[1] "2025-05-13 16:25:28 MDT" options [1,] "file" "171014a" [2,] "flight" "RF07" [3,] "project" "ATOM3" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "17" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "full" [48,] "o2caltype" "full" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "TRUE" [64,] "icartt" "lookup" [65,] "icarttrev" "1" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "171014a" [1] "Reading in flight and plotting intervals" Read 20 records [1] "Reading in /scr/raf/stephens/AO2DAT/171014a.mr" Read 18637 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.42 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.42 seconds" [1] "New JOGEST = 2.42 seconds" [1] "New VALVE SKIP = 25 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/171014a.hr" Read 74554 records [1] "HR FILE LENGTH NOT NSWITCH * MRDATA FILE LENGTH" [1] 18637 74551 [1] "HR FILE LENGTH NOT MULTIPLE OF NSWITCH" [1] 18637 74551 [1] "Converting hrdata statout" [1] "Tue May 13 04:25:28 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30767 description: HS CO2 = 378.73 O2 = -552.8" [1] "position 2 cylinder OK30768 description: LS CO2 = 408.77 O2 = -698.2" [1] "position 3 cylinder OK30772 description: LT CO2 = 393.41 O2 = -583.4" [1] "position 4 cylinder OK30769 description: WT CO2 = 404.96 O2 = -714.4" [1] "position 5 cylinder OK30770 description: LP CO2 = 398.48 O2 = -707.8" [1] 378.7279 408.7724 393.4143 404.9610 398.4837 [1] -552.8011 -698.1823 -583.3931 -714.4340 -707.7823 [1] "Nominal linear calibrations:" [1] "co2scl = 1.058 co2off = -5.24 o2scla = -0.054 o2offa = -124" [1] "(dV/V)/(dXO2/XO2) = -3.853" [1] "(dV/V)/d(O2/N2) = -3.046" [1] "Reading in very high resolution timeseries" Read 372740 records [1] 372740 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 04:25:29 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 04:25:31 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.046" [1] "o2scaleavenew_drelVdrelP = -3.853" [1] "median(o2scalenew) = -3.048" [1] "Empirical dV/V vs dP/P relationship =-4.246, r^2 =0.495, damping =1.102" [1] "Tue May 13 04:25:31 PM MDT 2025 done redoing corrections" [1] "NON-INTEGER NGAS IN JOGAVES AT:" [1] 17763 17812 17862 17911 $icochar [1] "0" "0" "11:34:31" "22:15:43" "22:22:15" [6] "22:26:15" "287.482334" "287.522231" "287.540365" "287.600210" [11] "287.634666" "287.662322" "287.684084" "287.720807" "287.763877" [16] "287.782465" "287.797879" "287.828709" "287.863618" "287.894901" $ecochar [1] "367" "11:34:31" "22:15:43" "22:20:15" "22:24:16" [6] "367" "287.520417" "287.540365" "287.600210" "287.634666" [11] "287.662322" "287.684084" "287.720807" "287.763877" "287.782465" [16] "287.797879" "287.828709" "287.863618" "287.894901" "287.928903" $flag [1] "all" "LP" "flight" "LP" "LP" "LP" "a" "b" [9] "c" "d" "e" "f" "g" "h" "i" "j" [17] "k" "l" "m" "n" $ico2 [1] 0.0000 0.0000 287.4823 287.9276 287.9321 287.9349 287.4823 287.5222 [9] 287.5404 287.6002 287.6347 287.6623 287.6841 287.7208 287.7639 287.7825 [17] 287.7979 287.8287 287.8636 287.8949 $eco2 [1] 367.0000 287.4823 287.9276 287.9307 287.9335 367.0000 287.5204 287.5404 [9] 287.6002 287.6347 287.6623 287.6841 287.7208 287.7639 287.7825 287.7979 [17] 287.8287 287.8636 287.8949 287.9289 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 17762 17763 287.9307 7.923852 -0.0011582 0.01311305 0.01311305 17763 17763 17764 287.9307 7.921224 -0.0009017 0.01298580 0.01298580 17764 17764 17765 287.9308 7.923437 -0.0009299 0.01290695 0.01290695 17765 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 17762 10.5 6.00 65.00 2230.50 -1 7.930253 7.929773 17763 10.5 4.75 65.25 1686.75 1 7.927457 7.927084 17764 10.5 1.00 66.00 15.50 -1 7.929642 7.929257 vuvsigpdprcorr 17762 7.924341 17763 7.921706 17764 7.923911 [1] 0.9306957 0.9307232 0.9307507 [,1] [,2] [,3] [1,] 0.930690 -1 6 [2,] 0.930696 -1 6 [3,] 0.930701 -1 6 [4,] 0.930707 -1 6 [5,] 0.930717 1 6 [6,] 0.930723 1 6 [7,] 0.930729 1 6 [8,] 0.930735 1 1 [9,] 0.930744 -1 1 [10,] 0.930751 -1 1 [11,] 0.930756 -1 1 [12,] 0.930763 -1 1 [13,] 0.930773 1 1 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 17811 17812 287.9321 7.917166 -0.00095615 0.01303355 0.01303355 17812 17812 17813 287.9321 7.915742 -0.00075555 0.01303940 0.01303940 17813 17813 17814 287.9321 7.917001 -0.00084080 