.926904 1000350.8 -1 [80,] 11794 141.9863 1998.498474 1000213.3 -1 [81,] 11795 141.9863 1806.923036 998203.5 1 [82,] 11796 141.9864 1494.604647 999660.4 -1 [83,] 11797 141.9864 1203.944686 998174.2 1 [84,] 11798 141.9864 938.785303 999085.5 -1 [85,] 11800 141.9865 539.560890 998722.5 -1 [86,] 11808 141.9867 534.662177 998918.1 -1 [87,] 11809 141.9867 980.755502 998359.1 1 [88,] 11810 141.9868 1430.491022 999835.1 -1 [89,] 11812 141.9868 1857.712754 1000282.2 -1 [90,] 12220 141.9978 156.247670 999655.0 -1 [91,] 12221 141.9978 -166.159903 999526.0 1 [92,] 12222 141.9979 -472.964319 999058.8 -1 [93,] 12352 142.0014 -481.697663 1002139.8 -1 [94,] 12353 142.0014 -250.228391 1002648.2 1 [95,] 12354 142.0015 -34.916125 1002650.8 -1 [96,] 12411 142.0030 -521.654231 1004525.6 1 [97,] 12412 142.0030 36.611130 1004598.0 -1 [98,] 12413 142.0030 2402.064400 1004609.4 1 [99,] 12414 142.0031 9.141223 1004678.5 -1 [100,] 12415 142.0031 -7509.883340 1004674.0 1 [101,] 12416 142.0031 6279.184708 1011250.4 -1 [102,] 12417 142.0032 67280.166570 1004783.5 1 [103,] 12418 142.0032 152654.525397 1201684.8 -1 [104,] 12419 142.0032 331032.196228 1006307.1 1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 1605 141.7079 405.569 [2,] 5505 141.8148 101613.800 [3,] 9097 141.9130 1020903.000 [4,] 12416 142.0031 372.743 [5,] 12417 142.0032 330.246 [6,] 12418 142.0032 296.537 [7,] 12419 142.0032 255.778 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) -260.657 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 45.323 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 23.96 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -40.479 PER MEG" [1] "Screened 5 O2 and CO2 values when pdsp not controlling" [1] "Screened 0 O2 values when pdo2 not controlling" [1] 400.7440 423.7614 393.4111 405.2395 408.9685 [1] -585.7772 -829.1436 -581.2279 -767.2352 -881.3289 [1] "Nominal linear calibrations:" [1] "co2scl = 0.872 co2off = 58.78 o2scla = -0.055 o2offa = -132.1" [1] "(dV/V)/(dXO2/XO2) = -3.809" [1] "(dV/V)/d(O2/N2) = -3.012" [1] "Finding cal and sample periods" [1] "Median Cal: 2.46 minutes" [1] "Average Cal: 2.46 minutes" [1] "Shortest Cal: 2.38 minutes" [1] "Longest Cal: 5 minutes" [1] "Removed 1 calibration period(s) with less than 30 seconds of data" [1] "at: 43" [1] "Reading in aircraft data" [1] "Reading /scr/raf/stephens/HUMERGE/ATOM4/MMS/MMS-1HZ_DC8_20180521_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 17 items Read 17 items Read 1 item Read 1 item Read 18 items Read 443160 items [1] "Reading /scr/raf/stephens/HUMERGE/ATOM4/MMS/MMS-20Hz_DC8_20180521_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 25 items Read 25 items Read 1 item Read 1 item Read 26 items Read 12819222 items [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.00518" [1] "HS CO2 vs. PACAB: m = -0.00588, r^2 = 0.72" [1] "LS CO2 vs. PACAB: m = -0.00448, r^2 = 0.79" [1] "HS+LS LIH2O vs. PACAB: m = -7.52e-06" [1] "HS LIH2O vs. PACAB: m = -2.64e-05, r^2 = 0.32" [1] "LS LIH2O vs. PACAB: m = 1.13e-05, r^2 = 0.05" [1] "HS+LS CO2 vs. LIH2O: m = 55.8" [1] "HS CO2 vs. LIH2O: m = 89, r^2 = 0.29" [1] "LS CO2 vs. LIH2O: m = 22.6, r^2 = 0.04" [1] "APCO2 vs. PACAB: m = 0.00308, r^2 = 0" [1] "Correcting for PCAB effect on LI840 using average of HS and LS fits = -0.00518" [1] "HS+LS CO2 vs. PACAB postcorr: m = -0.000269" [1] "HS CO2 vs. PACAB postcorr: m = -0.00147, r^2 = 0.13" [1] "LS CO2 vs. PACAB postcorr: m = 0.000935, r^2 = 0.11" [1] "HS+LS LIH2O vs. PACAB postcorr: m = 2.9e-19" [1] "HS LIH2O vs. PACAB postcorr: m = -1.88e-05, r^2 = 0.19" [1] "LS LIH2O vs. PACAB postcorr: m = 1.88e-05, r^2 = 0.12" [1] "HS+LS CO2 vs. LIH2O postcorr: m = 23.9" [1] "HS CO2 vs. LIH2O postcorr: m = 19.2, r^2 = 0.05" [1] "LS CO2 vs. LIH2O postcorr: m = 28.7, r^2 = 0.13" [1] "APCO2 vs. PACAB postcorr: m = 0.00849, r^2 = 0.03" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 0.0163" [1] "HS O2 vs. PACAB: m = 0.0347, r^2 = 0.11" [1] "LS O2 vs. PACAB: m = -0.00214, r^2 = 0" [1] "HS+LS O2 vs. LIH2O: m = -820" [1] "HS O2 vs. LIH2O: m = -1620, r^2 = 0.46" [1] "LS O2 vs. LIH2O: m = -20.9, r^2 = 0" [1] "HS+LS O2 vs. PAO2: m = -9.14" [1] "HS O2 vs. PAO2: m = -15, r^2 = 0.9" [1] "LS O2 vs. PAO2: m = -3.27, r^2 = 0.09" [1] "HS+LS O2 vs. TPBOX: m = 2.83" [1] "HS O2 vs. TPBOX: m = 3.89, r^2 = 0.7" [1] "LS O2 vs. TPBOX: m = 1.77, r^2 = 0.3" [1] "APO vs. PACAB: m = -0.114, r^2 = 0.03" [1] "APO vs. PAO2: m = -53.1, r^2 = 0.37" [1] "APO vs. TPBOX: m = 15.7, r^2 = 0.18" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 0.567, r^2 = 0.29" [1] "LS CO2 vs. LiCor Cell P: m = 1.13, r^2 = 0.68" [1] "HS CO2 vs. CO2 Vol P: m = 0.729, r^2 = 0.74" [1] "LS CO2 vs. CO2 Vol P: m = 0.762, r^2 = 0.71" [1] "HS CO2 vs. SLOPE: m = -0.147, r^2 = 0" [1] "LS CO2 vs. SLOPE: m = 1.27, r^2 = 0.3" [1] "HS O2 vs. O2 Vol P: m = -13, r^2 = 0.71" [1] "LS O2 vs. O2 Vol P: m = -1.16, r^2 = 0" [1] "HS O2 vs. O2 Cell T: m = 5.85, r^2 = 0.55" [1] "LS O2 vs. O2 Cell T: m = 0.238, r^2 = 0" [1] "HS O2 vs. CO2 Vol P: m = -13.7, r^2 = 0.63" [1] "LS O2 vs. CO2 Vol P: m = -3.74, r^2 = 0.04" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = 8.69, r^2 = 0.05" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = -0.0587, r^2 = 0.01" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -13.7, r^2 = 0.63" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -3.74, r^2 = 0.04" [1] "HS O2 vs. LIH2O: m = -1160, r^2 = 0.27" [1] "LS O2 vs. LIH2O: m = 619, r^2 = 0.14" [1] "HS O2 vs. SLOPE: m = 0.524, r^2 = 0.22" [1] "LS O2 vs. SLOPE: m = -0.511, r^2 = 0.48" [1] "HS CO2 vs. Time: m = 20.301, r^2 = 0.89" [1] "LS CO2 vs. Time: m = 20.177, r^2 = 0.88" [1] "HS CO2 vs. Cylinder T: m = 1.869, r^2 = 0.28" [1] "LS CO2 vs. Cylinder T: m = 2.179, r^2 = 