[1] "2025-05-13 16:29:05 MDT" options [1,] "file" "171017a" [2,] "flight" "RF08" [3,] "project" "ATOM3" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "17" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "full" [48,] "o2caltype" "full" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "TRUE" [64,] "icartt" "lookup" [65,] "icarttrev" "1" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "171017a" [1] "Reading in flight and plotting intervals" Read 18 records [1] "Reading in /scr/raf/stephens/AO2DAT/171017a.mr" Read 16966 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.33 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.36 seconds" [1] "New JOGEST = 2.36 seconds" [1] "New VALVE SKIP = 25 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/171017a.hr" Read 67864 records [1] "HR FILE MATCHES" [1] "Converting hrdata statout" [1] "Tue May 13 04:29:05 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30767 description: HS CO2 = 378.73 O2 = -552.7" [1] "position 2 cylinder OK30768 description: LS CO2 = 408.77 O2 = -698.1" [1] "position 3 cylinder OK30772 description: LT CO2 = 393.41 O2 = -583.4" [1] "position 4 cylinder OK30770 description: WT CO2 = 398.49 O2 = -707.9" [1] "position 5 cylinder OK30769 description: LP CO2 = 404.96 O2 = -714.4" [1] 378.7285 408.7733 393.4141 398.4859 404.9634 [1] -552.7046 -698.1075 -583.4401 -707.8924 -714.3764 [1] "Nominal linear calibrations:" [1] "co2scl = 1.052 co2off = -0.22 o2scla = -0.055 o2offa = -122.9" [1] "(dV/V)/(dXO2/XO2) = -3.791" [1] "(dV/V)/d(O2/N2) = -2.997" [1] "Reading in very high resolution timeseries" Read 339320 records [1] 339320 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 04:29:06 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 04:29:08 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -2.997" [1] "o2scaleavenew_drelVdrelP = -3.791" [1] "median(o2scalenew) = -2.993" [1] "Empirical dV/V vs dP/P relationship =-4.253, r^2 =0.596, damping =1.122" [1] "Tue May 13 04:29:08 PM MDT 2025 done redoing corrections" [1] "NON-INTEGER NGAS IN JOGAVES AT:" [1] 16346 $icochar [1] "0" "0" "19:26:01" "09:55:38" "290.730691" [6] "290.809156" "290.414417" "290.457874" "290.490065" "290.519037" [11] "290.538351" "290.568128" "290.586637" "290.643373" "290.663895" [16] "290.688440" "290.710572" "290.773344" $ecochar [1] "367" "09:55:38" "367" "19:26:01" "290.732300" [6] "290.809961" "290.457874" "290.490467" "290.522256" "290.539961" [11] "290.572151" "290.588649" "290.648202" "290.666309" "290.694476" [16] "290.711779" "290.770929" "290.809961" $flag [1] "all" "LP" "LP" "flight" [5] "donotreporto2" "donotreporto2" "a" "b" [9] "c" "d" "e" "f" [13] "g" "h" "i" "j" [17] "k" "l" $ico2 [1] 0.0000 0.0000 290.8097 290.4136 290.7307 290.8092 290.4144 290.4579 [9] 290.4901 290.5190 290.5384 290.5681 290.5866 290.6434 290.6639 290.6884 [17] 290.7106 290.7733 $eco2 [1] 367.0000 290.4136 367.0000 290.8097 290.7323 290.8100 290.4579 290.4905 [9] 290.5223 290.5400 290.5722 290.5886 290.6482 290.6663 290.6945 290.7118 [17] 290.7709 290.8100 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 16345 16345 290.8097 7.964186 -0.00066450 0.01110595 0.01110595 16345 16346 16346 290.8097 7.965705 -0.00086435 0.01106115 0.01106115 16346 16347 16347 290.8098 7.964169 -0.00092200 0.01107385 0.01107385 16347 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 16345 10.5 1.00 58.00 39110.50 -1 7.969525 7.969254 16346 10.5 4.75 58.75 9786.75 1 7.971094 7.970742 16347 10.5 6.00 59.00 25.50 -1 7.969597 7.969221 vuvsigpdprcorr 16345 7.964726 16346 7.966232 16347 7.964707 [1] 0.8097111 0.8097382 0.8097653 [,1] [,2] [,3] [1,] 0.809722 -1 1 [2,] 0.809732 1 1 [3,] 0.809738 1 6 [4,] 0.809744 1 6 [5,] 0.809750 1 6 [6,] 0.809759 -1 6 [7,] 0.809765 -1 6 [8,] 0.809771 -1 6 [9,] 0.809777 -1 6 [10,] 0.809787 1 6 [11,] 0.809792 1 6 [12,] 0.809798 1 6 [13,] 0.809804 1 6 [1] "NON-INTEGER NGASNUM