0.01307290 0.01307290 17814 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 17811 10.5 1.00 66.00 955.5 1 7.923443 7.923047 17812 10.5 2.25 66.25 730.5 -1 7.921947 7.921635 17813 10.5 6.00 67.00 15.5 1 7.923230 7.922882 vuvsigpdprcorr 17811 7.917652 17812 7.916239 17813 7.917471 [1] 0.9320822 0.9321099 0.9321378 [,1] [,2] [,3] [1,] 0.932076 1 1 [2,] 0.932082 1 1 [3,] 0.932088 1 1 [4,] 0.932094 1 1 [5,] 0.932104 -1 1 [6,] 0.932110 -1 1 [7,] 0.932115 -1 1 [8,] 0.932122 -1 6 [9,] 0.932132 1 6 [10,] 0.932138 1 6 [11,] 0.932143 1 6 [12,] 0.932149 1 6 [13,] 0.932160 -1 6 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 17861 17862 287.9335 7.914430 -0.00082075 0.01320065 0.01320065 17862 17862 17863 287.9335 7.914464 -0.00088245 0.01320805 0.01320805 17863 17863 17864 287.9335 7.914334 -0.00087905 0.01318770 0.01318770 17864 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 17861 10.5 6.00 67.00 975.5 1 7.920719 7.920379 17862 10.5 4.75 67.25 745.5 -1 7.920790 7.920424 17863 10.5 1.00 68.00 15.5 1 7.920653 7.920290 vuvsigpdprcorr 17861 7.914917 17862 7.914958 17863 7.914832 [1] 0.9334834 0.9335110 0.9335390 [,1] [,2] [,3] [1,] 0.933477 1 6 [2,] 0.933484 1 6 [3,] 0.933489 1 6 [4,] 0.933495 1 6 [5,] 0.933505 -1 6 [6,] 0.933511 -1 6 [7,] 0.933516 -1 6 [8,] 0.933523 -1 1 [9,] 0.933533 1 1 [10,] 0.933539 1 1 [11,] 0.933545 1 1 [12,] 0.933550 1 1 [13,] 0.933561 -1 1 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 17910 17911 287.9349 7.913250 -0.0008612 0.01364850 0.01364850 17911 17911 17912 287.9349 7.914770 -0.0008734 0.01361915 0.01361915 17912 17912 17913 287.9349 7.913377 -0.0008842 0.01362620 0.01362620 17913 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 17910 10.5 1.00 68.00 955.5 -1 7.919778 7.919422 17911 10.5 2.25 68.25 730.5 1 7.921257 7.920896 17912 10.5 6.00 69.00 15.5 -1 7.919890 7.919525 vuvsigpdprcorr 17910 7.913778 17911 7.915264 17912 7.913891 [1] 0.9348602 0.9348882 0.9349155 [,1] [,2] [,3] [1,] 0.934854 -1 1 [2,] 0.934860 -1 1 [3,] 0.934866 -1 1 [4,] 0.934872 -1 1 [5,] 0.934882 1 1 [6,] 0.934888 1 1 [7,] 0.934894 1 1 [8,] 0.934900 1 6 [9,] 0.934909 -1 6 [10,] 0.934915 -1 6 [11,] 0.934921 -1 6 [12,] 0.934928 -1 6 [13,] 0.934938 1 6 [1] "NON-INTEGER NGASNUM IN JOGAVES AT:" [1] 17763 17812 17862 17911 $icochar [1] "0" "0" "11:34:31" "22:15:43" "22:22:15" [6] "22:26:15" "287.482334" "287.522231" "287.540365" "287.600210" [11] "287.634666" "287.662322" "287.684084" "287.720807" "287.763877" [16] "287.782465" "287.797879" "287.828709" "287.863618" "287.894901" $ecochar [1] "367" "11:34:31" "22:15:43" "22:20:15" "22:24:16" [6] "367" "287.520417" "287.540365" "287.600210" "287.634666" [11] "287.662322" "287.684084" "287.720807" "287.763877" "287.782465" [16] "287.797879" "287.828709" "287.863618" "287.894901" "287.928903" $flag [1] "all" "LP" "flight" "LP" "LP" "LP" "a" "b" [9] "c" "d" "e" "f" "g" "h" "i" "j" [17] "k" "l" "m" "n" $ico2 [1] 0.0000 0.0000 287.4823 287.9276 287.9321 287.9349 287.4823 287.5222 [9] 287.5404 287.6002 287.6347 287.6623 287.6841 287.7208 287.7639 287.7825 [17] 287.7979 287.8287 287.8636 287.8949 $eco2 [1] 367.0000 287.4823 287.9276 287.9307 287.9335 367.0000 287.5204 287.5404 [9] 287.6002 287.6347 287.6623 287.6841 287.7208 287.7639 287.7825 287.7979 [17] 287.8287 287.8636 287.8949 287.9289 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 17762 17763 287.9307 7.923852 -0.0011582 0.01311305 0.01311305 17763 17763 17764 287.9307 7.921224 -0.0009017 0.01298580 0.01298580 17764 17764 17765 287.9308 7.923437 -0.0009299 0.01290695 0.01290695 17765 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 17762 10.5 6.00 65.00 2230.50 -1 7.930253 7.929773 17763 10.5 4.75 65.25 1686.75 1 7.927457 7.927084 17764 10.5 1.00 66.00 15.50 -1 7.929642 7.929257 vuvsigpdprcorr 17762 7.924341 17763 7.921706 17764 7.923911 [1] 0.9306957 0.9307232 0.9307507 [,1] [,2] [,3] [1,] 0.930690 -1 6 [2,] 0.930696 -1 6 [3,] 0.930701 -1 6 [4,] 0.930707 -1 6 [5,] 0.930717 1 6 [6,] 0.930723 1 6 [7,] 0.930729 1 6 [8,] 0.930735 1 1 [9,] 0.930744 -1 1 [10,] 0.930751 -1 1 [11,] 0.930756 -1 1 [12,] 0.930763 -1 1 [13,] 0.930773 1 1 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 17811 17812 287.9321 7.917166 -0.00095615 0.01303355 0.01303355 17812 17812 17813 287.9321 7.915742 -0.00075555 0.01303940 0.01303940 17813 17813 17814 287.9321 7.917001 -0.00084080 0.01307290 0.01307290 17814 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 17811 10.5 1.00 66.00 955.5 1 7.923443 7.923047 17812 10.5 2.25 66.25 730.5 -1 7.921947 7.921635 17813 10.5 6.00 67.00 15.5 1 7.923230 7.922882 vuvsigpdprcorr 17811 7.917652 17812 7.916239 17813 7.917471 [1] 0.9320822 0.9321099 0.9321378 [,1] [,2] [,3] [1,] 0.932076 1 1 [2,] 0.932082 1 1 [3,] 0.932088 1 1 [4,] 0.932094 1 1 [5,] 0.932104 -1 1 [6,] 0.932110 -1 1 [7,] 0.932115 -1 1 [8,] 0.932122 -1 6 [9,] 0.932132 1 6 [10,] 0.932138 1 6 [11,] 0.932143 1 6 [12,] 0.932149 1 6 [13,] 0.932160 -1 6 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 17861 17862 287.9335 7.914430 -0.00082075 0.01320065 0.01320065 17862 17862 17863 287.9335 7.914464 -0.00088245 0.01320805 0.01320805 17863 17863 17864 287.9335 7.914334 -0.00087905 0.01318770 0.01318770 17864 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 17861 10.5 6.00 67.00 975.5 1 7.920719 7.920379 17862 10.5 4.75 67.25 745.5 -1 7.920790 7.920424 17863 10.5 1.00 68.00 15.5 1 7.920653 7.920290 vuvsigpdprcorr 17861 7.914917 17862 7.914958 17863 7.914832 [1] 0.9334834 0.9335110 0.9335390 [,1] [,2] [,3] [1,] 0.933477 1 6 [2,] 0.933484 1 6 [3,] 0.933489 1 6 [4,] 0.933495 1 6 [5,] 0.933505 -1 6 [6,] 0.933511 -1 6 [7,] 0.933516 -1 6 [8,] 0.933523 -1 1 [9,] 0.933533 1 1 [10,] 0.933539 1 1 [11,] 0.933545 1 1 [12,] 0.933550 1 1 [13,] 0.933561 -1 1 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 17910 17911 287.9349 7.913250 -0.0008612 0.01364850 0.01364850 17911 17911 17912 287.9349 7.914770 -0.0008734 0.01361915 0.01361915 17912 17912 17913 287.9349 7.913377 -0.0008842 0.01362620 0.01362620 17913 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 17910 10.5 1.00 68.00 955.5 -1 7.919778 7.919422 17911 10.5 2.25 68.25 730.5 1 7.921257 7.920896 17912 10.5 6.00 69.00 15.5 -1 7.919890 7.919525 vuvsigpdprcorr 17910 7.913778 17911 7.915264 17912 7.913891 [1] 0.9348602 0.9348882 0.9349155 [,1] [,2] [,3] [1,] 0.934854 -1 1 [2,] 0.934860 -1 1 [3,] 0.934866 -1 1 [4,] 0.934872 -1 1 [5,] 0.934882 1 1 [6,] 0.934888 1 1 [7,] 0.934894 1 1 [8,] 0.934900 1 6 [9,] 0.934909 -1 6 [10,] 0.934915 -1 6 [11,] 0.934921 -1 6 [12,] 0.934928 -1 6 [13,] 0.934938 1 6 [1] "JOGAVES DOES NOT MATCH" [1] "MASKING 20 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 04:26:32 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 6208549.808832 SECONDS" [1] "Tue May 13 04:26:32 PM MDT 2025 done recreating mr o2diffs" [1] "Removed 3 medium-rate record(s) with accumulation errors" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) -205.915 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) -57.784 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) -57.246 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 23.006 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 51 [1] 79 [1] 131 [1] 131 [1] 131 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 1 287.4329 2.176658e+02 1078453.2 1 [2,] 2 287.4330 5.281125e+01 1078645.1 -1 [3,] 3 287.4330 -3.338184e+01 1078686.7 1 [4,] 82 287.4353 -7.352105e-02 1079193.1 -1 [5,] 83 287.4353 -1.919219e+02 1079196.5 1 [6,] 84 287.4353 -4.746922e+02 1078682.4 -1 [7,] 92 287.4356 -5.387443e+02 1078648.8 -1 [8,] 93 287.4356 -5.340897e+02 1079227.4 1 [9,] 94 287.4377 7.978986e+00 1074618.7 1 [10,] 95 287.4377 1.560542e+01 1074714.1 -1 [11,] 171 287.4395 -4.777163e+02 1075034.5 -1 [12,] 239 287.4413 -2.448227e+02 1075475.5 -1 [13,] 241 287.4413 -5.056375e+01 1075681.5 -1 [14,] 309 287.4432 -2.442676e+02 1075701.0 -1 [15,] 379 287.4451 -1.840653e+02 1075998.3 -1 [16,] 557 287.4500 -4.792284e+02 1076647.5 -1 [17,] 619 287.4517 -2.372178e+02 1077058.2 -1 [18,] 875 287.4586 -3.152182e+02 1076080.6 -1 [19,] 939 287.4605 -1.928880e+02 1075896.6 -1 [20,] 1309 287.4708 -4.908717e+02 1070911.7 -1 [21,] 1433 287.4742 -4.096808e+01 1067521.0 -1 [22,] 2404 287.5013 -2.960208e+02 1025137.5 1 [23,] 2405 287.5014 -2.752495e+02 1024712.0 -1 [24,] 2406 287.5014 -2.264754e+02 1024902.2 1 [25,] 2422 287.5019 -2.542314e+02 1023875.6 1 [26,] 2423 287.5019 -2.129583e+02 1023553.0 -1 [27,] 2424 287.5019 -1.865011e+02 1023655.1 1 [28,] 2585 287.5064 -2.162404e+02 1013079.9 -1 [29,] 2591 287.5066 -5.093318e+02 1012552.7 -1 [30,] 2653 287.5083 -9.350563e+01 1011449.7 -1 [31,] 4091 287.5486 -1.901994e+02 1024110.8 -1 [32,] 4157 287.5504 -1.794869e+02 1021776.9 -1 [33,] 4159 287.5505 -5.232206e+02 1021401.5 -1 [34,] 5441 287.5863 -2.248941e+02 1017820.9 -1 [35,] 5447 287.5865 -4.627920e+02 1017290.4 -1 [36,] 5569 287.5899 -3.642045e+02 1011573.8 -1 [37,] 7147 287.6340 -1.881582e+02 1003304.8 -1 [38,] 7213 287.6358 -3.655100e+02 1002768.3 -1 [39,] 8765 287.6791 -2.078596e+02 998611.1 -1 [40,] 8771 287.6793 -4.506066e+02 998200.6 -1 [41,] 8833 287.6810 -1.886813e+02 996398.1 -1 [42,] 9965 287.7126 -2.256229e+02 988445.3 -1 [43,] 10033 287.7145 -4.597989e+02 989886.3 -1 [44,] 10095 287.7162 -4.444742e+02 992158.0 -1 [45,] 11047 287.7429 -2.486913e+02 995731.2 -1 [46,] 11053 287.7431 -5.260695e+02 995676.8 -1 [47,] 11113 287.7448 -5.599944e+02 997097.4 -1 [48,] 11114 287.7448 -3.397367e+02 997676.1 1 [49,] 11115 287.7448 -9.429328e+01 997607.8 -1 [50,] 12341 287.7791 -2.176076e+02 978841.3 -1 [51,] 12405 287.7809 -1.381466e+01 976303.8 -1 [52,] 12406 287.7809 -2.457026e+02 976285.7 1 [53,] 12407 287.7810 -5.012053e+02 975756.5 -1 [54,] 13701 287.8173 -2.347587e+02 985764.6 -1 [55,] 13767 287.8191 -5.570660e+02 987973.0 -1 [56,] 13768 287.8191 -3.302138e+02 988559.6 1 [57,] 13769 287.8191 -1.017508e+02 988507.0 -1 [58,] 13831 287.8209 -3.584932e+02 990668.9 -1 [59,] 13893 287.8226 -7.117645e+01 992878.6 -1 [60,] 14536 287.8406 -2.438332e+02 1018743.5 1 [61,] 14537 287.8407 -2.559886e+02 1018326.0 -1 [62,] 14538 287.8408 -2.554761e+02 1018542.8 1 [63,] 14585 287.8421 -2.438512e+02 1016059.4 -1 [64,] 14622 287.8431 -1.865594e+01 1013749.6 1 [65,] 14623 287.8431 -1.761903e+01 1013619.3 -1 [66,] 14624 287.8432 -5.959084e+00 1013522.5 1 [67,] 14625 287.8432 -7.886285e+00 1013417.6 -1 [68,] 14638 287.8436 1.141640e+01 1012438.2 1 [69,] 14639 287.8436 -2.107691e+00 1012312.2 -1 [70,] 14640 287.8436 -7.380786e+00 1012211.6 1 [71,] 14651 287.8439 -6.475655e+00 1011303.0 -1 [72,] 14652 287.8439 -2.251592e+02 1011221.8 1 [73,] 14653 287.8440 -4.719169e+02 1010650.7 -1 [74,] 14655 287.8440 -5.392893e+02 1010425.3 -1 [75,] 14662 287.8442 -5.600759e+02 1010396.2 1 [76,] 14663 287.8442 -5.618962e+02 1009733.6 -1 [77,] 14664 287.8443 -5.624486e+02 1010183.5 1 [78,] 14668 287.8444 -5.473276e+02 1009884.5 1 [79,] 14669 287.8444 -5.673251e+02 1009207.0 -1 [80,] 14670 287.8444 -5.522712e+02 1009653.4 1 [81,] 14678 287.8447 -5.251881e+02 1009000.1 1 [82,] 14679 287.8447 -5.392962e+02 1008357.5 -1 [83,] 14680 287.8447 -5.447953e+02 1008794.4 1 [84,] 14681 287.8447 -5.497819e+02 1008143.0 -1 [85,] 14688 287.8449 -5.830526e+02 1008180.2 1 [86,] 14689 287.8450 -5.554795e+02 1007483.0 -1 [87,] 14690 287.8450 -5.488220e+02 1007923.5 1 [88,] 14691 287.8450 -5.611320e+02 1007231.4 -1 [89,] 14692 287.8451 -5.584913e+02 1007705.9 1 [90,] 14698 287.8452 -5.554458e+02 1007245.7 1 [91,] 14699 287.8452 -5.716769e+02 1006564.1 -1 [92,] 14700 287.8453 -5.604563e+02 1007027.6 1 [93,] 14701 287.8453 -5.525976e+02 1006353.4 -1 [94,] 14702 287.8453 -5.534650e+02 1006804.2 1 [95,] 14703 287.8454 -5.575589e+02 1006151.0 -1 [96,] 14708 287.8455 -5.626525e+02 1006279.8 1 [97,] 14709 287.8455 -5.449361e+02 1005627.3 -1 [98,] 14710 287.8455 -5.407084e+02 1006076.9 1 [99,] 14738 287.8463 -2.885771e+02 1003623.3 1 [100,] 14739 287.8464 -2.681319e+02 1003235.3 -1 [101,] 14740 287.8464 -2.563414e+02 1003396.5 1 [102,] 14750 287.8467 -2.862307e+02 1002561.1 1 [103,] 14751 287.8467 -2.708269e+02 1002171.5 -1 [104,] 14752 287.8467 -2.580505e+02 1002336.0 1 [105,] 15805 287.8762 -1.788644e+02 979798.4 -1 [106,] 15811 287.8764 -5.234791e+02 979243.6 -1 [107,] 15871 287.8779 -1.482283e+02 977701.9 -1 [108,] 16739 287.9021 -2.726775e+02 994372.8 -1 [109,] 16745 287.9023 -4.710673e+01 994700.6 -1 [110,] 16803 287.9039 -4.826602e+02 995201.1 -1 [111,] 17646 287.9275 -1.962092e+02 977377.0 1 [112,] 17647 287.9276 -3.228665e+02 977203.5 -1 [113,] 17648 287.9276 -3.382025e+02 977648.9 1 [114,] 17649 287.9276 -2.222494e+02 977384.4 -1 [115,] 17685 287.9286 -4.675777e+02 976021.6 -1 [116,] 17686 287.9287 -1.198814e+03 976481.7 1 [117,] 17687 287.9287 -2.052696e+03 974395.9 -1 [118,] 17688 287.9287 -2.674345e+03 976419.3 1 [119,] 17689 287.9287 -2.914099e+03 973535.2 -1 [120,] 17690 287.9288 -2.733753e+03 976370.8 1 [121,] 17691 287.9288 -2.326021e+03 974102.8 -1 [122,] 17692 287.9288 -1.872246e+03 976346.6 1 [123,] 17693 287.9288 -1.423777e+03 974941.2 -1 [124,] 17694 287.9289 -1.025817e+03 976289.4 1 [125,] 17695 287.9289 -7.011592e+02 975598.8 -1 [126,] 17697 287.9290 -1.907005e+02 976052.4 -1 [127,] 17699 287.9290 1.295049e+02 976318.0 -1 [128,] 17811 287.9322 -1.747104e+02 974320.3 -1 [129,] 18447 287.9502 -5.124447e+02 981656.7 -1 [130,] 18569 287.9536 -1.857724e+01 982025.8 -1 [131,] 18631 287.9553 -5.078561e+02 981361.5 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 1828 287.4852 2.898150e+02 [2,] 5051 287.5754 9.709995e+04 [3,] 5400 287.5852 9.680996e+07 [4,] 15171 287.8585 2.921010e+02 [5,] 16210 287.8872 2.926240e+02 [6,] 17290 287.9176 9.705976e+08 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) -205.915 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) -39.76 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) -39.929 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 23.006 PER MEG" [1] 378.7279 408.7724 393.4143 404.9610 398.4837 [1] -552.8011 -698.1823 -583.3931 -714.4340 -707.7823 [1] "Nominal linear calibrations:" [1] "co2scl = 1.059 co2off = -5.34 o2scla = -0.054 o2offa = -123.9" [1] "(dV/V)/(dXO2/XO2) = -3.854" [1] "(dV/V)/d(O2/N2) = -3.047" [1] "Finding cal and sample periods" [1] "Median Cal: 2.43 minutes" [1] "Average Cal: 2.37 minutes" [1] "Shortest Cal: 0.4 minutes" [1] "Longest Cal: 5 minutes" [1] "Removed 3 calibration period(s) with less than 30 seconds of data" [1] "at: 2" [1] "at: 12" [1] "at: 67" [1] "Reading in aircraft data" [1] "Reading /scr/raf/stephens/HUMERGE/ATOM3/MMS/MMS-1HZ_DC8_20171014_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 17 items Read 17 items Read 1 item Read 1 item Read 18 items Read 691668 items [1] "Reading /scr/raf/stephens/HUMERGE/ATOM3/MMS/MMS-20Hz_DC8_20171014_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 25 items Read 25 items Read 1 item Read 1 item Read 26 items Read 19998602 items [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.00259" [1] "HS CO2 vs. PACAB: m = -0.00248, r^2 = 0.13" [1] "LS CO2 vs. PACAB: m = -0.00271, r^2 = 0.14" [1] "HS+LS LIH2O vs. PACAB: m = 1.66e-06" [1] "HS LIH2O vs. PACAB: m = -2.49e-06, r^2 = 0" [1] "LS LIH2O vs. PACAB: m = 5.81e-06, r^2 = 0.01" [1] "HS+LS CO2 vs. LIH2O: m = 40.4" [1] "HS CO2 vs. LIH2O: m = 66.2, r^2 = 0.63" [1] "LS CO2 vs. LIH2O: m = 14.5, r^2 = 0.02" [1] "APCO2 vs. PACAB: m = -0.0259, r^2 = 0.46" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 0.0102" [1] "HS O2 vs. PACAB: m = 0.00157, r^2 = 0" [1] "LS O2 vs. PACAB: m = 0.0189, r^2 = 0.07" [1] "HS+LS O2 vs. LIH2O: m = 6.17" [1] "HS O2 vs. LIH2O: m = -20.4, r^2 = 0" [1] "LS O2 vs. LIH2O: m = 32.7, r^2 = 0" [1] "HS+LS O2 vs. PAO2: m = -0.15" [1] "HS O2 vs. PAO2: m = 1.04, r^2 = 0.22" [1] "LS O2 vs. PAO2: m = -1.34, r^2 = 0.07" [1] "HS+LS O2 vs. TPBOX: m = 0.489" [1] "HS O2 vs. TPBOX: m = 0.206, r^2 = 0.06" [1] "LS O2 vs. TPBOX: m = 0.772, r^2 = 0.12" [1] "APO vs. PACAB: m = 0.44, r^2 = 0.46" [1] "APO vs. PAO2: m = 19.2, r^2 = 0.07" [1] "APO vs. TPBOX: m = -7.66, r^2 = 0.1" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = -0.316, r^2 = 0.1" [1] "LS CO2 vs. LiCor Cell P: m = -0.563, r^2 = 0.21" [1] "HS CO2 vs. CO2 Vol P: m = 0.543, r^2 = 0.4" [1] "LS CO2 vs. CO2 Vol P: m = 0.616, r^2 = 0.45" [1] "HS CO2 vs. SLOPE: m = -0.629, r^2 = 0.1" [1] "LS CO2 vs. SLOPE: m = -1.82, r^2 = 0.37" [1] "HS O2 vs. O2 Vol P: m = -0.11, r^2 = 0" [1] "LS O2 vs. O2 Vol P: m = -1.81, r^2 = 0.1" [1] "HS O2 vs. O2 Cell T: m = -0.0383, r^2 = 0" [1] "LS O2 vs. O2 Cell T: m = 0.714, r^2 = 0.06" [1] "HS O2 vs. CO2 Vol P: m = 0.157, r^2 = 0" [1] "LS O2 vs. CO2 Vol P: m = -3.81, r^2 = 0.15" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = -0.291, r^2 = 0.02" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = -3.08, r^2 = 0.12" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = 0.157, r^2 = 0" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -3.81, r^2 = 0.15" [1] "HS O2 vs. LIH2O: m = 79.1, r^2 = 0.02" [1] "LS O2 vs. LIH2O: m = 74, r^2 = 0" [1] "HS O2 vs. SLOPE: m = 0.0897, r^2 = 0.04" [1] "LS O2 vs. SLOPE: m = -0.465, r^2 = 0.26" [1] "HS CO2 vs. Time: m = 10.414, r^2 = 0.87" [1] "LS CO2 vs. Time: m = 