0.298" [1] "HS CO2 vs. Regulator T: m = 0.026, r^2 = 0" [1] "LS CO2 vs. Regulator T: m = 0.013, r^2 = 0" [1] "HS CO2 vs. Ref. Volumes T: m = 0.155, r^2 = 0.03" [1] "LS CO2 vs. Ref. Volumes T: m = 0.447, r^2 = 0.127" [1] "HS CO2 vs. Manifold T: m = -0.131, r^2 = 0.17" [1] "LS CO2 vs. Manifold T: m = -0.194, r^2 = 0.242" [1] "HS CO2 vs. Pump Box T: m = -0.071, r^2 = 0.1" [1] "LS CO2 vs. Pump Box T: m = -0.118, r^2 = 0.137" [1] "HS O2 vs. Cylinder T: m = 2.978, r^2 = 0" [1] "LS O2 vs. Cylinder T: m = -4.521, r^2 = 0.003" [1] "HS O2 vs. Regulator T: m = 4.581, r^2 = 0.14" [1] "LS O2 vs. Regulator T: m = 0.44, r^2 = 0.001" [1] "HS O2 vs. Ref. Volumes T: m = 5.21, r^2 = 0.08" [1] "LS O2 vs. Ref. Volumes T: m = -5.264, r^2 = 0.044" [1] "HS O2 vs. Manifold T: m = 5.193, r^2 = 0.65" [1] "LS O2 vs. Manifold T: m = 0.579, r^2 = 0.005" [1] "HS O2 vs. Pump Box T: m = 3.538, r^2 = 0.58" [1] "LS O2 vs. Pump Box T: m = 1.013, r^2 = 0.026" [1] "HS CO2 vs. WT P: m = -0.002, r^2 = 0.13" [1] "LS CO2 vs. WT P: m = 0, r^2 = 0" [1] "HS CO2 vs. SP P: m = -0.00156, r^2 = 0.13" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.074, r^2 = 0.29" [1] "HS CO2 vs. SP P comb with PACAB: m = -0.08, r^2 = 0.29" [1] "LS CO2 vs. SP P: m = 0.000685, r^2 = 0.07" [1] "LS CO2 vs. PACAB comb with SP P: m = -0.005, r^2 = 0.02" [1] "LS CO2 vs. SP P comb with PACAB: m = 0.005, r^2 = 0.02" [1] "HS CO2 vs. WT FL: m = -0.104, r^2 = 0.17" [1] "LS CO2 vs. WT FL: m = -0.117, r^2 = 0.146" [1] "HS CO2 vs. SP FL: m = 0.038, r^2 = 0.05" [1] "LS CO2 vs. SP FL: m = -0.019, r^2 = 0.012" [1] "HS O2 vs. SLPDIFF: m = 0.225, r^2 = 0.06" [1] "LS O2 vs. SLPDIFF: m = 0.053, r^2 = 0.001" [1] "HS O2 vs. WT P: m = 0.047, r^2 = 0.17" [1] "LS O2 vs. WT P: m = -0.01, r^2 = 0.007" [1] "HS O2 vs. SP P: m = 0.05, r^2 = 0.19" [1] "LS O2 vs. SP P: m = -0.012, r^2 = 0.013" [1] "HS O2 vs. WT FL: m = 3.861, r^2 = 0.55" [1] "LS O2 vs. WT FL: m = 0.005, r^2 = 0" [1] "HS O2 vs. SP FL: m = -0.63, r^2 = 0.03" [1] "LS O2 vs. SP FL: m = 0.09, r^2 = 0.001" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): 77.45, 56.71" [1] "Empirical LP O2 lag flow(s): 101.7, 101.6" [1] "Empirical LP CO2 lag time(s): 58.01, -1.79" [1] "Empirical LP CO2 lag flow(s): 101.7, 101.6" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.43" [1] "Median all HS CO2 SD = 0.43" [1] "Median all LS CO2 SD = 0.45" [1] "Median all LT CO2 SD = 0.4" [1] "Median all WT CO2 SD = 0.42" [1] "Median all HS or LS CO2 SD = 0.43" [1] "Median all cal O2 SD = 2.25" [1] "Median all HS O2 SD = 2.11" [1] "Median all LS O2 SD = 2.11" [1] "Median all LT O2 SD = 2.42" [1] "Median all WT O2 SD = 2.07" [1] "Median all HS or LS O2 SD = 2.11" [1] "Median all cal CO2 Slope = 0.05" [1] "Median all HS CO2 Slope = 0.08" [1] "Median all LS CO2 Slope = 0.05" [1] "Median all LT CO2 Slope = 0" [1] "Median all WT CO2 Slope = 0.06" [1] "Median all