[1] "2025-05-13 16:42:03 MDT" options [1,] "file" "171027a" [2,] "flight" "RF13" [3,] "project" "ATOM3" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "17" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "full" [48,] "o2caltype" "full" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "TRUE" [64,] "icartt" "lookup" [65,] "icarttrev" "1" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "171027a" [1] "Reading in flight and plotting intervals" Read 22 records [1] "Reading in /scr/raf/stephens/AO2DAT/171027a.mr" Read 14219 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.33 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.36 seconds" [1] "New JOGEST = 2.36 seconds" [1] "New VALVE SKIP = 25 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/171027a.hr" Read 56877 records [1] "HR FILE MATCHES" [1] "Converting hrdata statout" [1] "Tue May 13 04:42:04 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30767 description: HS CO2 = 378.73 O2 = -552.4" [1] "position 2 cylinder OK30768 description: LS CO2 = 408.78 O2 = -697.9" [1] "position 3 cylinder OK30772 description: LT CO2 = 393.41 O2 = -583.6" [1] "position 4 cylinder OK30770 description: WT CO2 = 398.49 O2 = -708.3" [1] "position 5 cylinder OK30771 description: LP CO2 = 391.32 O2 = -449.6" [1] 378.7303 408.7762 393.4134 398.4931 391.3193 [1] -552.3831 -697.8583 -583.5967 -708.2594 -449.6435 [1] "Nominal linear calibrations:" [1] "co2scl = 1.071 co2off = 4.25 o2scla = -0.055 o2offa = -122.1" [1] "(dV/V)/(dXO2/XO2) = -3.83" [1] "(dV/V)/d(O2/N2) = -3.028" [1] "Reading in very high resolution timeseries" Read 284380 records [1] 284380 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 04:42:04 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 04:42:06 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.028" [1] "o2scaleavenew_drelVdrelP = -3.83" [1] "median(o2scalenew) = -3.027" [1] "Empirical dV/V vs dP/P relationship =-4.123, r^2 =0.388, damping =1.077" [1] "Tue May 13 04:42:06 PM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "Plotting Jog Shapes" [1] "Tue May 13 04:42:45 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 19482971.591232 SECONDS" [1] "Tue May 13 04:42:45 PM MDT 2025 done recreating mr o2diffs" [1] "Removed 1 medium-rate record(s) with accumulation errors" [1] "Screening 1 LiH2O values less than -10" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) -123.562 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) -108.701 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) -107.18 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 43.113 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 6 [1] 30 [1] 81 [1] 81 [1] 81 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 1 300.6632 -171.581549 1026026.0 1 [2,] 2 300.6632 -773.866148 1025533.1 -1 [3,] 3 300.6633 -878.770583 1026448.2 1 [4,] 4 300.6633 -657.219154 1025834.8 -1 [5,] 5 300.6633 -286.377641 1026422.3 1 [6,] 6 300.6634 -24.295875 1026387.4 -1 [7,] 70 300.6651 -492.067058 1025835.3 -1 [8,] 132 300.6668 -219.623532 1026337.2 -1 [9,] 196 300.6685 -371.668835 1026587.8 -1 [10,] 258 300.6702 -722.563772 1026394.2 -1 [11,] 388 300.6737 -802.885329 1025993.8 -1 [12,] 389 300.6738 -465.849166 1026796.9 1 [13,] 390 300.6738 -115.400692 1026693.4 -1 [14,] 454 300.6756 -500.849040 1026834.8 -1 [15,] 518 300.6773 -848.351348 1027773.9 -1 [16,] 770 300.6842 -680.005837 1033959.1 -1 [17,] 832 300.6859 -517.441086 1035506.3 -1 [18,] 833 300.6859 -293.088554 1036049.9 1 [19,] 834 300.6859 -71.874596 1036008.0 -1 [20,] 958 300.6893 -127.177437 1037717.0 -1 [21,] 959 300.6893 -626.064122 1037885.4 1 [22,] 960 300.6893 -1006.604552 1036866.4 -1 [23,] 962 300.6894 -575.308520 1037333.7 -1 [24,] 968 300.6896 -906.637414 1037038.3 -1 [25,] 1150 300.6945 -849.776728 1038086.9 -1 [26,] 1151 300.6945 -626.200745 