[1] "2025-05-13 16:49:03 MDT" options [1,] "file" "180413a" [2,] "flight" "TF02" [3,] "project" "ATOM4" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "7" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "TRUE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "full" [48,] "o2caltype" "full" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "TRUE" [64,] "icartt" "lookup" [65,] "icarttrev" "1" [66,] "mmsrev" "TRUE" [67,] "usespline" "4pt" [68,] "updnave" "180413a" [1] "Reading in flight and plotting intervals" Read 17 records [1] "Reading in /scr/raf/stephens/AO2DAT/180413a.mr" Read 14931 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.33 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.36 seconds" [1] "New JOGEST = 2.36 seconds" [1] "New VALVE SKIP = 25 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/180413a.hr" Read 59724 records [1] "HR FILE MATCHES" [1] "Converting hrdata statout" [1] "Tue May 13 04:49:03 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30762 description: HS CO2 = 400.74 O2 = -586.9" [1] "position 2 cylinder OK30768 description: LS CO2 = 423.76 O2 = -828.7" [1] "position 3 cylinder OK30772 description: LT CO2 = 393.41 O2 = -581.9" [1] "position 4 cylinder OK30766 description: WT CO2 = 409.51 O2 = -899.3" [1] "position 5 cylinder OK30769 description: LP CO2 = 408.97 O2 = -885.5" [1] 400.7440 423.7561 393.4069 409.5125 408.9696 [1] -586.8663 -828.7108 -581.9385 -899.2874 -885.4667 [1] "Nominal linear calibrations:" [1] "co2scl = 0.86 co2off = 52.95 o2scla = -0.056 o2offa = -154.1" [1] "(dV/V)/(dXO2/XO2) = -3.768" [1] "(dV/V)/d(O2/N2) = -2.979" [1] "Reading in very high resolution timeseries" Read 298620 records [1] 298620 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 04:49:04 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 04:49:05 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -2.979" [1] "o2scaleavenew_drelVdrelP = -3.768" [1] "median(o2scalenew) = -2.979" [1] "Empirical dV/V vs dP/P relationship =-4.076, r^2 =0.254, damping =1.082" [1] "Tue May 13 04:49:06 PM MDT 2025 done redoing corrections" [1] "NON-INTEGER NGAS IN JOGAVES AT:" [1] 1778 14360 $icochar [1] "0" "0" "24:15:49" "103.682180" "103.682180" [6] "103.750522" "103.820084" "103.858404" "103.877198" "103.908440" [11] "103.927478" "103.979466" "103.827650" "103.880615" "21:24:00" [16] "16:45:00" "23:30:00" $ecochar [1] "367" "16:01:42" "367" "24:15:49" "103.750522" [6] "103.835217" "103.858404" "103.881347" "103.908440" "103.931871" [11] "103.979466" "104.011197" "103.865726" "103.882079" "21:34:00" [16] "17:35:00" "23:50:00" $flag [1] "all" "LP" "LP" "flight" [5] "a" "b" "c" "d" [9] "e" "f" "g" "h" [13] "donotreporto2" "donotreporto2" "MMS" "SPD1" [17] "SPD2" $ico2 [1] 0.0000 0.0000 104.0110 103.6822 103.6822 103.7505 103.8201 103.8584 [9] 103.8772 103.9084 103.9275 103.9795 103.8277 103.8806 103.8917 103.6979 [17] 103.9792 $eco2 [1] 367.0000 103.6678 367.0000 104.0110 103.7505 103.8352 103.8584 103.8813 [9] 103.9084 103.9319 103.9795 104.0112 