[1] "2025-05-13 17:15:27 MDT" options [1,] "file" "180512a" [2,] "flight" "RF08" [3,] "project" "ATOM4" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "7" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "full" [48,] "o2caltype" "full" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "TRUE" [64,] "icartt" "lookup" [65,] "icarttrev" "1" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "180512a" [1] "Reading in flight and plotting intervals" Read 21 records [1] "Reading in /scr/raf/stephens/AO2DAT/180512a.mr" Read 17933 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.33 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.36 seconds" [1] "New JOGEST = 2.36 seconds" [1] "New VALVE SKIP = 25 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/180512a.hr" Read 71732 records [1] "HR FILE MATCHES" [1] "Converting hrdata statout" [1] "Tue May 13 05:15:28 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30762 description: HS CO2 = 400.74 O2 = -586" [1] "position 2 cylinder OK30768 description: LS CO2 = 423.76 O2 = -829" [1] "position 3 cylinder OK30772 description: LT CO2 = 393.41 O2 = -581.4" [1] "position 4 cylinder OK30770 description: WT CO2 = 409.57 O2 = -861" [1] "position 5 cylinder OK30769 description: LP CO2 = 408.97 O2 = -882.3" [1] 400.7440 423.7601 393.4101 409.5652 408.9688 [1] -586.0352 -829.0411 -581.3962 -860.9958 -882.3089 [1] "Nominal linear calibrations:" [1] "co2scl = 0.902 co2off = 35.63 o2scla = -0.055 o2offa = -149.7" [1] "(dV/V)/(dXO2/XO2) = -3.831" [1] "(dV/V)/d(O2/N2) = -3.028" [1] "Reading in very high resolution timeseries" Read 358660 records [1] 358660 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 05:15:29 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 05:15:31 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.028" [1] "o2scaleavenew_drelVdrelP = -3.831" [1] "median(o2scalenew) = -3.029" [1] "Empirical dV/V vs dP/P relationship =-4.22, r^2 =0.251, damping =1.102" [1] "Tue May 13 05:15:31 PM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "Plotting Jog Shapes" [1] "Tue May 13 05:16:29 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "RECALC TIME MATCHES" [1] "Tue May 13 05:16:29 PM MDT 2025 done recreating mr o2diffs" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 128.093 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 65.677 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 48.64 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -17.037 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 3 [1] 120 [1] 147 [1] 147 [1] 147 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 71 132.4270 -30.508832 1091507.8 -1 [2,] 72 132.4270 -390.940645 1091557.7 1 [3,] 73 132.4270 -749.565327 1090735.2 -1 [4,] 135 132.4288 -830.285094 1091017.6 -1 [5,] 136 132.4288 -567.301433 1091934.2 1 [6,] 137 132.4288 -256.465115 1091693.6 -1 [7,] 139 132.4289 -26.801949 1091933.8 -1 [8,] 201 132.4306 -100.791367 1092316.1 -1 [9,] 202 132.4306 -446.618852 1092455.1 1 [10,] 203 132.4306 -781.390246 1091593.8 -1 [11,] 265 132.4323 -868.751886 1092011.2 -1 [12,] 266 132.4323 -626.971907 1092977.7 1 [13,] 267 132.4324 -324.367093 1092662.0 -1 [14,] 269 132.4324 -47.785913 1092960.2 -1 [15,] 391 132.4357 -51.463190 1093456.2 -1 [16,] 392 132.4358 -282.097513 1093506.7 1 [17,] 393 132.4358 -547.238189 1092880.0 -1 [18,] 395 132.4358 -794.130860 1092628.5 -1 [19,] 455 132.4375 -727.019780 1092653.2 -1 [20,] 456 132.4375 -340.301810 1093439.7 1 [21,] 457 132.4375 31.179518 1093477.7 -1 [22,] 633 132.4427 -45.627302 1093116.0 -1 [23,] 634 132.4427 -446.798936 1093166.6 1 [24,] 635 132.4427 -773.564872 1092305.6 -1 [25,] 693 132.4443 -836.873856 1091997.7 -1 [26,] 694 132.4443 -590.230389 1092909.5 1 [27,] 695 132.4444 -322.174675 1092585.1 -1 [28,] 697 132.4444 -88.028350 1092808.4 -1 [29,] 1017 132.4531 -174.836094 1090184.9 -1 [30,] 1018 132.4532 -495.009205 1090386.5 1 [31,] 1019 132.4532 -778.158089 1089513.3 -1 [32,] 1145 132.4567 -513.435826 1088016.9 -1 [33,] 1147 132.4567 -34.084062 1088494.4 -1 [34,] 1275 132.4601 32.999277 1086837.6 -1 [35,] 1276 132.4601 -275.601265 1086786.0 1 [36,] 1277 132.4602 -631.227798 1086054.8 -1 [37,] 1279 132.4602 -809.258362 1085842.2 -1 [38,] 1343 132.4620 -794.901578 1084797.7 -1 [39,] 1344 132.4620 -467.108354 1085636.4 1 [40,] 1345 132.4620 -138.385287 1085478.9 -1 [41,] 1655 132.4705 -51.378395 1080069.3 -1 [42,] 1656 132.4705 -285.475765 1080137.1 1 [43,] 1657 132.4705 -628.271070 1079451.1 -1 [44,] 1809 132.4747 -145.290825 1083925.6 -1 [45,] 1810 132.4747 89.737141 1084082.2 1 [46,] 1811 132.4747 328.484308 1084457.5 -1 [47,] 1932 132.4780 -545.836922 1087404.7 1 [48,] 1933 132.4781 -520.187744 1086677.3 -1 [49,] 1934 132.4781 -433.542980 1087173.8 1 [50,] 2705 132.4993 -731.712737 1060129.5 -1 [51,] 2711 132.4994 -834.525678 1059584.4 -1 [52,] 2773 132.5011 -852.413885 1055250.3 -1 [53,] 2774 132.5011 -520.701212 1056094.2 1 [54,] 2775 132.5012 -165.810870 1055869.2 -1 [55,] 2837 132.5029 -56.008658 1052132.3 -1 [56,] 2838 132.5029 -368.265436 1052124.8 1 [57,] 2839 132.5029 -697.488594 1051309.8 -1 [58,] 2841 132.5030 -847.786838 1051051.9 -1 [59,] 2901 132.5046 -873.202183 1047823.8 -1 [60,] 2902 132.5046 -503.481357 1048694.6 1 [61,] 2903 132.5047 -137.343419 1048517.3 -1 [62,] 2965 132.5063 2.160934 1046088.1 -1 [63,] 2966 132.5064 -288.623707 1046041.3 1 [64,] 2967 132.5064 -588.023200 1045363.9 -1 [65,] 4179 132.5396 -708.034436 1036260.3 -1 [66,] 4183 132.5397 -688.362805 1036195.6 -1 [67,] 4184 132.5397 -390.377861 1036868.5 1 [68,] 4185 132.5397 -100.190415 1036749.0 -1 [69,] 4247 132.5414 -208.728493 1034965.1 -1 [70,] 4248 132.5415 -549.362320 1035166.2 1 [71,] 4249 132.5415 -799.128226 1034301.9 -1 [72,] 5287 132.5699 -739.167279 1012191.4 -1 [73,] 5353 132.5717 -847.244448 1013241.0 -1 [74,] 5354 132.5717 -526.027771 1014125.9 1 [75,] 5355 132.5718 -181.335401 1013977.4 -1 [76,] 5479 132.5751 21.378306 1016584.5 -1 [77,] 5480 132.5752 -296.982929 1016578.8 1 [78,] 5481 132.5752 -625.589891 1015943.8 -1 [79,] 6553 132.6046 -752.812825 1009421.5 -1 [80,] 6557 132.6047 -743.674548 1009337.1 -1 [81,] 6558 132.6047 -444.686746 1010056.5 1 [82,] 6559 132.6048 -193.836827 1009854.8 -1 [83,] 6621 132.6065 -124.199654 1008280.9 -1 [84,] 6622 132.6065 -451.204085 1008387.9 1 [85,] 6623 132.6065 -776.394824 1007567.1 -1 [86,] 7821 132.6393 -692.346389 1001949.1 -1 [87,] 7887 132.6411 -845.355868 1002874.3 -1 [88,] 7888 132.6412 -503.417537 1003742.7 1 [89,] 7889 132.6412 -154.225889 1003619.2 -1 [90,] 8013 132.6446 13.164395 1005579.7 -1 [91,] 8014 132.6446 -295.988956 1005587.0 1 [92,] 8015 132.6446 -595.884043 1004981.5 -1 [93,] 9165 132.6740 -735.712089 995048.3 -1 [94,] 9171 132.6742 -435.770742 995432.4 -1 [95,] 9173 132.6742 -89.220535 995759.5 -1 [96,] 9237 132.6759 -44.820949 996291.2 -1 [97,] 9238 132.6759 -331.166326 996349.9 1 [98,] 9239 132.6759 -642.309003 995683.9 -1 [99,] 10481 132.7088 -670.496790 1005661.9 -1 [100,] 10547 132.7106 -849.976852 1005131.0 -1 [101,] 10548 132.7106 -510.787357 1005979.2 1 [102,] 10549 132.7106 -157.702819 1005830.2 -1 [103,] 10611 132.7123 -242.533240 1004886.0 -1 [104,] 10612 132.7123 -543.490848 1005130.6 1 [105,] 10613 132.7124 -820.972972 1004280.1 -1 [106,] 10673 132.7140 -885.935480 1002849.8 -1 [107,] 10674 132.7140 -541.328433 1003722.6 1 [108,] 10675 132.7140 -164.624876 1003549.1 -1 [109,] 10737 132.7157 -161.323201 1001725.9 -1 [110,] 10738 132.7157 -436.708018 1001882.4 1 [111,] 10739 132.7158 -667.990647 1001168.1 -1 [112,] 11879 132.7470 -703.099298 986500.5 -1 [113,] 11883 132.7471 -647.967925 986570.2 -1 [114,] 11884 132.7471 -378.549507 987206.2 1 [115,] 11885 132.7472 -103.337230 987107.1 -1 [116,] 