1038961.2 1 [27,] 1152 300.6946 -354.161892 1038631.0 -1 [28,] 1154 300.6946 -64.651036 1038910.6 -1 [29,] 1216 300.6963 -477.430704 1038339.0 -1 [30,] 1342 300.6998 -819.873703 1037202.4 -1 [31,] 1534 300.7050 -575.412842 1036780.6 -1 [32,] 1596 300.7067 -220.051086 1037299.4 -1 [33,] 1720 300.7101 18.809055 1037109.5 -1 [34,] 1721 300.7101 -236.076045 1037085.7 1 [35,] 1722 300.7101 -545.883130 1036504.2 -1 [36,] 1724 300.7102 -827.737810 1036238.1 -1 [37,] 1914 300.7154 -824.963838 1035367.1 -1 [38,] 1915 300.7154 -473.787806 1036205.9 1 [39,] 1916 300.7154 -109.968974 1036101.5 -1 [40,] 1978 300.7171 -354.362625 1035482.5 -1 [41,] 2042 300.7189 -817.087991 1034639.5 -1 [42,] 3486 300.7584 -565.920137 1011388.5 -1 [43,] 3550 300.7602 -48.215233 1010522.1 -1 [44,] 3614 300.7619 -350.559511 1008911.8 -1 [45,] 3678 300.7637 -28.360084 1008077.4 -1 [46,] 4346 300.7819 -248.015781 1002888.2 -1 [47,] 4352 300.7821 -20.327408 1003134.0 -1 [48,] 4414 300.7838 -443.182502 1002864.9 -1 [49,] 5844 300.8229 -228.135777 1007586.3 -1 [50,] 5914 300.8248 -423.390105 1007347.9 -1 [51,] 5978 300.8266 -122.960795 1007807.5 -1 [52,] 7404 300.8656 -215.013619 999618.3 -1 [53,] 7474 300.8675 -18.109026 1000298.1 -1 [54,] 7536 300.8692 -285.285196 1000075.8 -1 [55,] 7866 300.8782 -233.807991 996551.1 -1 [56,] 7934 300.8801 -387.407667 995123.3 -1 [57,] 7998 300.8818 -34.944012 994166.4 -1 [58,] 9122 300.9126 -234.353041 989190.2 -1 [59,] 9128 300.9127 -9.242495 989460.6 -1 [60,] 9190 300.9144 -396.995498 989542.3 -1 [61,] 10328 300.9455 -210.677565 987903.5 -1 [62,] 10334 300.9457 -495.936677 987683.7 -1 [63,] 10398 300.9475 -25.953973 988831.7 -1 [64,] 11150 300.9680 -216.481335 994523.5 -1 [65,] 11156 300.9682 -504.209863 994302.1 -1 [66,] 11218 300.9699 -112.593189 995180.3 -1 [67,] 11282 300.9716 -351.440778 995179.5 -1 [68,] 11344 300.9733 -59.221860 995486.7 -1 [69,] 12630 301.0085 -183.650037 996476.1 -1 [70,] 12700 301.0104 -426.046539 995726.7 -1 [71,] 13669 301.0369 -147.682803 980909.8 1 [72,] 13670 301.0369 -199.714798 980853.1 -1 [73,] 13671 301.0370 -183.919343 981199.3 1 [74,] 13688 301.0374 -170.760357 981493.9 -1 [75,] 13708 301.0380 -655.535472 981512.4 -1 [76,] 13966 301.0450 -640.242051 991104.7 -1 [77,] 14028 301.0467 -502.082348 993704.4 -1 [78,] 14029 301.0467 -305.416610 994240.5 1 [79,] 14030 301.0468 -96.099075 994211.4 -1 [80,] 14094 301.0485 -246.083832 996476.4 -1 [81,] 14158 301.0502 -67.410614 998912.5 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 361 300.673 9253.536 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) -123.562 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 33.069 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 33.184 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 43.113 PER MEG" [1] 378.7303 408.7762 393.4134 398.4931 391.3193 [1] -552.3831 -697.8583 -583.5967 -708.2594 -449.6435 [1] "Nominal linear calibrations:" [1] "co2scl = 1.071 co2off = 4.25 o2scla = -0.054 o2offa = -122.4" [1] "(dV/V)/(dXO2/XO2) = -3.846" [1] "(dV/V)/d(O2/N2) = -3.041" [1] "Finding cal and sample periods" [1] "Median Cal: 2.44 minutes" [1] "Average Cal: 2.37 minutes" [1] "Shortest Cal: 0.08 minutes" [1] "Longest Cal: 5 minutes" [1] "Removed 3 calibration period(s) with less than 30 seconds of data" [1] "at: 6" [1] "at: 67" [1] "at: 72" [1] "Reading in aircraft data" [1] "Reading /scr/raf/stephens/HUMERGE/ATOM3/MMS/MMS-1HZ_DC8_20171027_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 17 items Read 17 items Read 1 item Read 1 item Read 18 items Read 419796 items [1] "Reading /scr/raf/stephens/HUMERGE/ATOM3/MMS/MMS-20Hz_DC8_20171027_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 25 items Read 25 items Read 1 item Read 1 item Read 26 items Read 12144496 items [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.00121" [1] "HS