103.8657 103.8821 103.8986 103.7326 [17] 103.9931 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 1777 1777 103.6678 8.251577 -0.00098485 0.00484540 0.00484540 1777 1778 1778 103.6678 8.251691 -0.00081075 0.00519005 0.00519005 1778 1779 1779 103.6679 8.250719 -0.00093460 0.00489975 0.00489975 1779 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 1777 10.5 6.00 20.00 6090.50 -1 8.254112 8.253690 1778 10.5 4.75 20.25 4581.75 1 8.254312 8.253964 1779 10.5 1.00 21.00 15.50 -1 8.253257 8.252857 vuvsigpdprcorr 1777 8.251613 1778 8.251739 1779 8.250756 [1] 0.6678137 0.6678407 0.6678677 [,1] [,2] [,3] [1,] 0.667825 -1 6 [2,] 0.667834 1 6 [3,] 0.667840 1 6 [4,] 0.667846 1 6 [5,] 0.667852 1 1 [6,] 0.667861 -1 1 [7,] 0.667867 -1 1 [8,] 0.667873 -1 1 [9,] 0.667879 -1 1 [10,] 0.667889 1 1 [11,] 0.667895 1 1 [12,] 0.667900 1 1 [13,] 0.667906 1 1 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 14359 14359 104.011 7.946647 -0.00079225 0.01517295 0.01517295 14359 14360 14360 104.011 7.950982 -0.00089155 0.01500710 0.01500710 14360 14361 14361 104.011 7.946751 -0.00200305 0.01443085 0.01443085 14361 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 14359 10.5 1.00 59.00 33910.50 -1 7.953443 7.953110 14360 10.5 4.75 59.75 8486.75 1 7.957775 7.957398 14361 10.5 6.00 60.00 25.50 -1 7.953765 7.952924 vuvsigpdprcorr 14359 7.946745 14360 7.951100 14361 7.946872 [1] 1.010960 1.010987 1.011014 [,1] [,2] [,3] [1,] 1.010971 -1 1 [2,] 1.010981 1 1 [3,] 1.010986 1 6 [4,] 1.010992 1 6 [5,] 1.010998 1 6 [6,] 1.011007 -1 6 [7,] 1.011013 -1 6 [8,] 1.011019 -1 6 [9,] 1.011025 -1 6 [10,] 1.011035 1 6 [11,] 1.011041 1 6 [12,] 1.011046 1 6 [13,] 1.011052 1 6 [1] "NON-INTEGER NGASNUM IN JOGAVES AT:" [1] 1778 14360 $icochar [1] "0" "0" "24:15:49" "103.682180" "103.682180" [6] "103.750522" "103.820084" "103.858404" "103.877198" "103.908440" [11] "103.927478" "103.979466" "103.827650" "103.880615" "21:24:00" [16] "16:45:00" "23:30:00" $ecochar [1] "367" "16:01:42" "367" "24:15:49" "103.750522" [6] "103.835217" "103.858404" "103.881347" "103.908440" "103.931871" [11] "103.979466" "104.011197" "103.865726" "103.882079" "21:34:00" [16] "17:35:00" "23:50:00" $flag [1] "all" "LP" "LP" "flight" [5] "a" "b" "c" "d" [9] "e" "f" "g" "h" [13] "donotreporto2" "donotreporto2" "MMS" "SPD1" [17] "SPD2" $ico2 [1] 0.0000 0.0000 104.0110 103.6822 103.6822 103.7505 103.8201 103.8584 [9] 103.8772 103.9084 103.9275 103.9795 103.8277 103.8806 103.8917 103.6979 [17] 103.9792 $eco2 [1] 367.0000 103.6678 367.0000 104.0110 103.7505 103.8352 103.8584 103.8813 [9] 103.9084 103.9319 103.9795 104.0112 103.8657 103.8821 103.8986 103.7326 [17] 103.9931 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 1777 1777 103.6678 8.251577 -0.00098485 0.00484540 0.00484540 1777 1778 1778 103.6678 8.251691 -0.00081075 0.00519005 0.00519005 1778 1779 1779 103.6679 8.250719 -0.00093460 0.00489975 0.00489975 1779 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 1777 10.5 6.00 20.00 6090.50 -1 8.254112 8.253690 1778 10.5 