IN JOGAVES AT:" [1] 16346 $icochar [1] "0" "0" "19:26:01" "09:55:38" "290.730691" [6] "290.809156" "290.414417" "290.457874" "290.490065" "290.519037" [11] "290.538351" "290.568128" "290.586637" "290.643373" "290.663895" [16] "290.688440" "290.710572" "290.773344" $ecochar [1] "367" "09:55:38" "367" "19:26:01" "290.732300" [6] "290.809961" "290.457874" "290.490467" "290.522256" "290.539961" [11] "290.572151" "290.588649" "290.648202" "290.666309" "290.694476" [16] "290.711779" "290.770929" "290.809961" $flag [1] "all" "LP" "LP" "flight" [5] "donotreporto2" "donotreporto2" "a" "b" [9] "c" "d" "e" "f" [13] "g" "h" "i" "j" [17] "k" "l" $ico2 [1] 0.0000 0.0000 290.8097 290.4136 290.7307 290.8092 290.4144 290.4579 [9] 290.4901 290.5190 290.5384 290.5681 290.5866 290.6434 290.6639 290.6884 [17] 290.7106 290.7733 $eco2 [1] 367.0000 290.4136 367.0000 290.8097 290.7323 290.8100 290.4579 290.4905 [9] 290.5223 290.5400 290.5722 290.5886 290.6482 290.6663 290.6945 290.7118 [17] 290.7709 290.8100 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 16345 16345 290.8097 7.964186 -0.00066450 0.01110595 0.01110595 16345 16346 16346 290.8097 7.965705 -0.00086435 0.01106115 0.01106115 16346 16347 16347 290.8098 7.964169 -0.00092200 0.01107385 0.01107385 16347 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 16345 10.5 1.00 58.00 39110.50 -1 7.969525 7.969254 16346 10.5 4.75 58.75 9786.75 1 7.971094 7.970742 16347 10.5 6.00 59.00 25.50 -1 7.969597 7.969221 vuvsigpdprcorr 16345 7.964726 16346 7.966232 16347 7.964707 [1] 0.8097111 0.8097382 0.8097653 [,1] [,2] [,3] [1,] 0.809722 -1 1 [2,] 0.809732 1 1 [3,] 0.809738 1 6 [4,] 0.809744 1 6 [5,] 0.809750 1 6 [6,] 0.809759 -1 6 [7,] 0.809765 -1 6 [8,] 0.809771 -1 6 [9,] 0.809777 -1 6 [10,] 0.809787 1 6 [11,] 0.809792 1 6 [12,] 0.809798 1 6 [13,] 0.809804 1 6 [1] "JOGAVES DOES NOT MATCH" [1] "MASKING 20 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 04:29:59 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "RECALC TIME MATCHES" [1] "Tue May 13 04:29:59 PM MDT 2025 done recreating mr o2diffs" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 151.022 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 52.454 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 40.56 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 23.46 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 12 [1] 12 [1] 62 [1] 62 [1] 62 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 71 290.3648 -498.632264 1070128.7 -1 [2,] 133 290.3665 -269.193727 1070901.2 -1 [3,] 135 290.3666 -85.208552 1071101.8 -1 [4,] 197 290.3683 -378.655795 1071398.8 -1 [5,] 259 290.3700 -245.511730 1072004.9 -1 [6,] 451 290.3752 -499.153426 1072588.6 -1 [7,] 513 290.3769 -318.091702 1072722.0 -1 [8,] 773 290.3839 -506.016309 1071309.2 -1 [9,] 837 290.3857 -94.279758 1071288.0 -1 [10,] 1217 290.3961 -508.712382 1066110.1 -1 [11,] 1345 290.3996 -134.918678 1064827.9 -1 [12,] 1409 290.4014 -498.716766 1063604.7 -1 [13,] 1473 290.4031 -101.253319 1063217.4 -1 [14,] 1603 290.4067 110.112067 1061374.2 -1 [15,] 1609 290.4068 -228.546456 1060815.5 -1 [16,] 1768 290.4112 -89.372140 1054570.9 1 [17,] 1769 290.4112 -53.158319 1054381.6 -1 [18,] 1770 290.4112 -31.967530 1054325.2 1 [19,] 1890 290.4145 -158.402354 1048714.3 1 [20,] 1891 290.4145 -116.850821 1048511.0 -1 [21,] 1892 290.4146 -42.342611 1048504.3 1 [22,] 1898 290.4147 -134.510098 1048285.8 1 [23,] 1899 290.4148 -110.897669 1048092.4 -1 [24,] 1900 290.4148 -54.288124 1048065.3 1 [25,] 2793 290.4393 -234.768607 1008266.7 -1 [26,] 2861 290.4411 -453.010647 1006504.9 -1 [27,] 3927 290.4703 -222.086707 1018341.7 -1 [28,] 3997 290.4722 -126.278826 1019585.4 -1 [29,] 5377 290.5100 -236.271871 1010577.1 -1 [30,] 5383 290.5102 -455.660257 1010181.6 -1 [31,] 5445 290.5119 -108.372972 1009262.1 -1 [32,] 6909 290.5519 -205.793420 1010653.8 -1 [33,] 6915 290.5521 -38.951288 1010850.7 -1 [34,] 