[1] "2025-05-13 17:25:39 MDT" options [1,] "file" "180518a" [2,] "flight" "RF11" [3,] "project" "ATOM4" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "7" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "full" [48,] "o2caltype" "full" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "TRUE" [64,] "icartt" "lookup" [65,] "icarttrev" "1" [66,] "mmsrev" "TRUE" [67,] "usespline" "-6" [68,] "updncorr" "4pt" [69,] "updnave" "180518a" [1] "Reading in flight and plotting intervals" Read 10 records [1] "Reading in /scr/raf/stephens/AO2DAT/180518a.mr" Read 7280 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.33 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.35 seconds" [1] "New JOGEST = 2.35 seconds" [1] "New VALVE SKIP = 25 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/180518a.hr" Read 29122 records [1] "HR FILE MATCHES" [1] "Converting hrdata statout" [1] "Tue May 13 05:25:39 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30762 description: HS CO2 = 400.74 O2 = -585.9" [1] "position 2 cylinder OK30768 description: LS CO2 = 423.76 O2 = -829.1" [1] "position 3 cylinder OK30772 description: LT CO2 = 393.41 O2 = -581.3" [1] "position 4 cylinder OK30764 description: WT CO2 = 405.24 O2 = -767.7" [1] "position 5 cylinder OK30769 description: LP CO2 = 408.97 O2 = -881.7" [1] 400.7440 423.7609 393.4108 405.2393 408.9686 [1] -585.8632 -829.1094 -581.2840 -767.7065 -881.6556 [1] "Nominal linear calibrations:" [1] "co2scl = 0.875 co2off = 58.19 o2scla = -0.055 o2offa = -133.7" [1] "(dV/V)/(dXO2/XO2) = -3.798" [1] "(dV/V)/d(O2/N2) = -3.002" [1] "Reading in very high resolution timeseries" Read 145600 records [1] 145600 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 05:25:40 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 05:25:40 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.002" [1] "o2scaleavenew_drelVdrelP = -3.798" [1] "median(o2scalenew) = -3.008" [1] "Empirical dV/V vs dP/P relationship =-4.051, r^2 =0.314, damping =1.067" [1] "Tue May 13 05:25:41 PM MDT 2025 done redoing corrections" [1] "NON-INTEGER NGAS IN JOGAVES AT:" [1] 5288 5642 6672 $icochar [1] "0" "0" "14:40:30" "14:54:28" "138.523914" [6] "138.616589" "15:35:04" "12:14:26" "138.514516" "138.619326" $ecochar [1] "367" "12:14:26" "14:54:29" "138.622" "138.524509" [6] "138.620991" "367" "15:35:04" "138.619326" "138.647759" $flag [1] "all" "LP" "LP" "screeno2" "screeno2" [6] "screenboth" "LP" "flight" "a" "b" $ico2 [1] 0.0000 0.0000 138.6115 138.6212 138.5239 138.6166 138.6494 138.5100 [9] 138.5145 138.6193 $eco2 [1] 367.0000 138.5100 138.6212 138.6220 138.5245 138.6210 367.0000 138.6494 [9] 138.6193 138.6478 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 5287 5287 138.6114 8.176741 -0.00103745 0.0077153 0.0077153 5287 5288 5288 138.6115 8.180328 -0.00097760 0.0077359 0.0077359 5288 5289 5289 138.6115 8.177114 -0.00096235 0.0077192 0.0077192 5289 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 5287 10.5 1.00 36.00 2690.50 -1 8.180521 8.180079 5288 