4.75 20.25 4581.75 1 8.254312 8.253964 1779 10.5 1.00 21.00 15.50 -1 8.253257 8.252857 vuvsigpdprcorr 1777 8.251613 1778 8.251739 1779 8.250756 [1] 0.6678137 0.6678407 0.6678677 [,1] [,2] [,3] [1,] 0.667825 -1 6 [2,] 0.667834 1 6 [3,] 0.667840 1 6 [4,] 0.667846 1 6 [5,] 0.667852 1 1 [6,] 0.667861 -1 1 [7,] 0.667867 -1 1 [8,] 0.667873 -1 1 [9,] 0.667879 -1 1 [10,] 0.667889 1 1 [11,] 0.667895 1 1 [12,] 0.667900 1 1 [13,] 0.667906 1 1 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 14359 14359 104.011 7.946647 -0.00079225 0.01517295 0.01517295 14359 14360 14360 104.011 7.950982 -0.00089155 0.01500710 0.01500710 14360 14361 14361 104.011 7.946751 -0.00200305 0.01443085 0.01443085 14361 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 14359 10.5 1.00 59.00 33910.50 -1 7.953443 7.953110 14360 10.5 4.75 59.75 8486.75 1 7.957775 7.957398 14361 10.5 6.00 60.00 25.50 -1 7.953765 7.952924 vuvsigpdprcorr 14359 7.946745 14360 7.951100 14361 7.946872 [1] 1.010960 1.010987 1.011014 [,1] [,2] [,3] [1,] 1.010971 -1 1 [2,] 1.010981 1 1 [3,] 1.010986 1 6 [4,] 1.010992 1 6 [5,] 1.010998 1 6 [6,] 1.011007 -1 6 [7,] 1.011013 -1 6 [8,] 1.011019 -1 6 [9,] 1.011025 -1 6 [10,] 1.011035 1 6 [11,] 1.011041 1 6 [12,] 1.011046 1 6 [13,] 1.011052 1 6 [1] "JOGAVES DOES NOT MATCH" [1] "Plotting Jog Shapes" [1] "Tue May 13 04:49:49 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 2238180.968448 SECONDS" [1] "Tue May 13 04:49:49 PM MDT 2025 done recreating mr o2diffs" [1] "Removed 1 medium-rate record(s) with accumulation errors" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 161.183 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) -39.232 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) -39 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 21.609 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 0 [1] 108 [1] 148 [1] 148 [1] 148 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 68 103.6214 -39.195708 1032403.4 -1 [2,] 69 103.6215 -415.271981 1032463.1 1 [3,] 70 103.6215 -777.664720 1031661.3 -1 [4,] 130 103.6231 -892.586935 1032200.0 -1 [5,] 131 103.6231 -630.617128 1033136.1 1 [6,] 132 103.6232 -308.924975 1032864.1 -1 [7,] 134 103.6232 -2.306265 1033173.0 -1 [8,] 194 103.6248 -142.666893 1033527.0 -1 [9,] 195 103.6248 -495.672668 1033694.1 1 [10,] 196 103.6249 -830.996796 1032838.4 -1 [11,] 256 103.6265 -936.166991 1033200.2 -1 [12,] 257 103.6265 -687.459830 1034175.8 1 [13,] 258 103.6265 -376.586172 1033819.1 -1 [14,] 260 103.6266 -136.266796 1034052.9 -1 [15,] 390 103.6301 -189.921021 1035009.3 -1 [16,] 391 103.6301 -502.953568 1035227.9 1 [17,] 392 103.6302 -814.687498 1034388.6 -1 [18,] 454 103.6319 -786.135535 1034864.6 -1 [19,] 455 103.6319 -498.462807 1035673.7 1 [20,] 456 103.6319 -211.349486 1035462.7 -1 [21,] 644 103.6370 -90.827678 1036825.9 -1 [22,] 645 103.6371 -348.263787 1036932.9 1 [23,] 646 103.6371 -640.494478 1036240.3 -1 [24,] 708 103.6388 -896.171005 1036264.0 -1 [25,] 709 103.6388 -675.115460 1037198.2 1 [26,] 710 103.6388 -395.551872 