HS or LS CO2 Slope = 0.06" [1] "Median all cal O2 Slope = 0.52" [1] "Median all HS O2 Slope = 0.51" [1] "Median all LS O2 Slope = 2.12" [1] "Median all LT O2 Slope = 0.23" [1] "Median all WT O2 Slope = -0.41" [1] "Median all HS or LS O2 Slope = 0.89" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 5.8 per meg" [1] "Initial O2 Calibration Offset = -8.96 per meg" [1] "SD of O2 Calibration (post-takeoff) = 2.19 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = -9.24 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = -10.76 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using ATom2 inlet volumes" [1] "before any lag: 57358.71 86677.17" [1] "Time lag adjustments = 7 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 52.5 at 101.1 sccm" [1] "Median O2 delay + tlagff = 53.3 at 101.1 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 50.2 at 101.1 sccm" [1] "Median O2 delay from 3-way + tlagff = 51 at 101.1 sccm" [1] "after calc and ff lag: 57303.16 86633.7" [1] "2025-05-13 17:31:49 MDT" [1] "Calculating 1-sec interpolated values" [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] -34.33628254 -34.43154513 -35.13946893 -35.93194924 -37.61109707 [6] -37.61109707 -28.12869134 -27.22072591 -25.47757460 -25.47757460 [11] -23.47029814 -22.40988299 -22.40988299 -19.25015134 -18.02166949 [16] -18.03197148 -18.10596831 -18.12666834 -24.00801491 -22.31234678 [21] -22.31234678 -22.55876958 -25.73638206 -25.99530023 -26.38536569 [26] -26.38536569 -28.12426595 -28.71849290 -28.71849290 -25.51299484 [31] -22.48011657 -23.79840199 -22.77150979 -22.77150979 -21.65565478 [36] -18.41134516 -18.41134516 -18.00751590 -17.57619796 -23.13960479 [41] -18.79078072 -18.41848661 -18.85368206 -18.47024355 -18.47024355 [46] -16.65793249 -15.69159830 -19.27410785 -15.47789466 -12.93627988 [51] -12.93627988 -28.38272379 -28.38272379 -32.82760233 -35.28574328 [56] -23.36476625 -26.51125434 -26.51125434 -24.73964149 -18.97305660 [61] -18.86180896 -18.95835131 -21.08103423 -17.12428725 -18.70714711 [66] -19.40581439 -19.59725919 -16.88877148 -16.88877148 -13.56443660 [71] -11.68211997 -18.53127715 -23.27023287 -23.50159878 -22.66644068 [76] -14.88459817 -12.11696086 -8.59221411 -7.33641864 -6.61383363 [81] -13.35871101 -13.57339945 -7.48383318 -6.03790101 -15.67239069 [86] -16.91694881 -16.57018553 -16.07786663 -11.46456289 -9.62626052 [91] -8.56233321 -8.56233321 -2.76452358 -4.97201447 -7.40267904 [96] -7.58254681 -11.61732502 -12.19405045 -13.33326271 -13.33326271 [101] -9.88158112 -12.36096392 -13.36524370 -13.36524370 -18.45672741 [106] -18.45672741 -23.57484313 -25.85838704 -25.97808858 -25.99923701 [111] -25.99923701 -20.26323305 -11.69969561 -7.62618056 -7.62618056 [116] -7.62618056 -9.99572476 -13.30226830 -16.68554860 -16.68554860 [121] -15.83158509 -13.61972063 -13.61972063 -8.51684138 -5.62963337 [126] -9.91334639 -9.91334639 -9.91334639 -11.04382487 -14.49445744 [131] -14.49445744 -14.49445744 -14.49445744 -9.81902357 -9.29523204 [136] -9.11064572 -9.11064572 -7.62602550 -4.92794557 -4.00693374 [141] -4.00693374 -12.14589745 -12.58634771 -12.75795441 -12.75795441 [146] -5.13299908 -3.43838449 -3.43838449 -3.43838449 -9.66956040 [151] -16.01053275 -16.94968224 -16.94968224 -15.32913540 -11.33575008 [156] -8.28517657 -8.28517657 -3.87220657 1.27573157 -0.02086218 [161] -0.46935843 -0.11004773 9.40970149 9.77283541 17.62499150 [166] 18.90169190 10.96759223 10.96759223 10.84385927 1.21335599 [171] -0.62605203 -0.68492043 -0.68492043 2.17341019 6.50299469 [176] 9.59817118 9.59817118 9.59817118 -1.22896762 -3.52236380 [181] -3.52236380 -3.52236380 5.03715453 5.08671003 5.08671003 [186] 6.82450123 4.54983766 4.54983766 5.55880361 7.36853432 [191] 1.99499708 -0.66702635 -1.02570697 -1.02570697 2.44405677 [196] 3.90376970 2.68914879 0.78871523 1.97974715 11.29253940 [201] 13.89212053 13.89212053 10.07115722 3.89246767 3.89246767 [206] 3.89246767 3.67187156 7.33530045 7.33530045 7.33530045 [211] 8.85561128 11.96313843 11.96313843 11.96313843 11.80451841 [216] 10.45536239 10.21022380 10.21022380 10.21022380 -4.87911249 [221] -4.87911249 -4.87911249 0.03630526 11.28596041 13.08247884 [226] 13.08247884 8.12400707 -0.28315648 -1.04972667 -1.04972667 [231] -0.42586455 -1.73554390 -2.69210548 -2.69210548 -2.86549415 [236] -4.17893836 -7.43634303 -7.43634303 -7.43634303 -7.43634303 [241] NA NA NA NA -3.95926000 [246] -2.90972252 -0.55185305 -0.23366594 -8.92427156 -8.92427156 [251] -10.04653687 -11.79469589 -0.44617072 -0.81302209 -0.81302209 [256] -0.81302209 -3.00655382 1.61405623 4.78485311 4.78485311 [261] 3.34879452 3.26456196 -2.86269006 -4.25000704 -4.01455883 [266] -3.69142794 -3.69142794 -1.40584819 -0.40219717 -4.76963361 [271] -4.76963361 -4.76963361 -7.22872404 -10.29249607 -12.51654451 [276] -12.51654451 -12.25398234 -6.21035206 0.10937891 0.10937891 [281] 0.10937891 -1.22788564 -2.55632221 -2.88429018 -2.88429018 [286] -6.21359721 -5.57808546 -4.78390542 -4.65550749 2.44111869 [291] 2.44111869 1.88744762 0.76564653 -8.06680024 -8.06680024 [296] -8.06680024 -8.06680024 -2.43824904 -2.24009566 -2.24009566 [301] -2.24009566 0.15854294 -0.54796594 -0.54796594 -0.54796594 [306] -2.72781363 2.07478602 2.41331965 2.41331965 3.95129342 [311] 5.83959879 5.54041763 5.28680880 6.12006774 9.65978043 [316] 9.65978043 7.20805642 1.65057373 [1] 80.31523 81.98183 83.63509 85.40692 87.55893 89.52009 91.60787 [8] 94.21211 96.97134 99.71188 103.08731 106.25478 109.03023 112.25948 [15] 115.13568 118.21109 120.99025 124.03021 126.91765 130.26332 133.37508 [22] 136.57761 139.56477 142.81766 145.74588 148.80688 152.57109 155.61676 [29] 158.86051 161.68472 164.73112 168.16139 170.91320 174.10152 176.94664 [36] 180.21584 183.16801 186.29865 