10.5 2.25 36.25 2031.75 1 8.184110 8.183693 5289 10.5 6.00 37.00 15.50 -1 8.180877 8.180467 vuvsigpdprcorr 5287 8.176791 5288 8.180393 5289 8.177176 [1] 0.6114239 0.6114509 0.6114787 [,1] [,2] [,3] [1,] 0.611435 -1 1 [2,] 0.611445 1 1 [3,] 0.611450 1 1 [4,] 0.611456 1 1 [5,] 0.611462 1 6 [6,] 0.611472 -1 6 [7,] 0.611478 -1 6 [8,] 0.611484 -1 6 [9,] 0.611490 -1 6 [10,] 0.611499 1 6 [11,] 0.611505 1 6 [12,] 0.611511 1 6 [13,] 0.611517 1 6 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 5641 5641 138.6211 8.196492 -0.00100455 0.00698235 0.00698235 5641 5642 5642 138.6212 8.193787 -0.00103725 0.00699400 0.00699400 5642 5643 5643 138.6212 8.196417 -0.00099570 0.00697595 0.00697595 5643 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 5641 10.5 6.00 37.00 7055.5 -1 8.199950 8.199521 5642 10.5 4.75 37.25 5305.5 1 8.197267 8.196825 5643 10.5 1.00 38.00 15.5 -1 8.199873 8.199448 vuvsigpdprcorr 5641 8.196539 5642 8.193839 5643 8.196469 [1] 0.6211317 0.6211594 0.6211864 [,1] [,2] [,3] [1,] 0.621143 -1 6 [2,] 0.621153 1 6 [3,] 0.621159 1 6 [4,] 0.621165 1 6 [5,] 0.621170 1 1 [6,] 0.621180 -1 1 [7,] 0.621186 -1 1 [8,] 0.621192 -1 1 [9,] 0.621197 -1 1 [10,] 0.621207 1 1 [11,] 0.621213 1 1 [12,] 0.621219 1 1 [13,] 0.621224 1 1 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 6671 6671 138.6493 8.119511 -0.00107305 0.01082575 0.01082575 6671 6672 6672 138.6494 8.117491 -0.00107780 0.01082265 0.01082265 6672 6673 6673 138.6494 8.118542 -0.00092035 0.01084205 0.01084205 6673 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 6671 10.5 1.00 40.00 7890.50 -1 8.124648 8.124191 6672 10.5 4.75 40.75 1981.75 1 8.122637 8.122178 6673 10.5 6.00 41.00 25.50 -1 8.123617 8.123225 vuvsigpdprcorr 6671 8.119585 6672 8.117575 6673 8.118613 [1] 0.6493267 0.6493539 0.6493809 [,1] [,2] [,3] [1,] 0.649338 -1 1 [2,] 0.649348 1 1 [3,] 0.649353 1 6 [4,] 0.649359 1 6 [5,] 0.649365 1 6 [6,] 0.649375 -1 6 [7,] 0.649380 -1 6 [8,] 0.649386 -1 6 [9,] 0.649392 -1 6 [10,] 0.649401 1 6 [11,] 0.649407 1 6 [12,] 0.649413 1 6 [13,] 0.649419 1 6 [1] "NON-INTEGER NGASNUM IN JOGAVES AT:" [1] 5288 5642 6672 $icochar [1] "0" "0" "14:40:30" "14:54:28" "138.523914" [6] "138.616589" "15:35:04" "12:14:26" "138.514516" "138.619326" $ecochar [1] "367" "12:14:26" "14:54:29" "138.622" "138.524509" [6] "138.620991" "367" "15:35:04" "138.619326" "138.647759" $flag [1] "all" "LP" "LP" "screeno2" "screeno2" [6] "screenboth" "LP" "flight" "a" "b" $ico2 [1] 0.0000 0.0000 138.6115 138.6212 138.5239 138.6166 138.6494 138.5100 [9] 138.5145 138.6193 $eco2 [1] 367.0000 138.5100 138.6212 138.6220 138.5245 138.6210 367.0000 138.6494 [9] 138.6193 138.6478 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 5287 5287 138.6114 8.176741 -0.00103745 0.0077153 0.0077153 5287 5288 5288 138.6115 8.180328 -0.00097760 0.0077359 0.0077359 5288 5289 5289 138.6115 8.177114 -0.00096235 0.0077192 0.0077192 5289 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 5287 10.5 1.00 36.00 2690.50 -1 8.180521 8.180079 5288 10.5 2.25 