11945 132.7488 -38.353075 987078.4 -1 [117,] 11946 132.7488 -381.945985 987115.0 1 [118,] 11947 132.7489 -755.534253 986355.3 -1 [119,] 13147 132.7817 -715.726241 983360.1 -1 [120,] 13215 132.7835 -839.546091 984442.0 -1 [121,] 13216 132.7836 -482.717381 985289.3 1 [122,] 13217 132.7836 -125.472358 985199.9 -1 [123,] 13343 132.7870 -11.452938 987569.5 -1 [124,] 13344 132.7870 -349.865637 987603.7 1 [125,] 13345 132.7871 -690.296126 986928.1 -1 [126,] 14425 132.8164 -721.908175 985224.0 -1 [127,] 14431 132.8166 -238.044176 985654.4 -1 [128,] 14493 132.8183 -60.033559 984812.5 -1 [129,] 14494 132.8183 -354.686447 984852.8 1 [130,] 14495 132.8183 -665.946329 984153.4 -1 [131,] 15707 132.8512 -631.658678 985906.7 -1 [132,] 15775 132.8530 -485.256967 986328.2 -1 [133,] 15777 132.8531 -90.800774 986706.4 -1 [134,] 17355 132.8963 -196.050113 990867.9 -1 [135,] 17375 132.8968 -144.871752 990607.5 -1 [136,] 17376 132.8969 224.698677 990713.4 1 [137,] 17377 132.8969 530.006533 991247.2 -1 [138,] 17379 132.8969 847.478803 991539.7 -1 [139,] 17737 132.9067 -138.384698 992914.2 -1 [140,] 17738 132.9068 -475.299881 993100.2 1 [141,] 17739 132.9068 -806.186152 992329.7 -1 [142,] 17863 132.9102 -663.012386 996596.3 -1 [143,] 17864 132.9102 -337.517596 997261.5 1 [144,] 17865 132.9102 -49.554410 997244.3 -1 [145,] 17927 132.9119 -84.749612 999033.1 -1 [146,] 17928 132.9119 -430.415347 999158.0 1 [147,] 17929 132.9119 -771.264416 998400.4 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 624 132.4424 4.060900e+02 [2,] 10905 132.7203 3.096930e+02 [3,] 11295 132.7310 1.033094e+09 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 128.093 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 65.677 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 48.64 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -17.037 PER MEG" [1] 400.7440 423.7601 393.4101 409.5652 408.9688 [1] -586.0352 -829.0411 -581.3962 -860.9958 -882.3089 [1] "Nominal linear calibrations:" [1] "co2scl = 0.902 co2off = 35.63 o2scla = -0.055 o2offa = -149.7" [1] "(dV/V)/(dXO2/XO2) = -3.824" [1] "(dV/V)/d(O2/N2) = -3.023" [1] "Finding cal and sample periods" [1] "Median Cal: 2.44 minutes" [1] "Average Cal: 2.42 minutes" [1] "Shortest Cal: 0.43 minutes" [1] "Longest Cal: 5 minutes" [1] "Removed 2 calibration period(s) with less than 30 seconds of data" [1] "at: 14" [1] "at: 64" [1] "Reading in aircraft data" [1] "Reading /scr/raf/stephens/HUMERGE/ATOM4/MMS/MMS-1HZ_DC8_20180512_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 17 items Read 17 items Read 1 item Read 1 item Read 18 items Read 646128 items [1] "Reading /scr/raf/stephens/HUMERGE/ATOM4/MMS/MMS-20Hz_DC8_20180512_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 25 items Read 25 items Read 1 item Read 1 item Read 26 items Read 18682690 items [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.000739" [1] "HS CO2 vs. PACAB: m = -0.00112, r^2 = 0.08" [1] "LS CO2 vs. PACAB: m = -0.000361, r^2 = 0.02" [1] "HS+LS LIH2O vs. PACAB: m = -9.95e-06" [1] "HS LIH2O vs. PACAB: m = 6.94e-06, r^2 = 0.07" [1] "LS LIH2O vs. PACAB: m = -2.68e-05, r^2 = 0.57" [1] "HS+LS CO2 vs. LIH2O: m = 5.93" [1] "HS CO2 vs. LIH2O: m = -5.47, r^2 = 0" [1] "LS CO2 vs. LIH2O: m = 17.3, r^2 = 0.07" [1] "APCO2 vs. PACAB: m = 0.00134, r^2 = 0" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = -0.0114" [1] "HS O2 vs. PACAB: m = -0.00233, r^2 = 0" [1] "LS O2 vs. PACAB: m = -0.0205, r^2 = 0.26" [1] "HS+LS O2 vs. LIH2O: m = 154" [1] "HS O2 vs. LIH2O: m = -159, r^2 = 0.02" [1] "LS O2 vs. LIH2O: m = 467, r^2 = 0.17" [1] "HS+LS O2 vs. PAO2: m = 3.45" [1] "HS O2 vs. PAO2: m = 1.86, r^2 = 0.06" [1] "LS O2 vs. PAO2: m = 5.04, r^2 = 0.22" [1] "HS+LS O2 vs. TPBOX: m = 0.267" [1] "HS O2 vs. TPBOX: m = 0.323, r^2 = 0.05" [1] "LS O2 vs. TPBOX: m = 0.212, r^2 = 0.01" [1] "APO vs. PACAB: m = -0.0192, r^2 = 0" [1] "APO