10.571, r^2 = 0.88" [1] "HS CO2 vs. Cylinder T: m = 0.079, r^2 = 0" [1] "LS CO2 vs. Cylinder T: m = 0.064, r^2 = 0" [1] "HS CO2 vs. Regulator T: m = -0.014, r^2 = 0" [1] "LS CO2 vs. Regulator T: m = 0.065, r^2 = 0.006" [1] "HS CO2 vs. Ref. Volumes T: m = -0.394, r^2 = 0.39" [1] "LS CO2 vs. Ref. Volumes T: m = -0.53, r^2 = 0.562" [1] "HS CO2 vs. Manifold T: m = -0.125, r^2 = 0.36" [1] "LS CO2 vs. Manifold T: m = -0.128, r^2 = 0.358" [1] "HS CO2 vs. Pump Box T: m = -0.084, r^2 = 0.16" [1] "LS CO2 vs. Pump Box T: m = -0.098, r^2 = 0.179" [1] "HS O2 vs. Cylinder T: m = 0.551, r^2 = 0" [1] "LS O2 vs. Cylinder T: m = -8.029, r^2 = 0.046" [1] "HS O2 vs. Regulator T: m = -0.104, r^2 = 0" [1] "LS O2 vs. Regulator T: m = 0.371, r^2 = 0.002" [1] "HS O2 vs. Ref. Volumes T: m = 0.518, r^2 = 0.02" [1] "LS O2 vs. Ref. Volumes T: m = 0.861, r^2 = 0.013" [1] "HS O2 vs. Manifold T: m = -0.219, r^2 = 0.03" [1] "LS O2 vs. Manifold T: m = 0.628, r^2 = 0.077" [1] "HS O2 vs. Pump Box T: m = -0.322, r^2 = 0.08" [1] "LS O2 vs. Pump Box T: m = 0.936, r^2 = 0.146" [1] "HS CO2 vs. WT P: m = -0.003, r^2 = 0.15" [1] "LS CO2 vs. WT P: m = -0.003, r^2 = 0.172" [1] "HS CO2 vs. SP P: m = -0.00245, r^2 = 0.14" [1] "HS CO2 vs. PACAB comb with SP P: m = -0.073, r^2 = 0.29" [1] "HS CO2 vs. SP P comb with PACAB: m = 0.07, r^2 = 0.29" [1] "LS CO2 vs. SP P: m = -0.00296, r^2 = 0.19" [1] "LS CO2 vs. PACAB comb with SP P: m = 0.058, r^2 = 0.38" [1] "LS CO2 vs. SP P comb with PACAB: m = -0.06, r^2 = 0.38" [1] "HS CO2 vs. WT FL: m = -0.019, r^2 = 0.01" [1] "LS CO2 vs. WT FL: m = -0.065, r^2 = 0.061" [1] "HS CO2 vs. SP FL: m = 0.054, r^2 = 0.14" [1] "LS CO2 vs. SP FL: m = 0.051, r^2 = 0.114" [1] "HS O2 vs. SLPDIFF: m = -0.004, r^2 = 0" [1] "LS O2 vs. SLPDIFF: m = 0.938, r^2 = 0.519" [1] "HS O2 vs. WT P: m = 0, r^2 = 0" [1] "LS O2 vs. WT P: m = 0.022, r^2 = 0.081" [1] "HS O2 vs. SP P: m = 0, r^2 = 0" [1] "LS O2 vs. SP P: m = 0.025, r^2 = 0.099" [1] "HS O2 vs. WT FL: m = 0.61, r^2 = 0.2" [1] "LS O2 vs. WT FL: m = 0.005, r^2 = 0" [1] "HS O2 vs. SP FL: m = 0.222, r^2 = 0.07" [1] "LS O2 vs. SP FL: m = -0.409, r^2 = 0.066" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): 58.21, 10.8, 55.45, 55.2, 55.51, 55.31" [1] "Empirical LP O2 lag flow(s): 96.2, 102.3, 102.1, 101.8, 101.7, 101.4" [1] "Empirical LP CO2 lag time(s): 48.71, 83.12, 50.62, 48.03, 48.25, 50.47" [1] "Empirical LP CO2 lag flow(s): 96.2, 102.3, 102.1, 101.8, 101.7, 101.4" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.42" [1] "Median all HS CO2 SD = 0.41" [1] "Median all LS CO2 SD = 0.42" [1] "Median all LT CO2 SD = 0.43" [1] "Median all WT CO2 SD = 0.39" [1] "Median all HS or LS CO2 SD = 0.42" [1] "Median all cal O2 SD = 1.57" [1] "Median all HS O2 SD = 1.51" [1] "Median all LS O2 SD = 1.59" [1] "Median all LT O2 SD = 1.21" [1] "Median all WT O2 SD = 1.45" [1] "Median all HS or LS O2 SD = 1.53" [1] "Median all cal CO2 Slope = 0.03" [1] "Median all HS CO2 Slope = 0" [1] "Median all LS CO2 Slope = 0.06" [1] "Median all LT CO2 Slope = 0.09" [1] "Median all WT CO2 Slope = -0.01" [1] "Median all HS or LS CO2 Slope = 0.05" [1] "Median all cal O2 Slope = 0.02" [1] "Median all HS O2 Slope = 0.22" [1] "Median all LS O2 Slope = -0.71" [1] "Median all LT O2 Slope = 0.01" [1] "Median all WT O2 Slope = -0.06" [1] "Median all HS or LS O2 Slope = -0.29" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 3.43 per meg" [1] "Initial O2 Calibration Offset = -6.79 per meg" [1] "SD of O2 Calibration (post-takeoff) = 1.73 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = -7.5 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = -5.95 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using ATom2 inlet volumes" [1] "before any lag: 37404.55 82548.03" [1] "Time lag adjustments = 17 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 61 at 102.5 sccm" [1] "Median O2 delay + tlagff = 61.8 at 102.5 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 59.9 at 102.5 sccm" [1] "Median O2 delay from 3-way + tlagff = 60.7 at 102.5 sccm" [1] "after calc and ff lag: 37332.91 82482.59" [1] "2025-05-13 16:27:39 MDT" [1] "Calculating 1-sec interpolated values" [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] 9.20119669 15.43011877 12.64341264 12.64341264 12.64341264 [6] 12.64341264 8.79077291 8.28600925 