1036822.2 -1 [27,] 712 103.6389 -146.798650 1037065.7 -1 [28,] 1028 103.6475 -156.835594 1037546.6 -1 [29,] 1029 103.6475 -484.729729 1037715.6 1 [30,] 1030 103.6475 -813.281055 1036862.7 -1 [31,] 1156 103.6509 -795.732979 1036594.7 -1 [32,] 1157 103.6510 -468.196323 1037399.2 1 [33,] 1158 103.6510 -162.930205 1037233.5 -1 [34,] 1284 103.6544 -80.104584 1036858.7 -1 [35,] 1285 103.6544 -328.171229 1036940.7 1 [36,] 1286 103.6545 -625.280065 1036246.1 -1 [37,] 1288 103.6545 -843.210497 1036025.5 -1 [38,] 1348 103.6561 -900.696383 1035710.5 -1 [39,] 1349 103.6562 -661.303738 1036644.9 1 [40,] 1350 103.6562 -377.675836 1036279.5 -1 [41,] 1352 103.6563 -151.074051 1036482.3 -1 [42,] 2176 103.6788 1612.794307 1012007.5 -1 [43,] 2177 103.6788 1984.278423 1010307.4 1 [44,] 2178 103.6788 2295.091346 1012604.5 -1 [45,] 2188 103.6791 2108.482695 1012072.8 -1 [46,] 2189 103.6791 2490.006936 1009874.9 1 [47,] 2190 103.6792 2792.942031 1012693.8 -1 [48,] 2194 103.6793 2565.851826 1012295.1 -1 [49,] 2195 103.6793 2299.955709 1009671.5 1 [50,] 2196 103.6793 2121.277441 1011790.2 -1 [51,] 2198 103.6794 2395.870939 1012043.3 -1 [52,] 2199 103.6794 2717.177561 1009567.1 1 [53,] 2200 103.6794 2969.538799 1012566.0 -1 [54,] 2204 103.6795 2987.385877 1012440.9 -1 [55,] 2205 103.6796 2745.425853 1009389.8 1 [56,] 2206 103.6796 2470.662048 1011852.8 -1 [57,] 2216 103.6799 2138.036520 1011280.6 -1 [58,] 2217 103.6799 1926.258650 1009093.3 1 [59,] 2218 103.6799 1694.999007 1010775.6 -1 [60,] 2244 103.6806 1704.809797 1010187.2 -1 [61,] 2245 103.6807 1477.144371 1008453.0 1 [62,] 2246 103.6807 1242.097934 1009684.8 -1 [63,] 2550 103.6890 -570.787546 1003987.4 -1 [64,] 2556 103.6892 -140.026080 1004366.8 -1 [65,] 2616 103.6908 -127.964623 1003761.2 -1 [66,] 2617 103.6908 -407.340010 1003877.5 1 [67,] 2618 103.6909 -713.641562 1003125.5 -1 [68,] 4260 103.7357 -665.490538 994488.5 -1 [69,] 4266 103.7358 -906.755910 994099.1 -1 [70,] 4326 103.7375 -918.090334 992449.7 -1 [71,] 4327 103.7375 -626.626931 993341.9 1 [72,] 4328 103.7375 -305.624982 993035.5 -1 [73,] 4390 103.7392 -324.663761 991424.7 -1 [74,] 4391 103.7392 -629.963332 991750.5 1 [75,] 4392 103.7393 -908.124907 990823.3 -1 [76,] 4452 103.7409 -975.652025 989452.2 -1 [77,] 4453 103.7409 -606.662050 990395.3 1 [78,] 4454 103.7409 -183.965157 990216.8 -1 [79,] 5530 103.7704 -672.807555 993111.8 -1 [80,] 5536 103.7705 -299.619859 993720.4 -1 [81,] 5538 103.7706 -132.792368 993945.8 -1 [82,] 5600 103.7723 -871.671655 995489.2 -1 [83,] 6408 103.7943 -687.962162 1012906.4 -1 [84,] 6414 103.7945 -900.130681 1012545.4 -1 [85,] 6476 103.7962 -808.901140 1010816.6 -1 [86,] 6477 103.7962 -496.818404 1011586.6 1 [87,] 6478 103.7962 -193.460459 1011372.8 -1 [88,] 6604 103.7996 -142.971739 1007284.8 -1 [89,] 6605 103.7997 -398.860280 1007417.2 1 [90,] 6606 103.7997 -641.765601 1006734.3 -1 [91,] 7726 103.8303 -518.130886 1002101.2 -1 [92,] 7732 103.8305 -145.605540 1002583.1 -1 [93,] 7794 103.8322 -587.665971 1003324.2 -1 [94,] 7796 103.8322 -876.016087 