6977 290.5537 -419.739981 1010361.6 -1 [35,] 7333 290.5634 -210.856049 1005808.9 -1 [36,] 7339 290.5636 -408.763985 1005418.9 -1 [37,] 7403 290.5654 -105.668485 1003839.2 -1 [38,] 7467 290.5671 -298.441654 1001543.8 -1 [39,] 7531 290.5688 -79.648595 999564.4 -1 [40,] 8817 290.6040 -200.302148 990913.6 -1 [41,] 8887 290.6059 -496.794810 991077.9 -1 [42,] 10065 290.6382 -167.931507 997702.4 -1 [43,] 10071 290.6383 -510.238550 997500.5 -1 [44,] 10133 290.6400 -93.190340 999085.8 -1 [45,] 11599 290.6801 -172.835584 995504.1 -1 [46,] 11669 290.6820 -420.788015 996670.3 -1 [47,] 13273 290.7258 -143.732417 1000349.3 -1 [48,] 13279 290.7259 -497.052951 1000036.8 -1 [49,] 13341 290.7276 -110.525863 1000982.5 -1 [50,] 14263 290.7528 -171.078611 990361.8 -1 [51,] 14269 290.7529 -3.415263 990580.0 -1 [52,] 14333 290.7547 -480.933614 990969.0 -1 [53,] 16318 290.8090 -168.371463 987480.2 1 [54,] 16319 290.8090 -261.075112 987426.0 -1 [55,] 16320 290.8090 -297.744535 987791.3 1 [56,] 16347 290.8098 -183.117516 987454.8 -1 [57,] 16719 290.8199 -461.828105 991821.8 -1 [58,] 16781 290.8216 -217.844539 994489.6 -1 [59,] 16783 290.8217 -15.257353 994767.2 -1 [60,] 16845 290.8234 -344.634358 997241.0 -1 [61,] 16907 290.8250 -190.042258 1000505.4 -1 [62,] 16909 290.8251 -25.067457 1000737.0 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 3913 290.4699 9.929026e+03 [2,] 8748 290.6021 9.684927e+04 [3,] 9494 290.6225 2.915460e+02 [4,] 12413 290.7023 9.687500e+24 [5,] 14278 290.7532 2.951450e+02 [6,] 16612 290.8170 9.687500e+24 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 133.873 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 27.792 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 27.777 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 21.935 PER MEG" [1] 378.7285 408.7733 393.4141 398.4859 404.9634 [1] -552.7046 -698.1075 -583.4401 -707.8924 -714.3764 [1] "Nominal linear calibrations:" [1] "co2scl = 1.052 co2off = -0.18 o2scla = -0.055 o2offa = -123.2" [1] "(dV/V)/(dXO2/XO2) = -3.811" [1] "(dV/V)/d(O2/N2) = -3.013" [1] "Finding cal and sample periods" [1] "Median Cal: 2.45 minutes" [1] "Average Cal: 2.34 minutes" [1] "Shortest Cal: 0.04 minutes" [1] "Longest Cal: 5 minutes" [1] "Removed 5 calibration period(s) with less than 30 seconds of data" [1] "at: 6" [1] "at: 11" [1] "at: 26" [1] "at: 31" [1] "at: 61" [1] "Reading in aircraft data" [1] "Reading /scr/raf/stephens/HUMERGE/ATOM3/MMS/MMS-1HZ_DC8_20171017_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 17 items Read 17 items Read 1 item Read 1 item Read 18 items Read 613188 items [1] "Reading /scr/raf/stephens/HUMERGE/ATOM3/MMS/MMS-20Hz_DC8_20171017_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 25 items Read 25 items Read 1 item Read 1 item Read 26 items Read 17731142 items [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.00278" [1] "HS CO2 vs. PACAB: m = -0.00186, r^2 = 0.16" [1] "LS CO2 vs. PACAB: m = -0.00371, r^2 = 0.39" [1] "HS+LS LIH2O vs. PACAB: m = -4.98e-05" [1] "HS LIH2O vs. PACAB: m = -6.06e-05, r^2 = 0.54" [1] "LS LIH2O vs. PACAB: m = -3.89e-05, r^2 = 0.35" [1] "HS+LS CO2 vs. LIH2O: m = 35.3" [1] "HS CO2 vs. LIH2O: m = 37.3, r^2 = 0.33" [1] "LS CO2 vs. LIH2O: m = 33.3, r^2 = 0.15" [1] "APCO2 vs. PACAB: m = -0.00238, r^2 = 0.01" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = -0.0427" [1] "HS O2 vs. PACAB: m = -0.0545, r^2 = 0.18" [1] "LS O2 vs. PACAB: m = -0.0309, r^2 = 0.1" [1] "HS+LS O2 vs. LIH2O: m = 1000" [1] "HS O2 vs. LIH2O: m = 963, r^2 = 0.43" [1] "LS O2 vs. LIH2O: m = 1040, r^2 = 0.44" [1] "HS+LS O2 vs. PAO2: m = 8.85" [1] "HS O2 vs. PAO2: m = 9.54, r^2 = 0.6" [1] "LS O2 vs. PAO2: m = 8.17, r^2 = 0.85" [1] "HS+LS O2 vs. TPBOX: m = -2.31" [1] "HS O2 vs. TPBOX: m = -2.54, r^2 = 0.49" [1] "LS O2 vs. TPBOX: m = -2.08, r^2 = 0.58" [1] "APO vs. PACAB: m = 0.0395, r^2 = 0.01" [1] "APO vs. PAO2: m = -1.84, r^2 = 0" [1] "APO vs. TPBOX: m = -1.4, r^2 = 0.01" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 0.248, r^2 = 0.06" [1] "LS CO2 vs. LiCor Cell P: m = 0.0395, r^2 = 0" [1] "HS CO2 vs. CO2 Vol P: m = 0.674, r^2 = 0.72" [1] "LS CO2 vs. CO2 Vol P: m = 0.749, r^2 = 0.76" [1] "HS CO2 vs. SLOPE: m = 0.511, r^2 = 0.08" [1] "LS CO2 vs. SLOPE: m = -0.0487, r^2 = 0" [1] "HS O2 vs. O2 Vol P: m = 9.31, r^2 = 0.54" [1] "LS O2 vs. O2 Vol P: m = 8.89, r^2 = 0.79" [1] "HS O2 vs. O2 Cell T: m = -4.64, r^2 = 0.42" [1] "LS O2 vs. O2 Cell T: m = -4.76, r^2 = 0.72" [1] "HS O2 vs. CO2 Vol P: m = 9.77, r^2 = 0.37" [1] "LS O2 vs. CO2 Vol P: m = 12.9, r^2 = 0.81" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = -0.371, r^2 = 0" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = -3.2, r^2 = 0.03" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = 9.77, r^2 = 0.37" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = 12.9, r^2 = 0.81" [1] "HS O2 vs. LIH2O: m = 869, r^2 = 0.39" [1] "LS O2 vs. LIH2O: m = 742, r^2 = 0.3" [1] "HS O2 vs. SLOPE: m = 0.859, r^2 = 0.32" [1] "LS O2 vs. SLOPE: m = 1.04, r^2 = 0.32" [1] "HS CO2 vs. Time: m = 14.595, r^2 = 0.89" [1] "LS CO2 vs. Time: m = 14.581, r^2 = 0.87" [1] "HS CO2 vs. Cylinder T: m = 0.044, r^2 = 0" [1] "LS CO2 vs. Cylinder T: m = -0.254, r^2 = 0.014" [1] "HS CO2 vs. Regulator T: m = -0.126, r^2 = 0.03" [1] "LS CO2 vs. Regulator T: m = -0.16, r^2 = 0.046" [1] "HS CO2 vs. Ref. Volumes T: m = -0.153, r^2 = 0.02" [1] "LS CO2 vs. Ref. Volumes T: m = -0.659, r^2 = 0.319" [1] "HS CO2 vs. Manifold T: m = -0.171, r^2 = 0.49" [1] "LS CO2 vs. Manifold T: m = -0.197, r^2 = 0.795" [1] "HS CO2 vs. Pump Box T: m = -0.15, r^2 = 0.61" [1] "LS CO2 vs. Pump Box T: m = -0.132, r^2 = 0.596" [1] "HS O2 vs. Cylinder T: m = -7.223, r^2 = 0.03" [1] "LS O2 vs. Cylinder T: m = -0.221, r^2 = 0" [1] "HS O2 vs. Regulator T: m = -1.465, r^2 = 0.01" [1] "LS O2 vs. Regulator T: m = -0.587, r^2 = 0.002" [1] "HS O2 vs. Ref. Volumes T: m = -8.099, r^2 = 0.16" [1] "LS O2 vs. Ref. Volumes T: m = -8.519, r^2 = 0.193" [1] "HS O2 vs. Manifold T: m = -3.827, r^2 = 0.59" [1] "LS O2 vs. Manifold T: m = -3.291, r^2 = 0.806" [1] "HS O2 vs. Pump Box T: m = -2.869, r^2 = 0.55" [1] "LS O2 vs. Pump Box T: m = -2.204, r^2 = 0.602" [1] "HS CO2 vs. WT P: m = -0.003, r^2 = 0.25" [1] "LS CO2 vs. WT P: m = -0.004, r^2 = 0.34" [1] "HS CO2 vs. SP P: m = -0.00256, r^2 = 0.25" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.029, r^2 = 0.23" [1] "HS CO2 vs. SP P comb with PACAB: m = -0.032, r^2 = 0.23" [1] "LS CO2 vs. SP P: m = -0.00362, r^2 = 0.37" [1] "LS CO2 vs. PACAB comb with SP P: m = -0.016, r^2 = 0.37" [1] "LS CO2 vs. SP P comb with PACAB: m = 0.012, r^2 = 0.37" [1] "HS CO2 vs. WT FL: m = 0.124, r^2 = 0.09" [1] "LS CO2 vs. WT FL: m = 0.182, r^2 = 0.165" [1] "HS CO2 vs. SP FL: m = 0.096, r^2 = 0.42" [1] "LS CO2 vs. SP FL: m = 0.109, r^2 = 0.587" [1] "HS O2 vs. SLPDIFF: m = 0.341, r^2 = 0.05" [1] "LS O2 vs. SLPDIFF: m = 1.154, r^2 = 0.233" [1] "HS O2 vs. WT P: m = -0.057, r^2 = 0.17" [1] "LS O2 vs. WT P: m = -0.051, r^2 = 0.172" [1] "HS O2 vs. SP P: m = -0.061, r^2 = 0.21" [1] "LS O2 vs. SP P: m = -0.051, r^2 = 0.187" [1] "HS O2 vs. WT FL: m = 2.481, r^2 = 0.08" [1] "LS O2 vs. WT FL: m = 4.351, r^2 = 0.341" [1] "HS O2 vs. SP FL: m = 1.865, r^2 = 0.39" [1] "LS O2 vs. SP FL: m = 1.623, r^2 = 0.47" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): 48.45, 64.3" [1] "Empirical LP O2 lag flow(s): 96.3, 99.2" [1] "Empirical LP CO2 lag time(s): 43.26, 47.88" [1] "Empirical LP CO2 lag flow(s): 96.3, 99.2" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.4" [1] "Median all HS CO2 SD = 0.38" [1] "Median all LS CO2 SD = 0.43" [1] "Median all LT CO2 SD = 0.4" [1] "Median all WT CO2 SD = 0.39" [1] "Median all HS or LS CO2 SD = 0.41" [1] "Median all cal O2 SD = 1.75" [1] "Median all HS O2 SD = 1.69" [1] "Median all LS O2 SD = 1.8" [1] "Median all LT O2 SD = 1.76" [1] "Median