8.28600925 6.89158506 [11] -13.45828127 -14.24084088 -14.24084088 -10.54062281 -1.26284250 [16] -0.81211546 -0.81211546 0.22172887 10.72488075 16.35045564 [21] 16.35045564 16.49450937 16.63507121 8.01258321 -5.56513916 [26] -5.56513916 -9.77558566 NA NA NA [31] NA 6.99233946 9.08014858 9.08014858 9.08014858 [36] 8.25813946 8.25813946 8.25813946 6.16560674 -0.06156304 [41] -0.06156304 -0.06156304 -0.06156304 2.22005961 2.85098870 [46] 2.85098870 3.66721613 7.98035048 7.73238312 5.64571856 [51] 3.81401504 -2.60881213 -8.79307051 -8.79307051 -10.96316288 [56] 2.13463817 11.84372869 13.01948153 13.01948153 11.76986473 [61] 15.08938736 15.06930100 15.06930100 15.11586610 -4.97025540 [66] -4.88337222 -4.88337222 -4.88337222 11.03757868 11.03757868 [71] 11.03757868 11.33811011 4.17376541 4.38200838 4.87138836 [76] 6.03773306 5.70610243 5.70610243 5.70610243 5.11194363 [81] 8.74164153 6.99351864 5.55610843 4.94794160 9.29970844 [86] 9.29970844 14.68136860 17.64531778 20.26694395 17.11398019 [91] 13.74165014 13.98017006 20.62051809 21.47663317 21.47663317 [96] 21.95343641 19.45358033 16.60465572 16.60465572 21.24169848 [101] 23.38775468 24.36570064 22.03318727 21.35997990 23.88447807 [106] 30.03545320 29.43109403 28.69379126 28.36812117 21.30900289 [111] 21.30900289 20.83794455 19.76387160 14.44892592 14.44892592 [116] 14.44892592 14.44892592 2.92314904 2.91582753 2.88888654 [121] 2.83399885 27.55779621 27.55779621 27.55779621 27.55779621 [126] 17.54768979 17.54768979 18.22061573 20.43831867 13.09652081 [131] 12.28349423 12.28349423 7.38199403 8.89227390 11.26645607 [136] 11.26645607 11.26645607 11.74370495 15.22306084 15.29323144 [141] 17.21921279 19.61122522 16.83939908 16.83939908 16.83939908 [146] 16.83939908 15.84140183 18.39098710 21.46288379 21.46288379 [151] 28.07656710 21.47399873 9.95362529 9.95362529 -3.48068293 [156] -3.09714634 4.72166391 9.16448863 22.76742149 22.76742149 [161] 22.76742149 22.76742149 27.70216606 27.70216606 27.70216606 [166] 27.70216606 26.53950572 24.66169346 24.73719144 26.88406266 [171] 28.69877457 30.61546436 30.83661861 30.83661861 25.29254150 [176] 19.78806166 19.08445774 10.30826730 7.83927055 11.62064332 [181] 11.62064332 9.87496198 6.78369149 17.42515794 17.42515794 [186] 20.31160054 20.72790806 17.46025745 17.46162149 17.46513975 [191] 17.46521194 9.17661546 8.94819046 8.39573879 8.14090877 [196] 14.81823724 14.81823724 14.97610698 16.26340281 14.82422775 [201] 14.82422775 14.82422775 14.82422775 23.20714078 17.53870434 [206] 11.83218057 11.83218057 6.62155389 -0.32120728 -0.32120728 [211] -0.21019810 3.50996507 8.59210157 8.59210157 8.59210157 [216] 8.59210157 8.47615694 7.97722087 6.99607572 6.99607572 [221] 14.30556626 14.30556626 19.87255633 23.91177100 18.78475787 [226] 18.78475787 18.78475787 13.29164027 4.27684280 4.27684280 [231] 4.27684280 4.27684280 3.37793819 5.38418473 9.12587450 [236] 11.17111591 10.43506811 9.47553582 9.47553582 9.47553582 [241] 11.29664378 16.00045949 15.40500937 14.81122532 14.79218214 [246] 5.69822112 5.69553404 5.67150684 5.08201336 3.13914010 [251] 2.96180575 2.96180575 2.96180575 8.65304051 8.65304051 [256] 7.75617756 7.35222891 -5.19780886 -5.19780886 -5.56542865 [261] -6.05978496 3.69632793 3.69632793 4.92195683 7.58295871 [266] 3.06311728 0.41355577 0.41355577 0.60116173 7.98121421 [271] 17.85560990 17.85560990 17.85560990 18.51621189 20.74378098 [276] 20.74378098 20.74378098 20.74378098 22.50683949 22.49763914 [281] 21.48132189 20.38432104 12.45409009 11.56857262 11.24465386 [286] 10.17015579 7.59523151 7.41485125 7.24011825 7.06220952 [291] -2.64173067 -2.64173067 -2.64173067 -2.64173067 18.93707787 [296] 18.93707787 18.19628379 16.45410658 8.02705965 6.60769172 [301] 5.85670595 5.85670595 2.31934639 2.31934639 2.41431940 [306] 3.58914901 -0.90325883 -0.90325883 -0.90325883 -0.90325883 [311] -0.61055632 -5.37434679 -5.37434679 -5.37434679 -4.75197750 [316] -0.56625328 2.76953908 2.76953908 1.29058348 -0.13469948 [321] -2.25432790 -5.50495619 -0.11145144 -0.11145144 -0.11145144 [326] -0.11145144 -4.70743407 -6.78723835 -6.78723835 -6.78723835 [331] -4.32421980 0.73311625 0.73311625 0.73311625 0.73311625 [336] -1.68747387 -1.68747387 -1.68747387 -1.68747387 -12.30380020 [341] -10.44471657 -8.38416182 -6.29079454 3.04887892 3.04887892 [346] 