36.25 2031.75 1 8.184110 8.183693 5289 10.5 6.00 37.00 15.50 -1 8.180877 8.180467 vuvsigpdprcorr 5287 8.176791 5288 8.180393 5289 8.177176 [1] 0.6114239 0.6114509 0.6114787 [,1] [,2] [,3] [1,] 0.611435 -1 1 [2,] 0.611445 1 1 [3,] 0.611450 1 1 [4,] 0.611456 1 1 [5,] 0.611462 1 6 [6,] 0.611472 -1 6 [7,] 0.611478 -1 6 [8,] 0.611484 -1 6 [9,] 0.611490 -1 6 [10,] 0.611499 1 6 [11,] 0.611505 1 6 [12,] 0.611511 1 6 [13,] 0.611517 1 6 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 5641 5641 138.6211 8.196492 -0.00100455 0.00698235 0.00698235 5641 5642 5642 138.6212 8.193787 -0.00103725 0.00699400 0.00699400 5642 5643 5643 138.6212 8.196417 -0.00099570 0.00697595 0.00697595 5643 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 5641 10.5 6.00 37.00 7055.5 -1 8.199950 8.199521 5642 10.5 4.75 37.25 5305.5 1 8.197267 8.196825 5643 10.5 1.00 38.00 15.5 -1 8.199873 8.199448 vuvsigpdprcorr 5641 8.196539 5642 8.193839 5643 8.196469 [1] 0.6211317 0.6211594 0.6211864 [,1] [,2] [,3] [1,] 0.621143 -1 6 [2,] 0.621153 1 6 [3,] 0.621159 1 6 [4,] 0.621165 1 6 [5,] 0.621170 1 1 [6,] 0.621180 -1 1 [7,] 0.621186 -1 1 [8,] 0.621192 -1 1 [9,] 0.621197 -1 1 [10,] 0.621207 1 1 [11,] 0.621213 1 1 [12,] 0.621219 1 1 [13,] 0.621224 1 1 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 6671 6671 138.6493 8.119511 -0.00107305 0.01082575 0.01082575 6671 6672 6672 138.6494 8.117491 -0.00107780 0.01082265 0.01082265 6672 6673 6673 138.6494 8.118542 -0.00092035 0.01084205 0.01084205 6673 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 6671 10.5 1.00 40.00 7890.50 -1 8.124648 8.124191 6672 10.5 4.75 40.75 1981.75 1 8.122637 8.122178 6673 10.5 6.00 41.00 25.50 -1 8.123617 8.123225 vuvsigpdprcorr 6671 8.119585 6672 8.117575 6673 8.118613 [1] 0.6493267 0.6493539 0.6493809 [,1] [,2] [,3] [1,] 0.649338 -1 1 [2,] 0.649348 1 1 [3,] 0.649353 1 6 [4,] 0.649359 1 6 [5,] 0.649365 1 6 [6,] 0.649375 -1 6 [7,] 0.649380 -1 6 [8,] 0.649386 -1 6 [9,] 0.649392 -1 6 [10,] 0.649401 1 6 [11,] 0.649407 1 6 [12,] 0.649413 1 6 [13,] 0.649419 1 6 [1] "JOGAVES DOES NOT MATCH" [1] "MASKING 20 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 05:25:56 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "RECALC TIME MATCHES" [1] "Tue May 13 05:25:56 PM MDT 2025 done recreating mr o2diffs" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) -97.133 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) -41.631 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) -40.459 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 41.337 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 9 [1] 77 [1] 98 [1] 98 [1] 98 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 71 138.4695 -493.408365 1018462.9 -1 [2,] 131 138.4711 -554.942415 1021285.4 -1 [3,] 132 138.4711 -242.658797 1021895.3 1 [4,] 133 138.4712 118.192309 1022097.4 -1 [5,] 135 138.4712 370.473571 1022418.3 -1 [6,] 195 138.4728 167.826857 1024443.3 -1 [7,] 196 138.4729 -214.848334 1024320.1 1 [8,] 197 138.4729 -520.778749 1023815.3 -1 [9,] 257 