vs. PAO2: m = -60.1, r^2 = 0.31" [1] "APO vs. TPBOX: m = -12.9, r^2 = 0.14" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 0.172, r^2 = 0.08" [1] "LS CO2 vs. LiCor Cell P: m = 0.0807, r^2 = 0.03" [1] "HS CO2 vs. CO2 Vol P: m = 0.424, r^2 = 0.24" [1] "LS CO2 vs. CO2 Vol P: m = 0.394, r^2 = 0.36" [1] "HS CO2 vs. SLOPE: m = -0.439, r^2 = 0.21" [1] "LS CO2 vs. SLOPE: m = -0.245, r^2 = 0.17" [1] "HS O2 vs. O2 Vol P: m = 0.19, r^2 = 0" [1] "LS O2 vs. O2 Vol P: m = 6.28, r^2 = 0.07" [1] "HS O2 vs. O2 Cell T: m = -0.851, r^2 = 0.07" [1] "LS O2 vs. O2 Cell T: m = -3.75, r^2 = 0.13" [1] "HS O2 vs. CO2 Vol P: m = -2.35, r^2 = 0.06" [1] "LS O2 vs. CO2 Vol P: m = -7.03, r^2 = 0.06" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = 0.612, r^2 = 0.02" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = -0.117, r^2 = 0" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -2.35, r^2 = 0.06" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -7.03, r^2 = 0.06" [1] "HS O2 vs. LIH2O: m = -200, r^2 = 0.03" [1] "LS O2 vs. LIH2O: m = 1270, r^2 = 0.22" [1] "HS O2 vs. SLOPE: m = -0.101, r^2 = 0.04" [1] "LS O2 vs. SLOPE: m = -0.781, r^2 = 0.55" [1] "HS CO2 vs. Time: m = 28.236, r^2 = 0.87" [1] "LS CO2 vs. Time: m = 28.638, r^2 = 0.88" [1] "HS CO2 vs. Cylinder T: m = 0.193, r^2 = 0.03" [1] "LS CO2 vs. Cylinder T: m = -0.062, r^2 = 0.005" [1] "HS CO2 vs. Regulator T: m = 0.159, r^2 = 0.12" [1] "LS CO2 vs. Regulator T: m = 0.064, r^2 = 0.042" [1] "HS CO2 vs. Ref. Volumes T: m = 0.223, r^2 = 0.13" [1] "LS CO2 vs. Ref. Volumes T: m = 0.065, r^2 = 0.018" [1] "HS CO2 vs. Manifold T: m = -0.028, r^2 = 0.01" [1] "LS CO2 vs. Manifold T: m = -0.083, r^2 = 0.186" [1] "HS CO2 vs. Pump Box T: m = -0.02, r^2 = 0.02" [1] "LS CO2 vs. Pump Box T: m = -0.028, r^2 = 0.064" [1] "HS O2 vs. Cylinder T: m = 2.519, r^2 = 0.04" [1] "LS O2 vs. Cylinder T: m = -5.453, r^2 = 0.021" [1] "HS O2 vs. Regulator T: m = 0.976, r^2 = 0.04" [1] "LS O2 vs. Regulator T: m = 0.002, r^2 = 0" [1] "HS O2 vs. Ref. Volumes T: m = -1.018, r^2 = 0.02" [1] "LS O2 vs. Ref. Volumes T: m = -8.538, r^2 = 0.164" [1] "HS O2 vs. Manifold T: m = -0.147, r^2 = 0" [1] "LS O2 vs. Manifold T: m = -1.758, r^2 = 0.043" [1] "HS O2 vs. Pump Box T: m = 0.517, r^2 = 0.1" [1] "LS O2 vs. Pump Box T: m = -0.112, r^2 = 0.001" [1] "HS CO2 vs. WT P: m = -0.001, r^2 = 0.1" [1] "LS CO2 vs. WT P: m = -0.001, r^2 = 0.06" [1] "HS CO2 vs. SP P: m = -0.00079, r^2 = 0.12" [1] "HS CO2 vs. PACAB comb with SP P: m = -0.027, r^2 = 0.13" [1] "HS CO2 vs. SP P comb with PACAB: m = 0.027, r^2 = 0.13" [1] "LS CO2 vs. SP P: m = -0.000508, r^2 = 0.07" [1] "LS CO2 vs. PACAB comb with SP P: m = 0.014, r^2 = 0.17" [1] "LS CO2 vs. SP P comb with PACAB: m = -0.014, r^2 = 0.17" [1] "HS CO2 vs. WT FL: m = 0.063, r^2 = 0.05" [1] "LS CO2 vs. WT FL: m = -0.018, r^2 = 0.007" [1] "HS CO2 vs. SP FL: m = 0.051, r^2 = 0.19" [1] "LS CO2 vs. SP FL: m = 0.022, r^2 = 0.072" [1] "HS O2 vs. SLPDIFF: m = -0.044, r^2 = 0" [1] "LS O2 vs. SLPDIFF: m = -0.691, r^2 = 0.076" [1] "HS O2 vs. WT P: m = 0.007, r^2 = 0.03" [1] "LS O2 vs. WT P: m = -0.015, r^2 = 0.02" [1] "HS O2 vs. SP P: m = 0.007, r^2 = 0.03" [1] "LS O2 vs. SP P: m = -0.011, r^2 = 0.013" [1] "HS O2 vs. WT FL: m = 0.578, r^2 = 0.03" [1] "LS O2 vs. WT FL: m = -2.484, r^2 = 0.066" [1] "HS O2 vs. SP FL: m = -0.195, r^2 = 0.02" [1] "LS O2 vs. SP FL: m = 0.241, r^2 = 0.005" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): 30.46, 52.86" [1] "Empirical LP O2 lag flow(s): 97.3, 107.2" [1] "Empirical LP CO2 lag time(s): 23.03, -10.81" [1] "Empirical LP CO2 lag flow(s): 97.3, 107.2" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.47" [1] "Median all HS CO2 SD = 0.46" [1] "Median all LS CO2 SD = 0.46" [1] "Median all LT CO2 SD = 0.5" [1] "Median all WT CO2 SD = 0.49" [1] "Median all HS or LS CO2 SD = 0.46" [1] "Median all cal O2 SD = 2.48" [1] "Median all