CO2 vs. PACAB: m = -0.000591, r^2 = 0.05" [1] "LS CO2 vs. PACAB: m = -0.00183, r^2 = 0.55" [1] "HS+LS LIH2O vs. PACAB: m = -2.32e-05" [1] "HS LIH2O vs. PACAB: m = -5.08e-05, r^2 = 0.43" [1] "LS LIH2O vs. PACAB: m = 4.26e-06, r^2 = 0.01" [1] "HS+LS CO2 vs. LIH2O: m = 9.62" [1] "HS CO2 vs. LIH2O: m = 14, r^2 = 0.17" [1] "LS CO2 vs. LIH2O: m = 5.27, r^2 = 0.01" [1] "APCO2 vs. PACAB: m = 0.00722, r^2 = 0.1" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = -0.0737" [1] "HS O2 vs. PACAB: m = -0.0686, r^2 = 0.72" [1] "LS O2 vs. PACAB: m = -0.0789, r^2 = 0.43" [1] "HS+LS O2 vs. LIH2O: m = 102" [1] "HS O2 vs. LIH2O: m = 801, r^2 = 0.63" [1] "LS O2 vs. LIH2O: m = -597, r^2 = 0.13" [1] "HS+LS O2 vs. PAO2: m = -2.24" [1] "HS O2 vs. PAO2: m = -2.21, r^2 = 0.01" [1] "LS O2 vs. PAO2: m = -2.27, r^2 = 0.01" [1] "HS+LS O2 vs. TPBOX: m = -2.96" [1] "HS O2 vs. TPBOX: m = -2.24, r^2 = 0.35" [1] "LS O2 vs. TPBOX: m = -3.68, r^2 = 0.33" [1] "APO vs. PACAB: m = -0.124, r^2 = 0.1" [1] "APO vs. PAO2: m = -16.6, r^2 = 0.11" [1] "APO vs. TPBOX: m = 1.94, r^2 = 0.01" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 0.0452, r^2 = 0" [1] "LS CO2 vs. LiCor Cell P: m = -0.0357, r^2 = 0" [1] "HS CO2 vs. CO2 Vol P: m = 0.488, r^2 = 0.27" [1] "LS CO2 vs. CO2 Vol P: m = 0.357, r^2 = 0.25" [1] "HS CO2 vs. SLOPE: m = 0.1, r^2 = 0.01" [1] "LS CO2 vs. SLOPE: m = 0.0907, r^2 = 0.02" [1] "HS O2 vs. O2 Vol P: m = -2.43, r^2 = 0.02" [1] "LS O2 vs. O2 Vol P: m = -3.92, r^2 = 0.02" [1] "HS O2 vs. O2 Cell T: m = 2.23, r^2 = 0.07" [1] "LS O2 vs. O2 Cell T: m = 6.08, r^2 = 0.17" [1] "HS O2 vs. CO2 Vol P: m = 5.52, r^2 = 0.07" [1] "LS O2 vs. CO2 Vol P: m = 12.5, r^2 = 0.16" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = 7.68, r^2 = 0.07" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = 0.826, r^2 = 0" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = 5.52, r^2 = 0.07" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = 12.5, r^2 = 0.16" [1] "HS O2 vs. LIH2O: m = 587, r^2 = 0.4" [1] "LS O2 vs. LIH2O: m = -88.5, r^2 = 0" [1] "HS O2 vs. SLOPE: m = -0.391, r^2 = 0.04" [1] "LS O2 vs. SLOPE: m = -1.22, r^2 = 0.75" [1] "HS CO2 vs. Time: m = 14.847, r^2 = 0.95" [1] "LS CO2 vs. Time: m = 14.982, r^2 = 0.95" [1] "HS CO2 vs. Cylinder T: m = 0.126, r^2 = 0" [1] "LS CO2 vs. Cylinder T: m = 0.864, r^2 = 0.1" [1] "HS CO2 vs. Regulator T: m = -0.081, r^2 = 0.03" [1] "LS CO2 vs. Regulator T: m = 0.022, r^2 = 0.003" [1] "HS CO2 vs. Ref. Volumes T: m = -0.037, r^2 = 0" [1] "LS CO2 vs. Ref. Volumes T: m = 0.082, r^2 = 0.027" [1] "HS CO2 vs. Manifold T: m = -0.125, r^2 = 0.18" [1] "LS CO2 vs. Manifold T: m = -0.115, r^2 = 0.197" [1] "HS CO2 vs. Pump Box T: m = -0.054, r^2 = 0.1" [1] "LS CO2 vs. Pump Box T: m = -0.079, r^2 = 0.284" [1] "HS O2 vs. Cylinder T: m = 35.835, r^2 = 0.21" [1] "LS O2 vs. Cylinder T: m = 81.863, r^2 = 0.484" [1] "HS O2 vs. Regulator T: m = 3.283, r^2 = 0.1" [1] "LS O2 vs. Regulator T: m = 11.175, r^2 = 0.452" [1] "HS O2 vs. Ref. Volumes T: m = 6.407, r^2 = 0.24" [1] "LS O2 vs. Ref. Volumes T: m = 16.439, r^2 = 0.586" [1] "HS O2 vs. Manifold T: m = -1.55, r^2 = 0.06" [1] "LS O2 vs. Manifold T: m = -3.218, r^2 = 0.084" [1] "HS O2 vs. Pump Box T: m = -1.989, r^2 = 0.27" [1] "LS O2 vs. Pump Box T: m = -3.811, r^2 = 0.36" [1] "HS CO2 vs. WT P: m = -0.001, r^2 = 0.03" [1] "LS CO2 vs. WT P: m = -0.002, r^2 = 0.381" [1] "HS CO2 vs. SP P: m = -0.000523, r^2 = 0.04" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.11, r^2 = 0.21" [1] "HS CO2 vs. SP P comb with PACAB: m = -0.11, r^2 = 0.21" [1] "LS CO2 vs. SP P: m = -0.00156, r^2 = 0.41" [1] "LS CO2 vs. PACAB comb with SP P: m = 0.047, r^2 = 0.53" [1] "LS CO2 vs. SP P comb with PACAB: m = -0.049, r^2 = 0.53" [1] "HS CO2 vs. WT FL: m = 0.011, r^2 = 0" [1] "LS CO2 vs. WT FL: m = 0.04, r^2 = 0.039" [1] "HS CO2 vs. SP FL: m = 0.015, r^2 = 0.03" [1] "LS CO2 vs. SP FL: m = 0.039, r^2 = 0.396" [1] "HS O2 vs. SLPDIFF: m = -0.161, r^2 = 0.01" [1] "LS O2 vs. SLPDIFF: m = -0.529, r^2 = 0.024" [1] "HS O2 vs. WT P: m = -0.054, r^2 = 0.49" [1] "LS O2 vs. WT P: m = -0.076, r^2 = 0.464" [1] "HS O2 vs. SP P: m = -0.056, r^2 = 0.5" [1] "LS O2 vs. SP P: m = -0.078, r^2 = 0.472" [1] "HS O2 vs. WT FL: m = 2.471, r^2 = 0.2" [1] "LS O2 vs. WT FL: m = 7.122, r^2 = 0.674" [1] "HS O2 vs. SP FL: m = 1.412, r^2 = 0.64" [1] "LS O2 vs. SP FL: m = 2.265, r^2 = 0.73" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): 18.71, 51.15" [1] "Empirical LP O2 lag flow(s): 100, 102.5" [1] "Empirical LP CO2 lag time(s): 14.04, 44.15" [1] "Empirical LP CO2 lag flow(s): 100, 102.5" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.41" [1] "Median all HS CO2 SD = 0.41" [1] "Median all LS CO2 SD = 0.4" [1] "Median all LT CO2 SD = 0.42" [1] "Median all WT CO2 SD = 0.39" [1] "Median all HS or LS CO2 SD = 0.41" [1] "Median all cal O2 SD = 1.83" [1] "Median all HS O2 SD = 1.51" [1] "Median all LS O2 SD = 1.49" [1] "Median all LT O2 SD = 1.28" [1] "Median all WT O2 SD = 1.42" [1] "Median all HS or LS O2 SD = 1.49" [1] "Median all cal CO2 Slope = 0.03" [1] "Median all HS CO2 Slope = 0.07" [1] "Median all LS CO2 Slope = -0.02" [1] "Median all LT CO2 Slope = 0.06" [1] "Median all WT CO2 Slope = 0.12" [1] "Median all HS or LS CO2 Slope = 0.01" [1] "Median all cal O2 Slope = -0.26" [1] "Median all HS O2 Slope = -0.74" [1] "Median all LS O2 Slope = -0.65" [1] "Median all LT O2 Slope = -0.45" [1] "Median all WT O2 Slope = -0.71" [1] "Median all HS or LS O2 Slope = -0.74" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 5.33 per meg" [1] "Initial O2 Calibration Offset = 11.04 per meg" [1] "SD of O2 Calibration (post-takeoff) = 2.69 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = 12.38 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = 3.87 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using ATom2 inlet volumes" [1] "before any lag: 57302.12 90882.52" [1] "Time lag adjustments = 17 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 63.2 at 101.9 sccm" [1] "Median O2 delay + tlagff = 64 at 101.9 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 60.2 at 101.9 sccm" [1] "Median O2 delay from 3-way + tlagff = 60.9 at 101.9 sccm" [1] "after calc and ff lag: 57235.94 90820.38" [1] "2025-05-13 16:43:33 MDT" [1] "Calculating 1-sec interpolated values" [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] 0.26606606 0.26606606 -2.57840882 -3.26992163 -2.02391982 [6] -0.91078889 0.56966774 0.86763670 1.06168784 1.98165491 [11] 2.85829736 7.88764292 5.16069926 5.00940572 5.00940572 [16] 5.20766686 1.96051668 -1.22728525 -1.26121527 -10.16880125 [21] -10.16880125 -10.16880125 -9.95627008 -0.94637682 1.95550455 [26] 3.12929022 4.04487126 3.55384209 -4.18400738 -4.18400738 [31] -4.18400738 -4.18400738 -1.79439232 -1.88196501 -1.88196501 [36] -1.88196501 22.11771262 22.11771262 22.11771262 17.67761670 [41] -6.81002216 -6.81002216 -8.48139004 -11.62156759 -14.46769807 [46] -14.46769807 -12.78371326 -12.39745098 -7.45317463 -3.30362613 [51] -0.71410941 -0.71410941 -0.71410941 -5.84507821 -7.56460407 [56] -8.39027996 -8.39027996 -11.85713231 -14.96846563 -19.11659100 [61] -19.11659100 -12.20951705 -12.20951705 -12.20951705 -10.23938554 [66] -10.51771999 -10.17385064 -10.17385064 -10.17385064 -7.55983472 [71] -5.84502810 -6.74563494 -7.03796134 -6.13831525 -3.27579519 [76] -3.27579519 -3.27579519 -3.16467444 -14.12862616 -14.04763730 [81] -14.04763730 -14.04763730 -7.22896690 -5.58628618 -2.18406333 [86] -2.18406333 -1.72130107 -1.72130107 -2.80596090 -5.34079291 [91] -6.09845373 -6.09845373 -6.31964995 -7.91134658 -12.71832486 [96] -16.42707390 -16.06833211 -14.42146761 -11.95503577 -4.65336867 [101] -4.65336867 -4.85034082 -6.29087680 -14.45552830 -14.45552830 [106] -14.45552830 -14.96535394 -10.11489054 -10.11489054 -10.11489054 [111] -10.47650733 -11.93021925 -11.93021925 -11.93021925 -10.86175764 [116] -1.97758463 4.85189630 4.85189630 4.85189630 3.96499807 [121] 0.80885461 -1.73240447 -3.79482938 -3.79482938 -6.11267232 [126] -6.11267232 -6.11267232 -6.11267232 -0.44699177 -0.44699177 [131] 0.26565562 2.15542511 -0.09386157 2.17588030 2.19363337 [136] 2.19363337 1.37378957 0.99621474 0.99621474 0.99621474 [141] 1.63747051 3.23818900 1.76476789 0.40302960 -0.10483812 [146] 2.39122990 2.36370461 2.36370461 2.36370461 -3.63774969 [151] -3.63774969 -3.74103461 -4.15497538 0.80175257 -0.46322091 [156] -2.01352178 -2.29210180 -2.08408607 -1.77965334 -1.77965334 [161] -3.09565390 -2.70894634 -1.69735152 -1.69735152 -1.69735152 [166] -2.75996949 -13.68492480 -13.68492480 -13.68492480 -13.68492480 [171] -9.48851445 -7.77838528 -7.55069175 -7.47918010 -5.60403754 [176] -5.60403754 -6.54914305 -8.58197181 -12.71741588 -14.01802941 [181] -14.01802941 -14.01802941 -14.01802941 -16.42614553 -17.03739879 [186] -17.03739879 -16.67956498 -13.01377976 -13.01377976 -12.93905844 [191] -12.71666948 -5.03980531 -5.03980531 -5.03980531 -5.03980531 [196] -11.93076081 -11.66010918 -11.28937525 -11.22272956 -10.85483822 [201] -10.65331055 -10.67741557 -10.88009151 -11.81319757 -14.94508599 [206] -14.94508599 -14.94508599 -14.90709864 -20.64976338 -20.64976338 [211] -20.64976338 -20.64976338 -12.31943028 -15.50014398 -17.38294375 [216] -17.38294375 -17.92308222 -17.92308222 -16.49191090 -13.68465865 [221] -15.10518990 -15.28498313 -15.28498313 -15.48777367 -11.98823753 [226] -11.04049388 -12.66532928 -12.66532928 -12.66532928 -19.62349453 [231] -17.00440677 -15.44534282 -15.44534282 -18.36737297 -18.36737297 [236] -18.83013330 -19.34776813 -7.09578682 -7.09578682 -7.09578682 [241] -7.09578682 -15.20916553 -17.55273322 -17.72972363 -17.79051792 [246] -15.98794131 -11.29934960 -11.29934960 -11.15390994 -11.05986766 [251] -14.65029884 -14.06991425 -13.13607329 -12.03070583 -11.13466914 [256] -11.13466914 -11.13466914 -11.13466914 -15.44151409 -16.63545665 [261] -16.65045839 -16.90356162 -12.68835844 -8.56686486 -8.56686486 [266] -8.56686486 -7.98925513 -4.75581539 -4.75581539 -5.08756789 [271] -7.31488416 -7.04553008 -7.42374373 -7.61127544 -7.61127544 [276] -14.33552747 -14.25543625 -13.90347293 -12.63793241 -1.57549673 [281] 5.55201823 5.55201823 5.55201823 5.55201823 3.37226289 [286] 3.37226289 1.25762326 -1.39074501 -9.90844193 -9.90844193 [291] -9.90844193 -9.90844193 -6.20935465 -6.20935465 -7.90276276 [296] -9.13228206 -5.34353432 -5.34353432 -5.34353432 -2.27101636 [301] -0.50644003 -1.63798709 -1.63798709 -1.63798709 -2.23610400 [306] 0.74478025 0.74478025 0.74478025 0.74478025 -4.73538262 [311] -7.71548471 -9.11513192 -9.11513192 -9.61884381 -9.61884381 [316] -9.61884381 -9.00843734 -5.07459381 -1.94980482 -0.37654768 [321] 0.06225155 0.33676109 0.66141309 0.66141309 0.66141309 [326] -0.99352977 -5.72109562 -5.79510387 -5.79510387 -5.79510387 [331] -4.37182374 -4.37182374 -4.65247989 -7.52999278 -16.50183668 [336] -16.56802849 -16.56802849 -16.56802849 -10.35831534 -9.78617714 [341] -8.36947086 -5.72676007 -2.22789163 1.41490025 1.41490025 [346] 1.41490025 1.41490025 -5.00346301 -4.44292853 -3.72525280 [351] -2.89859224 -2.36359737 -2.36359737 -2.36359737 -2.36359737 [356] -6.52637566 -6.74091884 -8.43361258 -10.04190892 -9.84739129 [361] -8.69227947 -8.69227947 -8.69227947 -8.55734904 -7.75501574 [366] -5.39540416 -3.03469828 -3.03469828 6.54913761 6.54913761 [371] 6.54913761 6.54913761 -1.09034432 -2.36813584 -2.89489698 [376] -3.41790156 -9.18872441 -10.56849740 -10.56849740 -10.56849740 [381] -9.30533253 -6.21151392 -5.43278680 -4.64196324 -4.20377460 [386] -7.24328947 -7.13174778 -7.13174778 -7.13174778 2.18505677 [391] 2.18505677 2.18505677 2.42711603 -0.69497046 -0.57255168 [396] -0.57255168 -0.57255168 0.32900461 1.37608799 1.37608799 [401] 1.37608799 1.55051100 -5.43727663 -4.80029676 -4.58522036 [406] -4.58522036 [1] 64.79879 65.36316 66.09435 66.97916 68.50151 70.50629 74.14094 [8] 77.68045 81.39470 84.72606 88.81265 92.31055 95.39593 98.59678 [15] 101.21008 103.44380 106.07208 108.72791 110.21497 111.69466 113.15647 [22] 114.62471 116.04832 117.45018 118.98976 120.17033 121.29091 122.41626 [29] 123.69575 124.80949 126.46055 128.56723 131.10073 134.02122 137.23591 [36] 140.62631 144.04963 146.98627 150.77054 153.91716 157.18349 160.86981 [43] 164.28305 167.99402 171.70551 174.92395 178.17156 181.37406 184.89110 [50] 187.17678 189.38860 192.01993 194.44393 197.09800 200.48602 203.14783 [57] 205.93994 208.72963 211.05342 213.36505 215.20541 216.75513 218.26127 [64] 219.95392 221.52078 222.92180 224.47425 226.04462 227.59789 228.98251 [71] 230.62136 232.24084 233.84820 235.34543 236.84485 238.41552 240.31242 [78] 242.09944 244.06435 245.88510 247.66309 249.48148 251.60842 253.26063 [85] 255.04618 256.93557 258.77726 260.56244 262.68810 264.92270 267.22841 [92] 269.31722 271.94538 274.02711 276.69755 278.99865 281.35636 283.51073 [99] 285.92131 287.99182 289.93188 292.23433 294.36376 296.63009 298.81821 [106] 300.82231 303.18533 305.23395 307.94357 309.90349 312.10564 314.24137 [113] 316.34484 318.46489 320.53903 322.59885 324.37408 326.39279 328.38191 [120] 329.94485 331.28057 332.45521 333.50413 334.56023 335.63264 336.49165 [127] 337.46373 338.21045 338.89020 339.51223 340.13222 340.67306 341.32983 [134] 342.14301 342.89793 343.50851 344.22964 345.01225 345.98123 346.88774 [141] 347.90376 348.91133 349.91329 350.83929 351.87292 352.70600 353.56997 [148] 354.52927 355.17872 356.13262 356.99132 357.97151 358.89447 359.87104 [155] 360.93544 361.96883 363.53402 364.98761 366.89157 368.45355 370.07409 [162] 371.70631 373.32683 374.95211 376.53298 378.11043 379.71816 381.27184 [169] 382.79878 384.24843 385.74063 387.24584 388.86454 390.43951 392.07122 [176] 393.55626 395.08126 396.50340 397.92494 399.19117 400.38640 401.86258 [183] 403.12447 404.47699 406.10408 407.36770 408.73980 409.76105 411.24620 [190] 412.52507 413.90688 415.12898 416.53192 417.81090 419.23833 420.48277 [197] 422.08973 423.64100 425.31535 426.97580 428.66019 430.12761 431.71552 [204] 433.12309 434.54301 435.83272 437.30382 438.67767 440.04112 441.73801 [211] 443.10036 444.17756 445.70998 446.99358 448.45987 449.80641 451.12891 [218] 452.41281 453.98055 455.29537 456.72794 458.14089 459.39300 460.93186 [225] 462.35489 463.65187 465.04882 466.36338 467.89242 469.37543 470.69777 [232] 472.06097 473.40168 474.60625 475.89694 477.38426 478.65842 479.96939 [239] 481.29535 482.46091 483.85502 485.17921 486.28044 487.29816 488.08230 [246] 488.93607 490.12938 491.08113 492.32241 492.96772 493.39681 493.70440 [253] 494.19932 494.78514 495.35585 496.11829 496.90240 497.59262 498.49186 [260] 499.31462 500.26169 501.02476 501.69084 502.41424 503.23925 503.94406 [267] 504.76092 505.57965 506.38414 507.26149 508.16058 508.92497 510.00895 [274] 510.87365 512.04729 513.00935 514.07876 515.02815 515.89039 516.90188 [281] 517.80462 518.58850 519.65424 520.53247 521.49807 522.37935 523.57215 [288] 524.64435 525.63520 526.59983 527.31789 528.14228 529.01542 529.67300 [295] 530.48952 531.33647 532.22699 533.23837 534.19671 535.16434 536.20409 [302] 537.17002 538.11218 538.88459 539.90584 540.98810 541.82879 542.69662 [309] 543.48098 544.25037 544.98097 545.83918 546.64281 547.41015 548.25801 [316] 548.89946 549.85784 550.64053 551.54988 552.34560 553.15216 554.05035 [323] 554.92678 555.71927 556.49279 557.24019 558.21731 559.02378 559.81064 [330] 560.59215 561.39381 562.16808 562.95516 563.73574 564.49646 