138.4745 -587.259158 1025400.6 -1 [10,] 258 138.4745 -386.214346 1026031.4 1 [11,] 259 138.4746 -151.334582 1025928.0 -1 [12,] 261 138.4746 32.309574 1026146.3 -1 [13,] 389 138.4781 227.619807 1028709.2 -1 [14,] 390 138.4781 -33.673606 1028485.5 1 [15,] 391 138.4782 -329.394332 1028129.5 -1 [16,] 453 138.4799 -556.473454 1028575.3 -1 [17,] 454 138.4799 -286.547689 1029152.9 1 [18,] 455 138.4799 9.058720 1029196.2 -1 [19,] 645 138.4851 186.956038 1030424.9 -1 [20,] 646 138.4851 -148.622447 1030242.7 1 [21,] 647 138.4851 -481.041782 1029743.1 -1 [22,] 709 138.4868 -398.067762 1030048.7 -1 [23,] 710 138.4869 -96.697537 1030438.1 1 [24,] 711 138.4869 179.638798 1030629.9 -1 [25,] 965 138.4938 80.802378 1030890.6 -1 [26,] 966 138.4938 -221.696959 1030834.0 1 [27,] 967 138.4939 -493.225357 1030317.9 -1 [28,] 1093 138.4973 -364.456245 1030268.7 -1 [29,] 1094 138.4973 -65.422017 1030616.6 1 [30,] 1095 138.4973 195.424188 1030834.7 -1 [31,] 1157 138.4990 217.142137 1030771.2 -1 [32,] 1158 138.4991 -141.399226 1030555.0 1 [33,] 1159 138.4991 -465.308923 1030061.5 -1 [34,] 1221 138.5008 -376.544191 1030080.5 -1 [35,] 1222 138.5008 -83.145562 1030442.2 1 [36,] 1223 138.5008 180.948909 1030638.4 -1 [37,] 1282 138.5024 128.621335 1030293.0 1 [38,] 1283 138.5025 125.353583 1030307.2 -1 [39,] 1284 138.5025 209.390240 1030062.1 1 [40,] 1304 138.5030 -15.769164 1029953.1 1 [41,] 1305 138.5031 -88.743103 1029948.9 -1 [42,] 1306 138.5031 -72.542295 1030169.0 1 [43,] 1307 138.5031 2.772026 1030174.6 -1 [44,] 1457 138.5072 161.344662 1028194.9 -1 [45,] 1475 138.5077 96.272447 1027453.4 -1 [46,] 1476 138.5077 -214.899315 1027345.0 1 [47,] 1477 138.5078 -500.565022 1026791.6 -1 [48,] 1537 138.5094 -552.369686 1024384.6 -1 [49,] 1538 138.5094 -274.480234 1024912.6 1 [50,] 1539 138.5095 50.658854 1024953.2 -1 [51,] 2403 138.5331 -409.448948 989210.1 -1 [52,] 2469 138.5349 -563.268849 988475.8 -1 [53,] 2470 138.5349 -245.235716 989030.1 1 [54,] 2471 138.5349 120.444301 989165.0 -1 [55,] 2533 138.5366 -51.373187 989021.6 -1 [56,] 2535 138.5367 -538.207663 988585.5 -1 [57,] 2595 138.5383 -585.543420 989286.3 -1 [58,] 2596 138.5383 -327.370101 989886.4 1 [59,] 2597 138.5384 -80.799123 989834.6 -1 [60,] 3683 138.5678 -420.611761 1009238.2 -1 [61,] 3687 138.5679 -411.370079 1009200.0 -1 [62,] 3688 138.5680 -111.183793 1009591.7 1 [63,] 3689 138.5680 183.284041 1009774.0 -1 [64,] 3751 138.5697 -131.690978 1008423.6 -1 [65,] 3753 138.5697 -509.071126 1008044.7 -1 [66,] 4961 138.6025 -416.831868 995551.8 -1 [67,] 5029 138.6044 -544.779261 995989.6 -1 [68,] 5030 138.6044 -178.825385 996544.8 1 [69,] 5031 138.6044 175.032504 996741.5 -1 [70,] 5289 138.6115 -405.233221 998439.8 -1 [71,] 5483 138.6168 572.085103 1000581.2 -1 [72,] 5484 138.6168 882.134478 999999.8 1 [73,] 5485 138.6168 1281.376062 1001309.9 -1 [74,] 5486 138.6169 1751.633438 1000000.6 1 [75,] 5487 138.6169 2101.373701 1002144.8 -1 [76,] 5488 138.6169 2387.760248 1000024.5 1 [77,] 5489 138.6170 2628.403896 1002692.3 -1 [78,] 5491 