1003099.8 -1 [95,] 9000 103.8650 -692.477475 995448.5 -1 [96,] 9068 103.8668 -924.094599 993740.9 -1 [97,] 9069 103.8669 -638.297101 994648.2 1 [98,] 9070 103.8669 -335.617619 994322.6 -1 [99,] 9196 103.8703 2.812246 992886.6 -1 [100,] 9197 103.8703 -220.446754 992869.4 1 [101,] 9198 103.8704 -488.645319 992351.2 -1 [102,] 9860 103.8883 -611.599092 990991.3 -1 [103,] 9866 103.8885 -276.954617 991417.7 -1 [104,] 9928 103.8902 -142.308945 992356.5 -1 [105,] 9929 103.8902 -395.450548 992511.6 1 [106,] 9930 103.8902 -692.996021 991809.4 -1 [107,] 10432 103.9039 -676.179730 997123.5 -1 [108,] 10438 103.9040 -191.933481 997651.8 -1 [109,] 10500 103.9057 -348.865221 997507.4 -1 [110,] 10502 103.9058 -877.806191 997010.9 -1 [111,] 10628 103.9092 -506.940866 997257.2 -1 [112,] 10630 103.9092 -48.647333 997677.1 -1 [113,] 11710 103.9386 -631.061180 998345.8 -1 [114,] 11716 103.9388 -899.098803 998130.6 -1 [115,] 11778 103.9404 -807.627863 998922.9 -1 [116,] 11779 103.9405 -489.925726 999723.3 1 [117,] 11780 103.9405 -192.932766 999553.2 -1 [118,] 12472 103.9594 -629.552228 1005104.3 -1 [119,] 12478 103.9596 -169.663026 1005569.2 -1 [120,] 12540 103.9613 -257.889780 1005323.1 -1 [121,] 12541 103.9613 -536.960059 1005596.6 1 [122,] 12542 103.9613 -868.501877 1004709.9 -1 [123,] 12604 103.9630 -761.243268 1004593.0 -1 [124,] 12605 103.9630 -400.462918 1005330.5 1 [125,] 12606 103.9631 -69.138899 1005266.2 -1 [126,] 14360 104.0110 -539.151681 986446.2 -1 [127,] 14378 104.0115 -942.595246 986189.8 -1 [128,] 14379 104.0115 -1382.497184 987172.5 1 [129,] 14380 104.0116 -1739.804935 985459.1 -1 [130,] 14384 104.0117 -1301.343268 985951.4 -1 [131,] 14386 104.0117 -919.421607 986353.9 -1 [132,] 14388 104.0118 -596.516375 986691.2 -1 [133,] 14390 104.0118 -377.994706 986952.1 -1 [134,] 14392 104.0119 -195.039469 987159.2 -1 [135,] 14674 104.0196 -132.081156 996215.2 -1 [136,] 14675 104.0196 -482.020377 996405.3 1 [137,] 14676 104.0196 -831.592923 995608.7 -1 [138,] 14736 104.0213 -939.663927 998171.0 -1 [139,] 14737 104.0213 -649.046291 999158.1 1 [140,] 14738 104.0213 -317.631900 998907.4 -1 [141,] 14740 104.0214 -115.265535 999182.5 -1 [142,] 14800 104.0230 -224.887014 1001577.1 -1 [143,] 14801 104.0231 -568.855852 1001853.3 1 [144,] 14802 104.0231 -893.202330 1000992.4 -1 [145,] 14862 104.0247 -959.614510 1003291.5 -1 [146,] 14863 104.0247 -617.741998 1004295.1 1 [147,] 14864 104.0248 -240.417368 1004124.9 -1 [148,] 14866 104.0248 -32.728595 1004391.2 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 13562 103.9892 104120.6 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 161.183 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) -33.36 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) -33.493 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 21.609 PER MEG" [1] 400.7440 423.7561 393.4069 409.5125 408.9696 [1] -586.8663 -828.7108 -581.9385 -899.2874 -885.4667 [1] "Nominal linear calibrations:" [1] "co2scl = 0.86 co2off = 52.95 o2scla = -0.055 o2offa = -154.1" [1] "(dV/V)/(dXO2/XO2) = -3.776" [1] "(dV/V)/d(O2/N2) = -2.985" [1] "Finding cal and sample periods" [1] "Median Cal: 2.44 minutes" [1] "Average Cal: 2.38 minutes" [1] "Shortest Cal: 0.31 minutes" [1] "Longest Cal: 5 minutes" [1] "Removed 3 calibration period(s) with less than 30 seconds of data" [1] "at: 18" [1] "at: 43" [1] "at: 60" [1] "Reading in aircraft data" [1] "Reading /scr/raf/stephens/HUMERGE/ATOM4/MMS/MMS-1HZ_DC8_20180413_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 17 items Read 17 items Read 1 item Read 1 item Read 18 items Read 510876 items [1] "Reading /scr/raf/stephens/HUMERGE/ATOM4/MMS/MMS-20Hz_DC8_20180413_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 25 items Read 25 items Read 1 item Read 1 item Read 26 items Read 14775618 items [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.00542" [1] "HS CO2 vs. PACAB: m = -0.00508, r^2 = 0.51" [1] "LS CO2 vs. PACAB: m = -0.00576, r^2 = 0.62" [1] "HS+LS LIH2O vs. PACAB: m = -1.24e-05" [1] "HS LIH2O vs. PACAB: m = -2.15e-06, r^2 = 0" [1] "LS LIH2O vs. PACAB: m = -2.26e-05, r^2 = 0.04" [1] "HS+LS CO2 vs. LIH2O: m = 14.6" [1] "HS CO2 vs. LIH2O: m = 16.3, r^2 = 0.04" [1] "LS CO2 vs. LIH2O: m = 12.9, r^2 = 0.05" [1] "APCO2 vs. PACAB: m = -0.035, r^2 = 0.09" [1] "Correcting for PCAB effect on LI840 using average of HS and LS fits = -0.00542" [1] "HS+LS CO2 vs. PACAB postcorr: m = 0.000593" [1] "HS CO2 vs. PACAB postcorr: m = 0.00101, r^2 = 0.05" [1] "LS CO2 vs. PACAB postcorr: m = 0.000172, r^2 = 0" [1] "HS+LS LIH2O vs. PACAB postcorr: m = 5.75e-19" [1] "HS LIH2O vs. PACAB postcorr: m = 1.02e-05, r^2 = 0.03" [1] "LS LIH2O vs. PACAB postcorr: m = -1.02e-05, r^2 = 0.01" [1] "HS+LS CO2 vs. LIH2O postcorr: m = 15.3" [1] "HS CO2 vs. LIH2O postcorr: m = 18.4, r^2 = 0.06" [1] "LS CO2 vs. LIH2O postcorr: m = 12.2, r^2 = 0.07" [1] "APCO2 vs. PACAB postcorr: m = -0.0307, r^2 = 0.06" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 0.00887" [1] "HS O2 vs. PACAB: m = 0.00315, r^2 = 0" [1] "LS O2 vs. PACAB: m = 0.0146, r^2 = 0.01" [1] "HS+LS O2 vs. LIH2O: m = 370" [1] "HS O2 vs. LIH2O: m = -21.4, r^2 = 0" [1] "LS O2 vs. LIH2O: m = 762, r^2 = 0.28" [1] "HS+LS O2 vs. PAO2: m = 0.401" [1] "HS O2 vs. PAO2: m = -6.78, r^2 = 0.45" [1] "LS O2 vs. PAO2: m = 7.58, r^2 = 0.15" [1] "HS+LS O2 vs. TPBOX: m = -0.0368" [1] "HS O2 vs. TPBOX: m = 0.771, r^2 = 0.1" [1] "LS O2 vs. TPBOX: m = -0.845, r^2 = 0.04" [1] "APO vs. PACAB: m = 0.404, r^2 = 0.06" [1] "APO vs. PAO2: m = -37.6, r^2 = 0.06" [1] "APO vs. TPBOX: m = 11.3, r^2 = 0.05" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 0.00164, r^2 = 0" [1] "LS CO2 vs. LiCor Cell P: m = -0.059, r^2 = 0.01" [1] "HS CO2 vs. CO2 Vol P: m = 0.506, r^2 = 0.35" [1] "LS CO2 vs. CO2 Vol P: m = 0.462, r^2 = 0.27" [1] "HS CO2 vs. SLOPE: m = 0.0466, r^2 = 0" [1] "LS CO2 vs. SLOPE: m = 0.526, r^2 = 0.15" [1] "HS O2 vs. O2 Vol P: m = -4.68, r^2 = 0.13" [1] "LS O2 vs. O2 Vol P: m = 14.9, r^2 = 0.04" [1] "HS O2 vs. O2 Cell T: m = 0.886, r^2 = 0.02" [1] "LS O2 vs. O2 Cell T: m = -11.8, r^2 = 0.09" [1] "HS O2 vs. CO2 Vol P: m = -8.79, r^2 = 0.34" [1] "LS O2 vs. CO2 Vol P: m = -0.931, r^2 = 0" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = 1.68, r^2 = 0.14" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = -13.3, r^2 = 0.26" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -8.79, r^2 = 0.34" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -0.931, r^2 = 0" [1] "HS O2 vs. LIH2O: m = 451, r^2 = 0.17" [1] "LS O2 vs. LIH2O: m = 2960, r^2 = 0.47" [1] "HS O2 vs. SLOPE: m = -0.435, r^2 = 0.13" [1] "LS O2 vs. SLOPE: m = -1.74, r^2 = 0.92" [1] "HS CO2 vs. Time: m = 18.897, r^2 = 0.9" [1] "LS CO2 vs. Time: m = 19.654, r^2 = 0.9" [1] "HS CO2 vs. Cylinder T: m = -0.288, r^2 = 0.02" [1] "LS CO2 vs. Cylinder T: m = -0.327, r^2 = 0.022" [1] "HS CO2 vs. Regulator T: m = -0.173, r^2 = 0.09" [1] "LS CO2 vs. Regulator T: m = -0.24, r^2 = 0.154" [1] "HS CO2 vs. Ref. Volumes T: m = -0.149, r^2 = 0.1" [1] "LS CO2 vs. Ref. Volumes T: m = -0.163, r^2 = 0.111" [1] "HS CO2 vs. Manifold T: m = -0.199, r^2 = 0.32" [1] "LS CO2 vs. Manifold T: m = -0.211, r^2 = 0.333" [1] "HS CO2 vs. Pump Box T: m = -0.016, r^2 = 0.01" [1] "LS CO2 vs. Pump Box T: m = -0.025, r^2 = 0.019" [1] "HS O2 vs. Cylinder T: m = -7.49, r^2 = 0.04" [1] "LS O2 vs. Cylinder T: m = -18.825, r^2 = 0.007" [1] "HS O2 vs. Regulator T: m = 1.134, r^2 = 0.01" [1] "LS O2 vs. Regulator T: m = -8.139, r^2 = 0.017" [1] "HS O2 vs. Ref. Volumes T: m = -0.233, r^2 = 0" [1] "LS O2 vs. Ref. Volumes T: m = -9.621, r^2 = 0.036" [1] "HS O2 vs. Manifold T: m = 1.42, r^2 = 0.05" [1] "LS O2 vs. Manifold T: m = -10.204, r^2 = 0.074" [1] "HS O2 vs. Pump Box T: m = 0.37, r^2 = 0.01" [1] "LS O2 vs. Pump Box T: m = -1.858, r^2 = 0.01" [1] "HS CO2 vs. WT P: m = 0.001, r^2 = 0.03" [1] "LS CO2 vs. WT P: m = 0.001, r^2 = 0.017" [1] "HS CO2 vs. SP P: m = 0.000963, r^2 = 0.04" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.148, r^2 = 0.34" [1] "HS CO2 vs. SP P comb with PACAB: m = -0.146, r^2 = 0.34" [1] "LS CO2 vs. SP P: m = 2.46e-05, r^2 = 0" [1] "LS CO2 vs. PACAB comb with SP P: m = 0.048, r^2 = 0.26" [1] "LS CO2 vs. SP P comb with PACAB: m = -0.044, r^2 = 0.26" [1] "HS CO2 vs. WT FL: m = -0.113, r^2 = 0.29" [1] "LS CO2 vs. WT FL: m = -0.129, r^2 = 0.371" [1] "HS CO2 vs. SP FL: m = -0.042, r^2 = 0.14" [1] "LS CO2 vs. SP FL: m = -0.037, r^2 = 0.111" [1] "HS O2 vs. SLPDIFF: m = -0.081, r^2 = 0" [1] "LS O2 vs. SLPDIFF: m = 1.48, r^2 = 0.015" [1] "HS O2 vs. WT P: m = 0.003, r^2 = 0" [1] "LS O2 vs. WT P: m = 0.041, r^2 = 0.006" [1] "HS O2 vs. SP P: m = 0.001, r^2 = 0" [1] "LS O2 vs. SP P: m = 0.024, r^2 = 0.002" [1] "HS O2 vs. WT FL: m = 0.836, r^2 = 0.05" [1] "LS O2 vs. WT FL: m = -2.58, r^2 = 0.014" [1] "HS O2 vs. SP FL: m = 0.169, r^2 = 0.01" [1] "LS O2 vs. SP FL: m = -1.063, r^2 = 0.009" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): 51.91, 50.13" [1] "Empirical LP O2 lag flow(s): 106.3, 102.6" [1] "Empirical LP CO2 lag time(s): 37.31, 40.8" [1] "Empirical LP CO2 lag flow(s): 106.3, 