565.29700 [337] 566.26200 566.99792 567.76132 568.45046 569.16391 569.80842 570.62111 [344] 571.35086 572.18042 572.82485 573.74270 574.48680 575.21705 576.00376 [351] 576.77924 577.57618 578.40027 579.20910 579.99109 580.80040 581.46608 [358] 582.15102 582.76767 583.55886 584.17104 584.82943 585.72758 586.41463 [365] 587.20403 587.95553 588.70938 589.46986 590.27559 590.95988 591.80635 [372] 592.54516 593.37331 594.12090 594.79999 595.56505 596.23404 596.84662 [379] 597.38561 598.03282 598.59492 599.06547 599.59900 600.14082 600.65440 [386] 601.20829 601.79086 602.46473 603.09669 603.77370 604.40169 605.11188 [393] 605.72073 606.36186 606.99333 607.53324 608.07121 608.60104 609.17294 [400] 609.74970 610.35125 610.92387 611.48221 612.05086 612.59960 613.06417 [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Not reporting 34 O2 values from manual exclude period 300.768936 to 300.769868" [1] "Not reporting 34 APO values from manual exclude period 300.768936 to 300.769868" [1] "Not reporting 34 O2 values from manual exclude period 300.784552 to 300.785484" [1] "Not reporting 34 APO values from manual exclude period 300.784552 to 300.785484" [1] "Not reporting 43 O2 values from manual exclude period 300.827903 to 300.829068" [1] "Not reporting 43 APO values from manual exclude period 300.827903 to 300.829068" [1] "Not reporting 42 O2 values from manual exclude period 300.916005 to 300.91717" [1] "Not reporting 42 APO values from manual exclude period 300.916005 to 300.91717" [1] "Not reporting 42 O2 values from manual exclude period 300.974739 to 300.975904" [1] "Not reporting 42 APO values from manual exclude period 300.974739 to 300.975904" [1] "Not reporting 42 O2 values from manual exclude period 301.011798 to 301.012963" [1] "Not reporting 42 APO values from manual exclude period 301.011798 to 301.012963" [1] "Not reporting 82 smoothed O2 values from manual exclude period 300.768178933665 to 300.769128096" [1] "Not reporting 82 smoothed APO values from manual exclude period 300.768178933665 to 300.769128096" [1] "Not reporting 79 smoothed O2 values from manual exclude period 300.783866200945 to 300.784783513261" [1] "Not reporting 79 smoothed APO values from manual exclude period 300.783866200945 to 300.784783513261" [1] "Not reporting 99 smoothed O2 values from manual exclude period 300.827226636422 to 300.828374398418" [1] "Not reporting 99 smoothed APO values from manual exclude period 300.827226636422 to 300.828374398418" [1] "Not reporting 101 smoothed O2 values from manual exclude period 300.915303746755 to 300.916478387031" [1] "Not reporting 101 smoothed APO values from manual exclude period 300.915303746755 to 300.916478387031" [1] "Not reporting 99 smoothed O2 values from manual exclude period 300.974065189906 to 300.975215618999" [1] "Not reporting 99 smoothed APO values from manual exclude period 300.974065189906 to 300.975215618999" [1] "Not reporting 98 smoothed O2 values from manual exclude period 301.011158326713 to 301.012295974258" [1] "Not reporting 98 smoothed APO values from manual exclude period 301.011158326713 to 301.012295974258" [1] "Not reporting 82 smoothed O2 values from manual exclude period 300.768178933665 to 300.769128096" [1] "Not reporting 82 smoothed APO values from manual exclude period 300.768178933665 to 300.769128096" [1] "Not reporting 79 smoothed O2 values from manual exclude period 300.783866200945 to 300.784783513261" [1] "Not reporting 79 smoothed APO values from manual exclude period 300.783866200945 to 300.784783513261" [1] "Not reporting 99 smoothed O2 values from manual exclude period 300.827226636422 to 300.828374398418" [1] "Not reporting 99 smoothed APO values from manual exclude period 300.827226636422 to 300.828374398418" [1] "Not reporting 101 smoothed O2 values from manual exclude period 300.915303746755 