138.6170 2979.817513 1003052.3 -1 [79,] 5589 138.6197 3645.879897 1004057.4 -1 [80,] 5590 138.6197 3321.858375 1000399.5 1 [81,] 5591 138.6198 2879.191139 1003271.6 -1 [82,] 5592 138.6198 2476.692096 1000395.0 1 [83,] 5593 138.6198 2056.977035 1002437.5 -1 [84,] 5594 138.6198 1681.827224 1000388.4 1 [85,] 5595 138.6199 1408.377430 1001796.7 -1 [86,] 5601 138.6200 766.732333 1001149.0 -1 [87,] 5603 138.6201 528.919344 1000918.1 -1 [88,] 6231 138.6373 -180.442001 997942.0 -1 [89,] 6237 138.6374 219.899612 998311.1 -1 [90,] 6604 138.6475 -68.847110 992180.1 1 [91,] 6605 138.6475 -110.800284 992243.4 -1 [92,] 6606 138.6476 -178.174556 992443.7 1 [93,] 6673 138.6494 147.309789 991285.0 -1 [94,] 7071 138.6603 167.063026 991070.1 -1 [95,] 7072 138.6603 -160.085412 990917.2 1 [96,] 7073 138.6603 -491.178200 990419.9 -1 [97,] 7199 138.6637 -66.179040 990771.0 -1 [98,] 7261 138.6654 -375.163228 990881.4 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 3470 138.5621 300.229 [2,] 4009 138.5767 99859.130 [3,] 4557 138.5915 1991392.000 [4,] 4801 138.5982 10251.720 [5,] 5483 138.6168 538.136 [6,] 5484 138.6168 590.492 [7,] 5485 138.6168 650.587 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) -97.133 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) -32.818 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) -29.269 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 41.337 PER MEG" [1] 138.6212 138.6220 [1] "Screened 31 O2 values from screeno2 period 138.621157407407 to 138.622" [1] 138.5239 138.5245 [1] "Screened 24 O2 values from screeno2 period 138.523914 to 138.524509" [1] 138.6166 138.6210 [1] "Screened 160 O2 values from screenboth period 138.616589 to 138.620991" [1] "Screened 160 CO2 values from screenboth period 138.616589 to 138.620991" [1] 400.7440 423.7609 393.4108 405.2393 408.9686 [1] -585.8632 -829.1094 -581.2840 -767.7065 -881.6556 [1] "Nominal linear calibrations:" [1] "co2scl = 0.875 co2off = 58.19 o2scla = -0.055 o2offa = -133.8" [1] "(dV/V)/(dXO2/XO2) = -3.792" [1] "(dV/V)/d(O2/N2) = -2.998" [1] "Finding cal and sample periods" [1] "Median Cal: 2.45 minutes" [1] "Average Cal: 2.38 minutes" [1] "Shortest Cal: 0.98 minutes" [1] "Longest Cal: 5 minutes" [1] "Removed 2 calibration period(s) with less than 30 seconds of data" [1] "at: 24" [1] "at: 45" [1] "Reading in aircraft data" [1] "Reading /scr/raf/stephens/HUMERGE/ATOM4/MMS/MMS-1HZ_DC8_20180518_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 17 items Read 17 items Read 1 item Read 1 item Read 18 items Read 206640 items [1] "Reading /scr/raf/stephens/HUMERGE/ATOM4/MMS/MMS-20Hz_DC8_20180518_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 25 items Read 25 items Read 1 item Read 1 item Read 26 items Read 5986604 items [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.00278" [1] "HS CO2 vs. PACAB: m = -0.00076, r^2 = 0.02" [1] "LS CO2 vs. PACAB: m = -0.00481, r^2 = 0.52" [1] "HS+LS LIH2O vs. PACAB: m = -3.64e-05" [1] "HS LIH2O vs. PACAB: m = -2.7e-05, r^2 = 0.66" [1] "LS