all WT O2 SD = 1.46" [1] "Median all HS or LS O2 SD = 1.71" [1] "Median all cal CO2 Slope = 0" [1] "Median all HS CO2 Slope = -0.03" [1] "Median all LS CO2 Slope = -0.02" [1] "Median all LT CO2 Slope = 0.03" [1] "Median all WT CO2 Slope = 0.07" [1] "Median all HS or LS CO2 Slope = -0.02" [1] "Median all cal O2 Slope = -0.59" [1] "Median all HS O2 Slope = -0.37" [1] "Median all LS O2 Slope = -1.53" [1] "Median all LT O2 Slope = -0.5" [1] "Median all WT O2 Slope = -0.52" [1] "Median all HS or LS O2 Slope = -0.91" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 4.93 per meg" [1] "Initial O2 Calibration Offset = 4.11 per meg" [1] "SD of O2 Calibration (post-takeoff) = 3.54 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = 7.15 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = 6.2 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using ATom2 inlet volumes" [1] "before any lag: 31356.03 71422.73" [1] "Time lag adjustments = 17 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 61.5 at 101 sccm" [1] "Median O2 delay + tlagff = 62.3 at 101 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 60.4 at 101 sccm" [1] "Median O2 delay from 3-way + tlagff = 61.2 at 101 sccm" [1] "after calc and ff lag: 31288.39 71355.77" [1] "2025-05-13 16:30:57 MDT" [1] "Calculating 1-sec interpolated values" [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] -21.0302826 -21.6770377 -31.3195014 -33.4434622 -33.4434622 -33.4434622 [7] -17.0693683 -13.0152684 -7.8675878 2.2871656 5.3480353 6.5487054 [13] 6.5487054 6.1837605 -2.1026620 -29.7328147 -29.7328147 -26.3963417 [19] -18.2775103 -9.5810827 -9.5810827 -9.5810827 -9.5810827 -5.8054479 [25] -1.0449920 -1.0449920 -1.0449920 0.0376210 3.0468417 1.6464641 [31] 0.7665514 0.2575595 -12.2942086 -12.2942086 -12.2942086 -12.2942086 [37] 1.6066882 1.6066882 2.3562118 2.9154811 3.7127897 3.7127897 [43] 3.7127897 3.7127897 3.8245620 7.6423511 7.6423511 7.6423511 [49] 6.8931818 1.5742626 -0.8830474 -0.4825850 0.2779307 -2.7553784 [55] -5.2100289 -5.2750516 -5.2750516 2.7741075 2.7741075 2.7741075 [61] 2.6703026 -3.5852131 -3.8542133 -4.5382431 -5.2062461 -3.4268536 [67] -3.0110022 -3.0110022 -3.0110022 -4.6052075 -6.6785157 -6.6785157 [73] -6.0595871 -1.4770682 -0.6456367 -0.6456367 -0.6456367 -6.5154641 [79] -14.6978970 -14.6978970 -14.6978970 -8.2894244 -0.4109210 -0.4109210 [85] -0.4180265 -4.7862632 -8.0517548 -8.0517548 -10.1012048 -11.4442232 [91] -9.5417270 -6.1338263 -2.8393981 -2.8250383 -2.8250383 -9.2815729 [97] -12.0652910 -13.2270425 -13.2270425 -9.5488905 -14.1601835 -14.1601835 [103] -14.1601835 -26.0592540 -24.5392211 -24.5392211 -24.5392211 -10.6397385 [109] -8.1884733 -8.4503506 -8.4503506 -11.9793235 -14.9473631 -13.2244799 [115] -11.5142453 -10.6536744 -6.2010680 -6.2010680 -6.8525855 -10.2709551 [121] -8.6429332 -8.6429332 -8.6429332 -10.9117135 -17.7258364 -17.7258364 [127] -17.7258364 -15.7963728 -14.7324919 -11.6517361 -11.6517361 -11.6517361 [133] -4.2801185 1.4809039 1.4809039 1.4809039 -2.5541273 -24.0217168 [139] -25.7705910 -25.7705910 -25.7705910 -19.1006322 -17.9914009 -17.6183611 [145] -17.6050909 -10.6755503 -9.4150911 -7.1215661 -1.9997939 -0.3623169 [151] -0.1050466 -0.1050466 -0.1050466 -10.5215086 -24.5945953 -24.5945953 [157] -24.5945953 -25.3940009 -27.7784313 -26.7979268 -26.0196807 -26.0196807 [163] -25.7227520 -25.7227520 -25.7227520 -23.0063794 -12.7628740 -6.3494987 [169] -6.3494987 -6.3494987 -6.5958063 -6.5987273 -13.5165013 -19.2462908 [175] -14.5841889 -7.1457230 -7.1457230 -7.4934194 -8.8341000 -35.6327612 [181] -35.6327612 -35.6327612 -35.2270250 -11.4336672 -11.3816368 -11.3816368 [187] -11.3816368 -20.9138778 -20.0878976 -19.5968808 -19.5968808 -17.1883143 [193] -17.2602397 -18.2201295 -18.2201295 -16.7423683 -14.9206295 -11.2755484 [199] -11.2755484 -11.3901436 -12.9470562 -17.1141732 -17.1141732 -17.1141732 [205] -21.3110560 -24.2120043 -25.2348276 -25.2348276 -30.8859057 -16.9906751 [211] -13.4357343 -13.4357343 -5.3155088 -25.1809224 -26.0459420 -26.0459420 [217] -25.9030474 -30.2279253 -30.5718242 -30.5718242 -30.5718242 -25.6252253 [223] -22.3136421 -21.4931237 -21.4931237 -8.2502779 -8.8021328 -10.1513780 [229] -10.1513780 -25.3724401 -25.3724401 -26.4160331 -26.8560819 -11.1839542 [235] -8.5805326 -11.1622553 -14.6461819 -36.5099603 -36.5099603 -36.5099603 [241] -28.9394736 -22.7908757 -18.8373942 -18.8373942 -18.8373942 -21.2471451 [247] -7.1938483 -8.3201450 -8.3201450 -8.3201450 -9.4216724 -7.4114222 [253] -6.2753786 -6.2753786 -23.4768795 -23.5200629 -24.6347929 -25.2431956 [259] -25.2338610 -25.1989930 -25.1989930 -24.7217999 -19.0283409 -13.6447233 [265] -13.6447233 -13.6447233 -14.0481236 -19.6525418 -22.8905873 -24.0059641 [271] -24.2968896 -31.6821852 -31.6821852 -31.9816932 -32.5969701 -17.9774113 [277] -21.7666388 -22.8177242 -22.8177242 -30.5907990 -30.6600636 -30.6600636 [283] -26.0120282 -20.0534338 -23.8264242 -23.8264242 -23.8264242 -24.3119929 [289] -25.7902175 -26.0915861 -29.8372680 -32.8393265 -27.9802519 -27.9923287 [295] -27.9923287 -27.9923287 -29.0894395 -29.0894395 -27.5160863 -25.4307501 [301] -19.5198621 -16.5907924 -16.0679041 -16.0679041 -16.2718710 -18.2332429 [307] -18.2332429 -18.7824309 -19.5231064 -16.8308248 -19.2226731 -21.4200746 [313] -22.2687623 -16.6673265 -16.6673265 -16.6673265 -16.6673265 -21.9313504 [319] -21.9313504 -18.5787965 -13.1588326 -9.0452536 -8.1243353 -8.1243353 [325] -8.1243353 -8.1243353 -5.2787850 -5.2787850 -5.2787850 -5.2787850 [331] -0.8725697 -0.8725697 -3.0306004 -5.2051636 -7.8338798 -9.2374005 [337] -9.2374005 -9.2374005 -20.2491793 -20.2606613 -20.2606613 -20.2606613 [343] -17.3487609 -13.7024620 -13.7024620 -14.3026362 -15.0159763 -10.1924284 [349] -10.6339884 -10.7730770 -10.9282925 -13.4961577 -13.4961577 -13.4961577 [355] -13.4961577 -12.9490124 -12.7528656 -12.7528656 -12.7528656 -13.9769008 [361] -16.5905875 -16.6065362 -16.6273444 -16.5559653 -15.8301898 -15.9393493 [367] -15.9393493 -15.9393493 -12.2985478 -12.2985478 -12.2985478 -12.2985478 [373] -17.5879442 -17.5879442 -18.0003926 -18.5521854 -18.9402421 -19.4359332 [379] -19.4359332 -19.4359332 -19.9539928 -21.7605403 -21.7605403 -21.7605403 [385] -21.7605403 -17.7541682 -15.9359180 -13.7914919 -13.1669919 -11.5930206 [391] -11.5930206 -11.5930206 -11.5930206 -15.5334327 -15.5001998 -15.2627431 [397] -15.0168593 -15.8735942 -16.4906432 -16.4828860 -16.4828860 -16.4828860 [403] -8.3477421 -8.3715180 -8.5444690 -8.7221532 -9.4278060 -10.1752361 [409] -10.3463102 -10.3463102 -15.8629189 -15.8629189 -15.8869817 -15.9367203 [415] -19.8454952 -22.4692909 -25.1315828 -25.6551982 -23.0594581 -16.3313215 [421] -16.3313215 -16.3313215 -16.3313215 -24.8993599 -23.7847298 -20.5452783 [427] -18.4236410 -19.3895796 -19.3895796 -19.3895796 -19.3895796 -6.5115766 [433] -5.7897248 -6.9256592 -9.6369131 -14.9918624 -36.8163791 -36.8163791 [439] -36.8163791 -33.0607118 -29.7176961 -29.7176961 -29.7176961 -29.7176961 [445] -22.7970274 -21.2990248 -18.5327703 [1] 85.16217 87.03313 88.52439 89.90544 91.36674 92.78050 93.75863 [8] 94.79449 95.99362 97.14154 98.27421 100.08816 101.86071 103.84763 [15] 105.55799 107.74233 110.21954 112.57679 114.74666 116.45880 117.68855 [22] 118.64917 119.23452 119.53750 119.86594 120.25924 120.70393 121.46547 [29] 122.12686 123.14772 123.92481 124.44857 125.04062 125.54827 126.18834 [36] 127.39959 128.27124 129.54119 130.91015 132.17193 133.11677 134.07091 [43] 135.31487 136.57592 137.96093 139.21208 140.83200 142.19399 143.56715 [50] 144.68351 145.26014 145.16617 144.98771 145.19762 145.77362 146.51788 [57] 147.55529 148.29526 149.36250 150.34731 151.45803 152.51224 153.49510 [64] 154.40002 155.27725 156.18213 157.21870 158.14160 158.94950 159.96518 [71] 161.02265 162.23573 163.95521 165.73855 167.42484 169.73891 