to 300.916478387031" [1] "Not reporting 101 smoothed APO values from manual exclude period 300.915303746755 to 300.916478387031" [1] "Not reporting 99 smoothed O2 values from manual exclude period 300.974065189906 to 300.975215618999" [1] "Not reporting 99 smoothed APO values from manual exclude period 300.974065189906 to 300.975215618999" [1] "Not reporting 98 smoothed O2 values from manual exclude period 301.011158326713 to 301.012295974258" [1] "Not reporting 98 smoothed APO values from manual exclude period 301.011158326713 to 301.012295974258" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1710/AO2_DC8_20171027_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 93288 items [1] 13 2333 23322 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 271 271 271 271 271 271 [1] 52570 52580 52590 52600 52610 52620 [1] "2017-09-28 14:36:10 UTC" "2017-09-28 14:36:20 UTC" [3] "2017-09-28 14:36:30 UTC" "2017-09-28 14:36:40 UTC" [5] "2017-09-28 14:36:50 UTC" "2017-09-28 14:37:00 UTC" [1] NA NA NA NA NA NA [1] 33785 [1] "Average Date / Time for slice RF13 = 2017-10-27 21:29:27.4131274223328" [1] "sum(lsel) = 1813" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -2.903 803.040 [1] -2.903 803.040 [1] 196.960 1002.903 [1] 8.571429e-03 9.999990e+05 [1] "highestmid = 712.055" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM3 RF13 APO_AO2 range = -346.16,-325.33" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1710/AO2_DC8_20171027_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 93288 items [1] 13 2333 23322 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 271 271 271 271 271 271 [1] 52570 52580 52590 52600 52610 52620 [1] "2017-09-28 14:36:10 UTC" "2017-09-28 14:36:20 UTC" [3] "2017-09-28 14:36:30 UTC" "2017-09-28 14:36:40 UTC" [5] "2017-09-28 14:36:50 UTC" "2017-09-28 14:37:00 UTC" [1] NA NA NA NA NA NA [1] 33795 [1] "Average Date / Time for slice RF13 = 2017-10-27 21:29:27.4131274223328" [1] "sum(lsel) = 1813" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -2.903 803.040 [1] -2.903 803.040 [1] 196.960 1002.903 [1] 8.571429e-03 9.999990e+05 [1] "highestmid = 712.055" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM3 RF13 O2_AO2 range = -639.87,-612.86" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1710/AO2_DC8_20171027_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 93288 items [1] 13 2333 23322 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 271 271 271 271 271 271 [1] 52570 52580 52590 52600 52610 52620 [1] "2017-09-28 14:36:10 UTC" "2017-09-28 14:36:20 UTC" [3] "2017-09-28 14:36:30 UTC" "2017-09-28 14:36:40 UTC" [5] "2017-09-28 14:36:50 UTC" "2017-09-28 14:37:00 UTC" [1] NA NA NA NA NA NA [1] 34286 [1] "Average Date / Time for slice RF13 = 2017-10-27 21:29:39.1580097675323" [1] "sum(lsel) = 1829" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -2.903 803.040 [1] -2.903 803.040 [1] 196.960 1002.903 [1] 8.571429e-03 9.999990e+05 [1] "highestmid = 712.055" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM3 RF13 CO2_AO2 range = 403.01,406.49" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 4 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 4 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 4 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 4 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 4 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 4 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 4 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 4 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 4 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 4 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 4 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 4 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 4 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"