LIH2O vs. PACAB: m = -4.58e-05, r^2 = 0.37" [1] "HS+LS CO2 vs. LIH2O: m = 84.5" [1] "HS CO2 vs. LIH2O: m = 69.2, r^2 = 0.28" [1] "LS CO2 vs. LIH2O: m = 99.8, r^2 = 0.87" [1] "APCO2 vs. PACAB: m = -0.0282, r^2 = 0.39" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = -0.0285" [1] "HS O2 vs. PACAB: m = -0.0176, r^2 = 0.27" [1] "LS O2 vs. PACAB: m = -0.0395, r^2 = 0.09" [1] "HS+LS O2 vs. LIH2O: m = -82.4" [1] "HS O2 vs. LIH2O: m = -598, r^2 = 0.27" [1] "LS O2 vs. LIH2O: m = 433, r^2 = 0.14" [1] "HS+LS O2 vs. PAO2: m = -0.199" [1] "HS O2 vs. PAO2: m = -3.28, r^2 = 0.4" [1] "LS O2 vs. PAO2: m = 2.88, r^2 = 0.32" [1] "HS+LS O2 vs. TPBOX: m = 0.339" [1] "HS O2 vs. TPBOX: m = 1.9, r^2 = 0.66" [1] "LS O2 vs. TPBOX: m = -1.22, r^2 = 0.12" [1] "APO vs. PACAB: m = 0.389, r^2 = 0.39" [1] "APO vs. PAO2: m = -31.1, r^2 = 0.13" [1] "APO vs. TPBOX: m = 2.73, r^2 = 0.01" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 0.423, r^2 = 0.04" [1] "LS CO2 vs. LiCor Cell P: m = -0.834, r^2 = 0.08" [1] "HS CO2 vs. CO2 Vol P: m = 0.867, r^2 = 0.64" [1] "LS CO2 vs. CO2 Vol P: m = 0.931, r^2 = 0.87" [1] "HS CO2 vs. SLOPE: m = 0.0509, r^2 = 0" [1] "LS CO2 vs. SLOPE: m = -0.43, r^2 = 0.08" [1] "HS O2 vs. O2 Vol P: m = -2.41, r^2 = 0.15" [1] "LS O2 vs. O2 Vol P: m = 5.36, r^2 = 0.02" [1] "HS O2 vs. O2 Cell T: m = 0.971, r^2 = 0.08" [1] "LS O2 vs. O2 Cell T: m = -5.46, r^2 = 0.05" [1] "HS O2 vs. CO2 Vol P: m = -4.94, r^2 = 0.32" [1] "LS O2 vs. CO2 Vol P: m = -2.98, r^2 = 0" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = -0.0185, r^2 = 0" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = 6.43, r^2 = 0.01" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -4.94, r^2 = 0.32" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -2.98, r^2 = 0" [1] "HS O2 vs. LIH2O: m = -533, r^2 = 0.17" [1] "LS O2 vs. LIH2O: m = 773, r^2 = 0.01" [1] "HS O2 vs. SLOPE: m = -0.485, r^2 = 0.57" [1] "LS O2 vs. SLOPE: m = -1.15, r^2 = 0.95" [1] "HS CO2 vs. Time: m = 38.986, r^2 = 0.89" [1] "LS CO2 vs. Time: m = 37.071, r^2 = 0.89" [1] "HS CO2 vs. Cylinder T: m = 0.476, r^2 = 0.02" [1] "LS CO2 vs. Cylinder T: m = -2.558, r^2 = 0.078" [1] "HS CO2 vs. Regulator T: m = -0.535, r^2 = 0.19" [1] "LS CO2 vs. Regulator T: m = -0.869, r^2 = 0.539" [1] "HS CO2 vs. Ref. Volumes T: m = -0.309, r^2 = 0.07" [1] "LS CO2 vs. Ref. Volumes T: m = -0.763, r^2 = 0.482" [1] "HS CO2 vs. Manifold T: m = -0.214, r^2 = 0.3" [1] "LS CO2 vs. Manifold T: m = -0.316, r^2 = 0.724" [1] "HS CO2 vs. Pump Box T: m = -0.24, r^2 = 0.41" [1] "LS CO2 vs. Pump Box T: m = -0.288, r^2 = 0.693" [1] "HS O2 vs. Cylinder T: m = -5.278, r^2 = 0.04" [1] "LS O2 vs. Cylinder T: m = -125.457, r^2 = 0.048" [1] "HS O2 vs. Regulator T: m = 2.45, r^2 = 0.06" [1] "LS O2 vs. Regulator T: m = -14.582, r^2 = 0.039" [1] "HS O2 vs. Ref. Volumes T: m = 0.988, r^2 = 0.01" [1] "LS O2 vs. Ref. Volumes T: m = -20.131, r^2 = 0.086" [1] "HS O2 vs. Manifold T: m = 1.344, r^2 = 0.18" [1] "LS O2 vs. Manifold T: m = -2.621, r^2 = 0.013" [1] "HS O2 vs. Pump Box T: m = 