189.16884 192.12473 195.01843 198.06448 [43] 200.92132 203.55932 206.84437 209.83420 212.77191 215.43841 218.02078 [50] 221.24905 223.82875 227.26057 230.06620 232.65125 235.20637 238.53066 [57] 241.21382 244.07695 246.85174 249.61487 251.92499 255.06905 257.74255 [64] 260.53826 263.36159 266.39759 269.17705 272.07416 274.57038 277.44305 [71] 279.97466 282.47405 285.44810 287.80156 290.36011 293.10554 296.04803 [78] 298.53880 301.03073 304.21335 307.08400 310.07283 313.30396 315.87840 [85] 319.56458 322.89995 325.86805 328.54809 330.71519 332.46379 334.02570 [92] 335.94794 337.69239 339.33637 341.04624 342.71449 344.56703 346.40866 [99] 348.14029 349.67129 351.79420 353.20830 354.35536 355.73573 357.10093 [106] 358.28050 359.40769 360.83226 361.81493 363.20572 364.53239 365.88307 [113] 367.05660 368.37205 369.46785 370.60138 371.67856 372.81536 373.92994 [120] 375.11603 376.33699 377.48703 378.47581 379.68822 380.77145 382.35801 [127] 383.45524 384.64582 385.80641 387.03177 388.10091 389.44441 390.53615 [134] 391.81177 393.13355 394.55438 396.07582 397.56218 399.10901 400.60771 [141] 402.22371 403.84285 405.32937 407.02969 408.34703 410.08232 411.57182 [148] 413.09194 414.63242 416.12064 417.88779 419.44711 420.93496 422.01306 [155] 423.42148 424.67397 425.79717 427.08001 428.18259 429.37548 430.52174 [162] 431.65782 432.71856 434.04310 435.20571 436.46568 437.67904 438.80393 [169] 440.01936 441.16356 442.33152 443.79800 445.05508 446.27184 447.55880 [176] 449.00306 450.29193 451.60531 452.86774 454.18741 455.73124 457.19658 [183] 458.67690 460.38223 462.12967 463.80377 465.54960 467.42662 469.36938 [190] 471.07134 473.34389 475.46578 477.48316 479.51998 481.60417 483.56601 [197] 485.69525 487.61557 489.59266 491.87829 493.79593 495.51833 497.06188 [204] 498.47555 499.87203 501.11882 502.39029 503.63602 504.77062 505.90890 [211] 507.06901 508.32068 509.53212 510.83413 511.91918 513.35460 514.66897 [218] 516.02163 517.16126 518.67354 519.93604 521.32847 522.68326 523.90884 [225] 525.48816 526.93216 528.14649 529.59609 530.98962 532.31159 533.61310 [232] 534.89385 535.78098 536.85339 537.77602 538.68746 539.53808 540.40930 [239] 541.20071 542.01876 542.85222 543.70576 544.59409 545.61252 546.49099 [246] 547.46292 548.37082 549.29258 550.11947 551.37384 552.20470 553.05566 [253] 553.86610 554.74746 555.56481 556.52054 557.36485 558.19223 559.03870 [260] 560.02301 560.96950 561.97486 562.94221 563.89549 564.74174 565.68421 [267] 566.50794 567.37978 568.30284 569.19842 570.15577 571.07829 571.95924 [274] 572.91273 573.94290 574.95512 575.85790 576.87791 577.81292 578.79297 [281] 579.75819 580.74400 581.68223 582.73466 583.69568 584.71729 585.54195 [288] 586.47984 587.36481 588.35109 589.12584 590.09547 590.89233 591.86355 [295] 592.61471 593.46830 594.41009 595.40618 596.37456 597.40280 598.28289 [302] 599.25546 