171.96490 [78] 174.76685 177.52938 180.06982 182.90798 186.79126 189.63381 192.64072 [85] 195.42052 198.40267 201.27897 204.15140 206.98473 209.81953 212.62858 [92] 215.45392 217.97795 220.83391 223.18839 226.34935 229.01878 231.70984 [99] 234.16465 236.96946 239.50534 242.43920 244.93627 247.53095 249.86999 [106] 252.06622 254.24293 256.68162 258.96668 261.12929 262.78672 264.97459 [113] 266.85795 268.74297 270.49266 272.41148 274.10423 275.95164 277.71481 [120] 279.26165 281.09670 283.08210 284.71601 286.54846 288.39257 290.18240 [127] 292.04871 293.75036 295.36072 297.43821 299.13131 300.72887 302.67156 [134] 304.14814 305.76242 307.24744 308.88920 310.39820 311.82414 313.17263 [141] 314.62495 316.07285 317.37287 319.15574 320.59817 322.08325 323.54087 [148] 324.78497 326.26394 327.60327 328.96699 330.20882 331.49555 332.78788 [155] 333.94773 335.15986 336.42155 337.82801 339.00480 340.26623 341.33996 [162] 342.69411 343.98763 345.29944 346.28376 347.79750 349.05294 350.18658 [169] 351.51008 352.73924 354.00402 355.28161 356.57714 357.77891 359.24887 [176] 360.61409 361.99132 363.38211 364.65242 366.08303 367.52464 368.71878 [183] 370.28286 371.93717 373.12272 374.88559 376.22525 377.76827 379.29645 [190] 380.79323 382.21808 383.92386 385.27362 387.47665 389.05964 390.83078 [197] 392.48581 394.25568 395.76519 397.61428 399.31391 401.08126 403.03352 [204] 404.95595 407.00688 408.80339 410.83746 413.03351 415.01589 417.14349 [211] 419.02041 421.01858 422.88481 424.72940 426.51352 428.36959 430.25914 [218] 432.02310 433.96406 435.80938 437.54665 439.38837 440.83316 442.38051 [225] 444.15564 445.77549 447.23014 448.97439 450.65492 452.22463 453.97074 [232] 455.34205 457.05831 458.59165 460.34379 461.81304 463.31812 464.79476 [239] 466.22903 467.58041 469.21338 470.67463 472.01458 473.44732 474.76185 [246] 476.25794 477.53168 478.67018 480.20859 481.56074 482.89669 484.12583 [253] 485.48030 486.86343 488.30330 489.57906 490.89059 492.22275 493.30192 [260] 494.93833 496.01251 497.14019 498.18626 499.29206 500.36469 501.57981 [267] 502.68535 503.88323 504.95350 506.08834 507.09810 508.07364 509.00998 [274] 510.00671 510.97097 511.90613 512.84334 513.75203 514.73149 515.70638 [281] 516.51714 517.48208 518.30747 519.23153 520.25761 521.02032 521.92370 [288] 522.82171 523.57710 524.36965 525.06257 525.87146 526.67666 527.36484 [295] 528.01782 528.83150 529.54318 530.24031 530.97070 531.70209 532.43010 [302] 533.17292 533.90335 534.65436 535.36732 535.98541 536.71615 537.43720 [309] 538.01308 538.66538 539.38287 540.04202 540.57416 541.20582 541.82203 [316] 542.39765 543.12621 543.77853 544.45718 545.18839 545.68631 546.29270 [323] 546.71475 547.25438 547.72133 548.15532 548.63909 549.14732 549.57670 [330] 550.06456 550.52301 550.99268 551.44536 551.89989 552.29748 552.87072 [337] 553.28858 553.76874 554.23977 554.74755 555.15739 555.66646 556.11216 [344] 556.54777 557.08048 557.52731 557.95170 558.41900 558.77375 559.20875 [351] 559.69419 560.07568 560.42395 560.82331 561.25175 561.64875 562.07990 [358] 562.54484 562.96104 563.38347 563.84324 564.36278 564.90315 565.31942 [365] 565.85855 566.36498 566.85319 567.40345 567.99060 568.52847 569.05363 [372] 569.60888 570.14245 570.61401 571.16135 571.60687 572.15316 572.69662 [379] 573.13003 573.70844 574.21457 574.75974 575.25597 575.74300 576.31565 [386] 576.89300 577.57221 578.19271 578.83775 579.46524 580.17352 580.87904 [393] 581.58639 582.24239 582.87398 583.50475 584.18683 584.85392 585.46589 [400] 586.06290 586.72088 587.26029 587.84364 588.46367 589.06210 589.67690 [407] 590.26308 590.92199 591.46774 592.17974 592.73969 593.46563 594.11098 [414] 594.72698 595.36590 595.93757 596.50139 597.13809 597.66846 598.18140 [421] 598.77864 599.35071 599.91591 600.58239 601.06227 601.75708 602.27083 [428] 602.90031 603.52694 604.13763 604.74695 605.28726 605.89489 606.58781 [435] 607.17034 607.56470 