1.683, r^2 = 0.31" [1] "LS O2 vs. Pump Box T: m = -0.825, r^2 = 0.001" [1] "HS CO2 vs. WT P: m = -0.001, r^2 = 0.03" [1] "LS CO2 vs. WT P: m = -0.007, r^2 = 0.393" [1] "HS CO2 vs. SP P: m = -0.000779, r^2 = 0.03" [1] "HS CO2 vs. PACAB comb with SP P: m = -0.104, r^2 = 0.27" [1] "HS CO2 vs. SP P comb with PACAB: m = 0.104, r^2 = 0.27" [1] "LS CO2 vs. SP P: m = -0.00325, r^2 = 0.38" [1] "LS CO2 vs. PACAB comb with SP P: m = -0.011, r^2 = 0.46" [1] "LS CO2 vs. SP P comb with PACAB: m = 0.003, r^2 = 0.46" [1] "HS CO2 vs. WT FL: m = -0.146, r^2 = 0.33" [1] "LS CO2 vs. WT FL: m = -0.211, r^2 = 0.701" [1] "HS CO2 vs. SP FL: m = -0.032, r^2 = 0.02" [1] "LS CO2 vs. SP FL: m = -0.108, r^2 = 0.085" [1] "HS O2 vs. SLPDIFF: m = 0.598, r^2 = 0.21" [1] "LS O2 vs. SLPDIFF: m = 3.575, r^2 = 0.325" [1] "HS O2 vs. WT P: m = -0.007, r^2 = 0.02" [1] "LS O2 vs. WT P: m = -0.017, r^2 = 0.001" [1] "HS O2 vs. SP P: m = -0.007, r^2 = 0.02" [1] "LS O2 vs. SP P: m = -0.054, r^2 = 0.008" [1] "HS O2 vs. WT FL: m = 0.531, r^2 = 0.07" [1] "LS O2 vs. WT FL: m = -2.257, r^2 = 0.021" [1] "HS O2 vs. SP FL: m = 0.464, r^2 = 0.08" [1] "LS O2 vs. SP FL: m = -3.888, r^2 = 0.028" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): 77.23, 68.4, 53.74, 52.54" [1] "Empirical LP O2 lag flow(s): 104.9, 108.3, 108.5, 102.1" [1] "Empirical LP CO2 lag time(s): 53.64, 44.38, 46.23, 2.69" [1] "Empirical LP CO2 lag flow(s): 104.9, 108.3, 108.5, 102.1" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.43" [1] "Median all HS CO2 SD = 0.43" [1] "Median all LS CO2 SD = 0.43" [1] "Median all LT CO2 SD = 0.45" [1] "Median all WT CO2 SD = 0.42" [1] "Median all HS or LS CO2 SD = 0.43" [1] "Median all cal O2 SD = 2.05" [1] "Median all HS O2 SD = 1.81" [1] "Median all LS O2 SD = 1.78" [1] "Median all LT O2 SD = 1.59" [1] "Median all WT O2 SD = 1.73" [1] "Median all HS or LS O2 SD = 1.78" [1] "Median all cal CO2 Slope = 0.01" [1] "Median all HS CO2 Slope = -0.04" [1] "Median all LS CO2 Slope = -0.03" [1] "Median all LT CO2 Slope = 0.09" [1] "Median all WT CO2 Slope = 0.09" [1] "Median all HS or LS CO2 Slope = -0.03" [1] "Median all cal O2 Slope = 0.55" [1] "Median all HS O2 Slope = 0.62" [1] "Median all LS O2 Slope = 1.33" [1] "Median all LT O2 Slope = 0.66" [1] "Median all WT O2 Slope = -0.65" [1] "Median all HS or LS O2 Slope = 0.99" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 4.74 per meg" [1] "Initial O2 Calibration Offset = 12.84 per meg" [1] "SD of O2 Calibration (post-takeoff) = 1.12 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = 11.61 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = -3.8 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using ATom2 inlet volumes" [1] "before any lag: 40398.39 57538.77" [1] "Time lag adjustments = 7 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 48.9 at 106.1 sccm" [1] "Median O2 delay + tlagff = 49.7 at 106.1 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 48.4 at 106.1 sccm" [1] "Median O2 delay from 3-way + tlagff = 49.1 at 106.1 