600.05793 600.96301 601.71502 602.74726 603.56441 604.35762 [309] 605.12222 606.12196 606.90543 607.74023 608.61742 609.45907 610.21415 [316] 611.02936 611.85816 612.76800 [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1805/AO2_DC8_20180521_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 98484 items [1] 13 2463 24621 [1] "done reading AO2" [1] 2018 2018 2018 2018 2018 2018 [1] 114 114 114 114 114 114 [1] 53100 53110 53120 53130 53140 53150 [1] "2018-04-24 14:45:00 UTC" "2018-04-24 14:45:10 UTC" [3] "2018-04-24 14:45:20 UTC" "2018-04-24 14:45:30 UTC" [5] "2018-04-24 14:45:40 UTC" "2018-04-24 14:45:50 UTC" [1] -365.5911 -367.2060 -360.4190 -361.1360 -355.4650 -359.0650 [1] 34822 [1] "Average Date / Time for slice RF13 = 2018-05-21 20:13:29.8450362682343" [1] "sum(lsel) = 2065" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -0.271 803.297 [1] -0.271 803.297 [1] 196.703 1000.271 [1] 8.571429e-03 9.999990e+05 [1] "highestmid = 712.74" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM4 RF13 APO_AO2 range = -372.51,-315.47" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1805/AO2_DC8_20180521_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 98484 items [1] 13 2463 24621 [1] "done reading AO2" [1] 2018 2018 2018 2018 2018 2018 [1] 114 114 114 114 114 114 [1] 53100 53110 53120 53130 53140 53150 [1] "2018-04-24 14:45:00 UTC" "2018-04-24 14:45:10 UTC" [3] "2018-04-24 14:45:20 UTC" "2018-04-24 14:45:30 UTC" [5] "2018-04-24 14:45:40 UTC" "2018-04-24 14:45:50 UTC" [1] -713.9589 -708.0490 -698.7280 -696.3380 -691.0040 -693.9890 [1] 34833 [1] "Average Date / Time for slice RF13 = 2018-05-21 20:13:27.6911907196045" [1] "sum(lsel) = 2066" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -0.271 803.297 [1] -0.271 803.297 [1] 196.703 1000.271 [1] 8.571429e-03 9.999990e+05 [1] "highestmid = 712.74" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM4 RF13 O2_AO2 range = -699.76,-628.57" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1805/AO2_DC8_20180521_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 98484 items [1] 13 2463 24621 [1] "done reading AO2" [1] 2018 2018 2018 2018 2018 2018 [1] 114 114 114 114 114 114 [1] 53100 53110 53120 53130 53140 53150 [1] "2018-04-24 14:45:00 UTC" "2018-04-24 14:45:10 UTC" [3] "2018-04-24 14:45:20 UTC" "2018-04-24 14:45:30 UTC" [5] "2018-04-24 14:45:40 UTC" "2018-04-24 14:45:50 UTC" [1] 416.3167 414.8841 414.4018 413.8102 413.8745 413.7575 [1] 34997 [1] "Average Date / Time for slice RF13 = 2018-05-21 20:13:29.8450362682343" [1] "sum(lsel) = 2065" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -0.271 803.297 [1] -0.271 803.297 [1] 196.703 1000.271 [1] 8.571429e-03 9.999990e+05 [1] "highestmid = 712.74" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM4 RF13 CO2_AO2 range = 404.79,415.69" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"