608.21329 608.84367 609.39781 609.91814 610.39847 [442] 610.92438 611.37164 611.80318 612.18167 612.61161 613.04918 [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Not reporting 59 O2 values from manual exclude period 290.730691 to 290.7323" [1] "Not reporting 59 APO values from manual exclude period 290.730691 to 290.7323" [1] "Not reporting 30 O2 values from manual exclude period 290.809156 to 290.809961" [1] "Not reporting 30 APO values from manual exclude period 290.809156 to 290.809961" [1] "Not reporting 137 smoothed O2 values from manual exclude period 290.730028443593 to 290.731609961696" [1] "Not reporting 137 smoothed APO values from manual exclude period 290.730028443593 to 290.731609961696" [1] "Not reporting 65 smoothed O2 values from manual exclude period 290.808387898196 to 290.809198931018" [1] "Not reporting 65 smoothed APO values from manual exclude period 290.808387898196 to 290.809198931018" [1] "Not reporting 137 smoothed O2 values from manual exclude period 290.730028443593 to 290.731609961696" [1] "Not reporting 137 smoothed APO values from manual exclude period 290.730028443593 to 290.731609961696" [1] "Not reporting 65 smoothed O2 values from manual exclude period 290.808387898196 to 290.809198931018" [1] "Not reporting 65 smoothed APO values from manual exclude period 290.808387898196 to 290.809198931018" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1710/AO2_DC8_20171017_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 136264 items [1] 8 3407 34066 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 271 271 271 271 271 271 [1] 52570 52580 52590 52600 52610 52620 [1] "2017-09-28 14:36:10 UTC" "2017-09-28 14:36:20 UTC" [3] "2017-09-28 14:36:30 UTC" "2017-09-28 14:36:40 UTC" [5] "2017-09-28 14:36:50 UTC" "2017-09-28 14:37:00 UTC" [1] NA NA NA NA NA NA [1] 33779 [1] "Average Date / Time for slice RF08 = 2017-10-17 14:56:30.5293691158295" [1] "sum(lsel) = 2758" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -13.505 820.884 [1] -13.505 820.884 [1] 179.116 1013.505 [1] 0 999999 [1] "highestmid = 705.325" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM3 RF08 APO_AO2 range = -357.69,-332.53" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1710/AO2_DC8_20171017_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 136264 items [1] 8 3407 34066 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 271 271 271 271 271 271 [1] 52570 52580 52590 52600 52610 52620 [1] "2017-09-28 14:36:10 UTC" "2017-09-28 14:36:20 UTC" [3] "2017-09-28 14:36:30 UTC" "2017-09-28 14:36:40 UTC" [5] "2017-09-28 14:36:50 UTC" "2017-09-28 14:37:00 UTC" [1] NA NA NA NA NA NA [1] 33789 [1] "Average Date / Time for slice RF08 = 2017-10-17 14:56:34.7154765129089" [1] "sum(lsel) = 2759" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -13.505 820.884 [1] -13.505 820.884 [1] 179.116 1013.505 [1] 0 999999 [1] "highestmid = 705.325" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM3 RF08 O2_AO2 range = -664.58,-616.59" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1710/AO2_DC8_20171017_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 136264 items [1] 8 3407 34066 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 271 271 271 271 271 271 [1] 52570 52580 52590 52600 52610 52620 [1] "2017-09-28 14:36:10 UTC" "2017-09-28 14:36:20 UTC" [3] "2017-09-28 14:36:30 UTC" "2017-09-28 14:36:40 UTC" [5] "2017-09-28 14:36:50 UTC" "2017-09-28 14:37:00 UTC" [1] NA NA NA NA NA NA [1] 34275 [1] "Average Date / Time for slice RF08 = 2017-10-17 14:57:25.6750903129578" [1] "sum(lsel) = 2770" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -13.505 820.884 [1] -13.505 820.884 [1] 179.116 1013.505 [1] 0 999999 [1] "highestmid = 705.325" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM3 RF08 CO2_AO2 range = 403.12,411" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "making html" [1] "making index html"