HS O2 SD = 1.78" [1] "Median all LS O2 SD = 2.33" [1] "Median all LT O2 SD = 2.53" [1] "Median all WT O2 SD = 1.94" [1] "Median all HS or LS O2 SD = 2.04" [1] "Median all cal CO2 Slope = 0" [1] "Median all HS CO2 Slope = -0.1" [1] "Median all LS CO2 Slope = -0.01" [1] "Median all LT CO2 Slope = 0.05" [1] "Median all WT CO2 Slope = 0.08" [1] "Median all HS or LS CO2 Slope = -0.04" [1] "Median all cal O2 Slope = 0.34" [1] "Median all HS O2 Slope = -0.18" [1] "Median all LS O2 Slope = 1.33" [1] "Median all LT O2 Slope = 0.05" [1] "Median all WT O2 Slope = -0.6" [1] "Median all HS or LS O2 Slope = 0.53" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 3.65 per meg" [1] "Initial O2 Calibration Offset = -2.88 per meg" [1] "SD of O2 Calibration (post-takeoff) = 1.71 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = -3.74 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = -5.19 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using ATom2 inlet volumes" [1] "before any lag: 36726.83 78800.95" [1] "Time lag adjustments = 7 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 50 at 107.1 sccm" [1] "Median O2 delay + tlagff = 50.8 at 107.1 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 48.2 at 107.1 sccm" [1] "Median O2 delay from 3-way + tlagff = 48.9 at 107.1 sccm" [1] "after calc and ff lag: 36667.39 78748.93" [1] "2025-05-13 17:17:31 MDT" [1] "Calculating 1-sec interpolated values" [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] -13.426378688 -13.426378688 -3.556663956 -3.508562887 -3.393081499 [6] -3.146696023 -4.277415143 -4.481294650 -4.481294650 -4.481294650 [11] -4.602167523 -5.111715986 -6.049935498 -6.666368404 -6.666368404 [16] -15.538725341 -15.538725341 -13.895676638 -12.740977664 -4.823516721 [21] -4.823516721 -4.823516721 -8.811231570 -0.949737660 -0.949737660 [26] 4.092578858 5.541477431 -4.357730817 -4.970414933 -4.970414933 [31] -7.628591853 -8.548610393 -8.402029196 -8.402029196 -8.402029196 [36] -9.393663789 -9.524171075 -9.627119736 -9.627119736 -2.865091429 [41] 3.438392573 3.941342240 8.913457235 9.602480727 5.519291491 [46] -5.318370553 -6.017730115 -6.017730115 0.104838029 1.998887203 [51] 1.998887203 -1.871913983 -6.029666341 -6.076896539 -4.038111169 [56] -0.957479162 -0.957479162 -10.658870586 -10.658870586 -14.578342128 [61] -16.460715358 -4.950537052 -5.726778283 -5.788671340 -5.788671340 [66] -9.293625916 -9.554610379 -9.554610379 -12.200297421 -15.014778298 [71] -19.283778431 -19.283778431 -20.124634846 -20.730900368 -15.360520493 [76] -15.360520493 -9.483163235 -7.646594022 -12.002767857 -12.719978753 [81] -13.837290063 -13.837290063 -16.679451926 -19.601644089 -19.601644089 [86] -18.248532126 -9.322886103 -9.322886103 -10.775088719 -11.298991116 [91] -8.873723595 -4.885602088 -4.885602088 -4.817534014 -2.087719946 [96] -14.995318598 -14.946012969 -14.207919413 -14.207919413 -3.833777431 [101] -4.629802949 -6.806862900 -6.995187568 -7.962182456 -9.470079615 [106] -13.063259250 -13.063259250 -14.283594615 -14.120497188 -14.012299446 [111] -14.012299446 -9.936871836 -3.844460137 -3.844460137 -3.844460137 [116] -7.933942216 -12.643395167 -12.643395167 -10.695745430 -7.096974784 [121] -0.972409207 -1.330421800 -5.722910031 -7.658084663 -11.618000409 [126] -9.608885310 -6.367265613 -6.367265613 -1.730442937 -1.938139075 [131] -2.792090426 -3.342160018 -3.431758984 -3.493243016 -3.515472142 [136] -3.566549611 -3.822615197 -10.214382527 -10.214382527 -10.214382527 [141] -10.214382527 -3.126921274 -3.085501753 -3.031958355 -2.960203927 [146] -1.586500291 -1.439020448 -1.319007435 -1.319007435 -1.045687198 [151] -0.843212966 -0.674750780 -0.486352595 -4.917102738 -7.272853619 [156] -5.561609017 -5.060813891 -5.060813891 -0.585610542 -6.004112464 [161] -11.600094445 -11.600094445 -11.429736315 -8.789418304 -8.789418304 [166] -9.022404924 -8.248227086 -8.365220548 -11.345148782 -11.345148782 [171] -5.410138061 -1.186501047 -1.186501047 3.036065421 3.080638135 [176] 0.009671833 -3.028438832 -3.784691428 -3.784691428 -0.323914500 [181] -0.429896123 -0.593245718 -0.595995429 4.804224486 4.804224486 [186] 4.726155636 3.285862735 -6.881177886 -7.078638908 -7.078638908 [191] -7.078638908 -5.665944644 -0.097786577 -0.097786577 0.881467195 [196] 1.752415664 2.470806814 2.470806814 2.470806814 0.572792875 [201] -9.668342087 -10.167062816 -10.167062816 -8.873261509 -10.206268617 [206] -10.206268617 -10.206268617 -14.076736325 -10.360020789 -10.360020789 [211] 2.150114949 2.150114949 10.575954874 10.443293079 10.009323008 [216] 10.009323008 8.414798637 2.153241399 1.433253426 1.228776835 [221] 1.228776835 0.181607020 0.356020616 0.593026405 1.018930137 [226] -1.112264851 -0.138821251 -0.138821251 -0.138821251 0.102279588 [231] 0.102279588 0.102279588 -3.806776674 -7.342255969 -7.262605531 [236] -7.262605531 -7.262605531 -3.658742727 -0.898573541 -0.898573541 [241] -0.891854125 -0.839156474 -1.252384566 -1.252384566 -1.292131879 [246] -1.391833255 1.495845480 -2.399289314 -5.949774104 -5.949774104 [251] -7.292534191 -6.551564117 -5.420178942 -5.420178942 -5.318459732 [256] 3.399451209 5.532540254 5.959561525 5.959561525 2.457833229 [261] 2.457833229 -0.207421766 -5.423594026 -6.691751887 -6.691751887 [266] -6.691751887 -6.691751887 -4.659718421 -4.503303580 -5.528144839 [271] -5.808326743 -5.732554621 -5.426011893 -2.631714518 -0.820876216 [276] -0.746736618 -9.251780253 -8.176387218 -6.106774697 -6.106774697 [281] -3.105086409 -5.723660721 -6.958433412 -6.958433412 -8.895874946 [286] -3.553626098 -2.586333187 -2.586333187 1.654872968 -0.808738906 [291] -2.052404915 -2.052404915 -4.349633657 -10.165766975 -9.926875224 [296] -9.550299652 -9.217362469 -0.082730162 -0.082730162 -0.082730162 [301] -2.742643386 -1.274914851 -1.274914851 -1.274914851 0.007486056 [306] -1.574564984 -4.891459172 -4.891459172 -4.891459172 -1.608350308 [311] 0.869140678 -0.679045060 -1.957155214 -2.878625310 -7.299177931 [316] -7.435825467 -7.592200555 -7.592200555 -5.712778519 -5.712778519 [321] -5.712778519 -5.712778519 -5.630253832 -6.233261829 -6.484065144 [326] -6.635086958 -8.348255687 -9.277905679 -8.723027822 -2.842992867 [331] -0.959772147 6.454477578 5.974300862 -6.057803013 -11.126995868 [336] -13.626348597 -2.748396405 -1.815587294 -2.096468513 -2.701688874 [341] -5.080376156 -6.375236956 -6.375236956 -5.797282022 -14.595355833 [346] -15.193056954 -15.193056954 -17.934420522 -17.374704845 -11.238616024 [351] -8.941593916 -3.492922872 -3.492922872 -3.492922872 -3.492922872 [356] -2.912211280 -1.840360561 -1.840360561 -1.840360561 -1.824786921 [361] -1.759964965 -1.759964965 -1.759964965 -1.759964965 -3.341088388 [366] -3.341088388 -3.341088388 -3.341088388 -6.246923454 -5.619101142 [371] -5.619101142 -5.619101142 -6.080918146 -6.753632217 -7.623147845 [376] -8.071395151 -8.197125014 -8.764292839 -8.764292839 -8.764292839 [381] -12.298016019 -16.282018946 -16.282018946 -16.282018946 -13.800211876 [386] -3.687182200 -3.687182200 -3.687182200 -3.687182200 -0.194737390 [391] -4.288019632 -5.651933291 -6.102650863 -6.470498888 -6.997280323 [396] -6.997280323 -6.997280323 -6.997280323 -7.097410851 -6.895442946 [401] -6.735478949 -6.638314614 -8.150798864 -8.150798864 -8.150798864 [406] -8.136611428 -14.320091543 -11.121335663 -9.982577034 -9.982577034 [411] -4.040090912 -3.515602067 -3.555763482 -6.724605662 -9.146340652 [416] -9.028934328 -9.028934328 -9.028934328 -9.028934328 -2.531562776 [421] -2.531562776 -2.531562776 0.014394148 -10.996361729 -10.996361729 [1] 43.77473 44.85057 45.61716 46.73753 47.62803 48.53581 49.71098 [8] 50.95663 52.10049 53.42975 54.85079 56.38963 57.94693 59.47948 [15] 60.88914 62.58281 64.50824 66.10479 67.59187 68.78607 70.77286 [22] 