sccm" [1] "after calc and ff lag: 40344.28 57483.76" [1] "2025-05-13 17:26:17 MDT" [1] "Calculating 1-sec interpolated values" [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1805/AO2_DC8_20180518_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 45920 items [1] 11 1149 11480 [1] "done reading AO2" [1] 2018 2018 2018 2018 2018 2018 [1] 114 114 114 114 114 114 [1] 53100 53110 53120 53130 53140 53150 [1] "2018-04-24 14:45:00 UTC" "2018-04-24 14:45:10 UTC" [3] "2018-04-24 14:45:20 UTC" "2018-04-24 14:45:30 UTC" [5] "2018-04-24 14:45:40 UTC" "2018-04-24 14:45:50 UTC" [1] -365.5911 -367.2060 -360.4190 -361.1360 -355.4650 -359.0650 [1] 34821 [1] "Average Date / Time for slice RF11 = 2018-05-18 13:53:52.6036865711212" [1] "sum(lsel) = 868" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -25.93667 793.20600 [1] -25.93667 793.20600 [1] 206.794 1025.937 [1] 8.881784e-16 9.999990e+05 [1] "highestmid = 711.727" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM4 RF11 APO_AO2 range = -372.6,-340.33" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1805/AO2_DC8_20180518_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 45920 items [1] 11 1149 11480 [1] "done reading AO2" [1] 2018 2018 2018 2018 2018 2018 [1] 114 114 114 114 114 114 [1] 53100 53110 53120 53130 53140 53150 [1] "2018-04-24 14:45:00 UTC" "2018-04-24 14:45:10 UTC" [3] "2018-04-24 14:45:20 UTC" "2018-04-24 14:45:30 UTC" [5] "2018-04-24 14:45:40 UTC" "2018-04-24 14:45:50 UTC" [1] -713.9589 -708.0490 -698.7280 -696.3380 -691.0040 -693.9890 [1] 34834 [1] "Average Date / Time for slice RF11 = 2018-05-18 13:53:48.8404133319855" [1] "sum(lsel) = 871" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -25.93667 793.20600 [1] -25.93667 793.20600 [1] 206.794 1025.937 [1] 8.881784e-16 9.999990e+05 [1] "highestmid = 711.727" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM4 RF11 O2_AO2 range = -706.84,-625.27" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1805/AO2_DC8_20180518_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 45920 items [1] 11 1149 11480 [1] "done reading AO2" [1] 2018 2018 2018 2018 2018 2018 [1] 114 114 114 114 114 114 [1] 53100 53110 53120 53130 53140 53150 [1] "2018-04-24 14:45:00 UTC" "2018-04-24 14:45:10 UTC" [3] "2018-04-24 14:45:20 UTC" "2018-04-24 14:45:30 UTC" [5] "2018-04-24 14:45:40 UTC" "2018-04-24 14:45:50 UTC" [1] 416.3167 414.8841 414.4018 413.8102 413.8745 413.7575 [1] 35001 [1] "Average Date / Time for slice RF11 = 2018-05-18 13:53:36.3625998497009" [1] "sum(lsel) = 877" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -25.93667 793.20600 [1] -25.93667 793.20600 [1] 206.794 1025.937 [1] 8.881784e-16 9.999990e+05 [1] "highestmid = 711.727" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM4 RF11 CO2_AO2 range = 402.19,414.77" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 207 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 207 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 207 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"