102.6" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.41" [1] "Median all HS CO2 SD = 0.41" [1] "Median all LS CO2 SD = 0.4" [1] "Median all LT CO2 SD = 0.47" [1] "Median all WT CO2 SD = 0.4" [1] "Median all HS or LS CO2 SD = 0.41" [1] "Median all cal O2 SD = 1.87" [1] "Median all HS O2 SD = 1.59" [1] "Median all LS O2 SD = 2.23" [1] "Median all LT O2 SD = 1.8" [1] "Median all WT O2 SD = 1.52" [1] "Median all HS or LS O2 SD = 1.7" [1] "Median all cal CO2 Slope = 0.03" [1] "Median all HS CO2 Slope = 0.02" [1] "Median all LS CO2 Slope = 0.08" [1] "Median all LT CO2 Slope = -0.08" [1] "Median all WT CO2 Slope = -0.08" [1] "Median all HS or LS CO2 Slope = 0.05" [1] "Median all cal O2 Slope = 0.38" [1] "Median all HS O2 Slope = 0.39" [1] "Median all LS O2 Slope = 2.28" [1] "Median all LT O2 Slope = -0.47" [1] "Median all WT O2 Slope = -0.75" [1] "Median all HS or LS O2 Slope = 1.13" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 7.7 per meg" [1] "Initial O2 Calibration Offset = 0.64 per meg" [1] "SD of O2 Calibration (post-takeoff) = 2.52 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = -1.2 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = -15.9 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using ATom2 inlet volumes" [1] "before any lag: 53529.55 88695.48" [1] "Time lag adjustments = 7 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 49.5 at 106.2 sccm" [1] "Median O2 delay + tlagff = 50.2 at 106.2 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 48.4 at 106.2 sccm" [1] "Median O2 delay from 3-way + tlagff = 49.1 at 106.2 sccm" [1] "after calc and ff lag: 53476.08 88644.46" [1] "2025-05-13 16:50:40 MDT" [1] "Calculating 1-sec interpolated values" [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Outputting data files" [1] "Not reporting 1399 O2 values from manual exclude period 103.82765 to 103.865726" [1] "Not reporting 1399 APO values from manual exclude period 103.82765 to 103.865726" [1] "Not reporting 54 O2 values from manual exclude period 103.880615 to 103.882079" [1] "Not reporting 54 APO values from manual exclude period 103.880615 to 103.882079" [1] "Not reporting 3297 smoothed O2 values from manual exclude period 103.827017116415 to 103.865177923646" [1] "Not reporting 3297 smoothed APO values from manual exclude period 103.827017116415 to 103.865177923646" [1] "Not reporting 127 smoothed O2 values from manual exclude period 103.87997738976 to 103.881456321725" [1] "Not reporting 127 smoothed APO values from manual exclude period 103.87997738976 to 103.881456321725" [1] "Not reporting 3297 smoothed O2 values from manual exclude period 103.827017116415 to 103.865177923646" [1] "Not reporting 3297 smoothed APO values from manual exclude period 103.827017116415 to 103.865177923646" [1] "Not reporting 127 smoothed O2 values from manual exclude period 103.87997738976 to 103.881456321725" [1] "Not reporting 127 smoothed APO values from manual exclude period 103.87997738976 to 103.881456321725" [1] "Plotting intervals" [1] "making html" [1] "making index html"