72.44699 74.79690 77.58327 80.95180 84.40575 89.04453 92.44987 [29] 95.69720 98.42367 100.44257 102.21473 103.66870 104.74114 106.06954 [36] 107.59969 109.45335 111.64588 114.50200 117.56575 120.78806 123.75466 [43] 126.55877 129.06650 131.57431 134.28088 136.79843 139.24856 141.49592 [50] 143.97939 146.42942 148.92968 151.91441 154.59356 157.18897 159.75819 [57] 163.15428 165.94406 169.17576 172.79570 175.90866 178.87911 181.78903 [64] 184.68490 187.29625 190.03323 192.42983 194.35521 196.18117 198.07617 [71] 199.64418 201.08952 202.65092 204.36679 206.19055 208.06492 210.39281 [78] 213.18016 215.42225 217.83939 220.17438 222.71107 224.86061 227.19496 [85] 229.36433 232.14838 234.63803 237.24152 239.92912 242.77963 245.33541 [92] 248.44507 251.22634 253.83397 256.09893 258.46706 260.57094 262.46011 [99] 264.25039 265.85313 267.38728 269.15864 271.07226 272.91680 274.84851 [106] 276.80040 278.74927 280.60715 282.37256 284.21641 286.22877 288.17620 [113] 290.33455 292.19050 294.10882 296.07903 297.84735 299.78570 301.82337 [120] 303.58520 305.77831 307.72899 309.70204 311.65070 313.59115 315.45168 [127] 317.27511 318.74724 320.20589 321.10320 321.71901 322.11569 322.38731 [134] 322.62032 322.90543 323.56054 324.28224 325.21204 326.11888 326.78385 [141] 327.24569 327.49656 327.72413 328.01831 328.41254 328.93817 329.65275 [148] 330.45875 331.26629 332.11829 332.90451 333.81109 334.45921 335.14345 [155] 335.72860 336.56188 337.62610 338.92918 340.49211 342.00171 344.07445 [162] 345.81716 347.94818 350.24599 352.48610 354.99291 357.49952 360.01457 [169] 362.66699 365.04319 367.53572 369.84472 372.18750 374.31023 376.28656 [176] 378.27612 379.98995 381.79348 383.13972 384.88539 386.18845 387.42819 [183] 388.42517 389.76704 390.81461 391.70235 392.47647 393.17844 393.84266 [190] 394.46619 395.22001 395.67880 396.45439 397.03139 397.97151 398.67078 [197] 399.89284 401.05906 402.30959 403.64040 405.12870 406.39562 408.19984 [204] 409.94598 412.16290 414.00142 415.65865 417.51523 419.58083 421.41623 [211] 423.21849 425.05534 426.70573 428.27581 429.63784 431.01089 432.50668 [218] 433.68440 434.75954 435.71267 436.60996 437.38095 438.15657 438.82545 [225] 439.42125 440.00525 440.65959 441.38046 442.06468 443.03530 443.84953 [232] 444.61685 445.35027 446.28318 447.14919 448.18796 449.41120 450.55891 [239] 451.89578 453.65671 455.24728 456.81061 458.47653 460.22596 461.90581 [246] 463.51624 465.37330 467.07569 468.57064 470.10924 471.58933 472.96123 [253] 474.28179 475.52925 476.61900 477.90154 478.88901 479.84001 480.67384 [260] 481.46371 482.30708 483.06819 483.62630 484.41549 485.08601 485.75891 [267] 486.40848 487.13914 488.02140 488.92162 489.76780 491.04108 492.29566 [274] 493.70257 495.05326 496.39133 497.85974 499.22442 500.76292 502.17008 [281] 503.64770 505.03446 506.48562 507.74617 509.04675 510.36629 511.57119 [288] 512.85368 514.08614 515.22048 516.28867 517.18953 518.19892 519.04489 [295] 519.94677 520.81876 521.83599 522.84740 523.95951 524.99622 525.98434 [302] 527.02286 527.97591 528.91661 529.89113 530.84592 531.90510 532.69038 [309] 533.44975 534.02803 534.48341 534.94766 535.33092 535.70026 536.09864 [316] 536.43499 536.88511 537.28034 537.74073 538.29633 538.79241 539.31137 [323] 539.91266 540.61367 541.29226 542.06721 542.95633 543.84696 544.90173 [330] 546.05095 547.13951 548.50912 549.74512 550.98024 552.61177 554.21006 [337] 555.42621 556.75145 558.04347 559.19009 560.49600 561.86888 562.80943 [344] 564.08462 565.28028 566.21508 567.18302 568.26571 569.00304 569.83468 [351] 570.57322 571.09868 571.51732 571.77729 571.90149 571.89649 571.80603 [358] 571.68886 571.51431 571.36838 571.24163 571.27000 571.32069 571.47148 [365] 571.78678 572.11082 572.75022 573.40094 574.13573 574.89794 575.71898 [372] 576.46942 577.21742 578.01887 578.76296 579.60778 580.27143 581.18212 [379] 582.00871 582.77581 583.68115 584.66313 585.73679 586.58702 587.56067 [386] 588.46652 589.39720 590.27396 591.06039 591.88855 592.58683 593.23167 [393] 593.81674 594.31785 594.81928 595.24852 595.68635 596.05676 596.48098 [400] 596.92565 597.40509 597.92131 598.44157 598.97509 599.69333 600.46199 [407] 601.26687 602.26667 602.92487 603.67097 604.40567 605.04060 605.61530 [414] 606.05312 606.44901 606.76545 607.06586 607.34938 607.73827 608.21248 [421] 608.79406 609.59312 610.50802 611.48216 612.60174 [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Not reporting 32 O2 values from manual exclude period 132.893073 to 132.893949" [1] "Not reporting 32 APO values from manual exclude period 132.893073 to 132.893949" [1] "Not reporting 76 smoothed O2 values from manual exclude period 132.892463192727 to 132.893343528194" [1] "Not reporting 76 smoothed APO values from manual exclude period 132.892463192727 to 132.893343528194" [1] "Not reporting 76 smoothed O2 values from manual exclude period 132.892463192727 to 132.893343528194" [1] "Not reporting 76 smoothed APO values from manual exclude period 132.892463192727 to 132.893343528194" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1805/AO2_DC8_20180512_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 143584 items [1] 8 3591 35896 [1] "done reading AO2" [1] 2018 2018 2018 2018 2018 2018 [1] 114 114 114 114 114 114 [1] 53100 53110 53120 53130 53140 53150 [1] "2018-04-24 14:45:00 UTC" "2018-04-24 14:45:10 UTC" [3] "2018-04-24 14:45:20 UTC" "2018-04-24 14:45:30 UTC" [5] "2018-04-24 14:45:40 UTC" "2018-04-24 14:45:50 UTC" [1] -365.5911 -367.2060 -360.4190 -361.1360 -355.4650 -359.0650 [1] 34819 [1] "Average Date / Time for slice RF08 = 2018-05-12 16:24:40.15625" [1] "sum(lsel) = 2944" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 0.496 793.453 [1] 0.496 793.453 [1] 206.547 999.504 [1] 8.571429e-03 9.999990e+05 [1] "highestmid = 724.802" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM4 RF08 APO_AO2 range = -347.34,-323.2" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1805/AO2_DC8_20180512_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 143584 items [1] 8 3591 35896 [1] "done reading AO2" [1] 2018 2018 2018 2018 2018 2018 [1] 114 114 114 114 114 114 [1] 53100 53110 53120 53130 53140 53150 [1] "2018-04-24 14:45:00 UTC" "2018-04-24 14:45:10 UTC" [3] "2018-04-24 14:45:20 UTC" "2018-04-24 14:45:30 UTC" [5] "2018-04-24 14:45:40 UTC" "2018-04-24 14:45:50 UTC" [1] -713.9589 -708.0490 -698.7280 -696.3380 -691.0040 -693.9890 [1] 34829 [1] "Average Date / Time for slice RF08 = 2018-05-12 16:24:42.1154499053955" [1] "sum(lsel) = 2945" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 0.496 793.453 [1] 0.496 793.453 [1] 206.547 999.504 [1] 8.571429e-03 9.999990e+05 [1] "highestmid = 724.802" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM4 RF08 O2_AO2 range = -657.64,-612.23" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1805/AO2_DC8_20180512_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 143584 items [1] 8 3591 35896 [1] "done reading AO2" [1] 2018 2018 2018 2018 2018 2018 [1] 114 114 114 114 114 114 [1] 53100 53110 53120 53130 53140 53150 [1] "2018-04-24 14:45:00 UTC" "2018-04-24 14:45:10 UTC" [3] "2018-04-24 14:45:20 UTC" "2018-04-24 14:45:30 UTC" [5] "2018-04-24 14:45:40 UTC" "2018-04-24 14:45:50 UTC" [1] 416.3167 414.8841 414.4018 413.8102 413.8745 413.7575 [1] 34999 [1] "Average Date / Time for slice RF08 = 2018-05-12 16:24:34.2789278030396" [1] "sum(lsel) = 2947" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 0.496 793.453 [1] 0.496 793.453 [1] 206.547 999.504 [1] 8.571429e-03 9.999990e+05 [1] "highestmid = 724.802" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM4 RF08 CO2_AO2 range = 404.3,409.31" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "making html" [1] "making index html"