3.04887892 3.04887892 0.73304227 -0.96923768 -0.96923768 [351] -1.01181464 -1.98411954 11.43252742 10.86525230 10.07840300 [356] 10.07840300 -1.66232726 -3.42124849 -3.27452399 -2.97360512 [361] -2.34594836 0.05794096 1.08226568 1.08226568 1.08226568 [366] 2.47321726 2.96828144 2.96828144 2.96828144 2.96828144 [371] 3.37902010 3.37902010 3.37902010 3.37902010 3.68636828 [376] 3.64290189 3.46572558 3.18249132 2.85118394 -1.21179922 [381] -1.78206131 -2.06326728 -2.06326728 -1.86056129 -1.80485661 [386] -1.80485661 -1.80485661 -1.80485661 2.42816415 2.79050562 [391] 2.91582908 2.91582908 1.18609986 -0.37025840 -1.51389422 [396] -1.51389422 -1.51389422 -0.31036717 -1.12436448 -3.19185092 [401] -3.19185092 -0.36338275 -0.36338275 -0.36338275 0.40820102 [406] 1.28803357 8.42435646 8.42453847 8.42466997 8.05339277 [411] 7.54300699 7.54300699 7.54300699 7.07546683 2.19704115 [416] 2.19704115 2.19703510 2.19696259 1.95189038 1.95181478 [421] 1.95174785 1.95167643 2.89966451 2.74519311 2.75347043 [426] 2.84203817 6.37264169 6.37271282 6.37283461 6.37296503 [431] 1.57390060 1.57390060 1.57390060 1.57390060 -8.69202068 [436] -11.91684765 -15.08543639 [1] 74.52269 75.25780 76.03513 77.02386 78.12902 79.55122 81.05534 [8] 83.73606 85.45840 88.20723 90.39438 92.88117 94.76406 96.69059 [15] 98.31306 100.25960 101.95018 103.80288 105.78925 107.70374 110.01130 [22] 112.62999 115.14103 118.39497 122.37439 125.10194 127.92285 129.76986 [29] 131.40724 133.35641 134.47983 135.05818 135.59771 136.38724 137.53883 [36] 138.45302 139.73858 141.26143 142.34894 144.16570 145.70473 147.94818 [43] 150.17833 153.11388 155.45708 157.70462 160.37888 163.86871 167.38832 [50] 171.44762 175.37688 179.58820 183.42114 187.34441 191.17909 194.65301 [57] 198.07900 201.52067 204.23050 207.10302 209.54000 211.65902 213.33823 [64] 215.07779 216.69674 218.04150 219.37966 220.48269 221.58379 222.07263 [71] 222.56156 223.04883 223.35402 223.61963 224.24383 225.36222 227.25112 [78] 229.75503 232.73189 235.53223 239.08359 242.08513 245.40084 248.47492 [85] 251.11587 253.87680 255.97830 258.29816 260.59067 263.07983 265.66848 [92] 268.30518 270.56813 272.53006 274.29868 276.30177 278.20896 279.99479 [99] 282.10473 284.91159 286.81957 288.55196 290.25936 291.88064 293.54951 [106] 295.15050 296.69479 298.10615 299.60899 300.90875 302.17946 303.50229 [113] 304.83928 306.09711 306.98384 307.89505 308.68306 309.70020 310.63532 [120] 311.71847 312.59280 313.35628 314.02697 314.66633 315.53504 316.29748 [127] 317.37029 318.51446 319.57457 321.14062 322.50297 324.06028 325.50191 [134] 326.59240 327.48168 328.23921 328.96924 329.58016 330.15091 330.78090 [141] 331.25661 331.84744 332.60793 333.60907 335.02956 336.27532 337.87161 [148] 339.45175 341.39187 343.70326 345.77777 347.81649 349.67423 351.36302 [155] 353.30292 355.20636 356.77963 357.96339 359.06306 359.90588 360.52280 [162] 361.02482 361.41000 361.79254 362.14427 362.59473 362.98030 363.54177 [169] 364.11771 364.79686 365.41620 366.16192 367.02003 368.28031 369.55090 [176] 370.81446 372.19368 373.65187 375.35737 377.19154 378.83881 381.01487 [183] 383.40733 385.26406 387.80678 390.08135 392.39362 394.57528 396.95122 [190] 399.14964 401.19946 403.21180 405.15050 407.03305 408.99237 410.61064 [197] 412.13975 413.61479 415.35302 416.65328 417.92233 419.23536 420.43768 [204] 421.77726 422.93897 423.99648 425.10217 426.18863 427.18873 428.20990 [211] 429.29673 430.42739 431.61257 432.80959 433.95572 435.20305 436.52170 [218] 437.72522 439.40207 440.80729 442.43392 444.07610 445.60322 447.54084 [225] 449.08388 450.59928 452.05653 453.32694 454.96250 456.28266 457.44371 [232] 458.63489 459.64719 460.78180 461.75193 462.85137 463.68364 464.82274 [239] 465.96598 467.00591 468.11354 469.33760 470.48366 471.60158 472.89245 [246] 474.18232 475.39023 476.57228 477.77089 478.71978 479.62698 480.53185 [253] 481.63112 482.85996 484.15278 485.72850 487.38552 489.11533 490.56724 [260] 492.72822 494.60911 496.56518 498.11198 500.04444 501.75030 503.14674 [267] 504.53464 505.75946 506.78906 507.90648 508.79951 509.71400 510.51416 [274] 511.36176 511.98450 512.43433 512.84662 513.50358 513.89395 514.25214 [281] 514.60104 514.97765 515.31254 515.61654 515.72774 516.14398 516.51528 [288] 516.82252 517.12013 517.42316 517.93043 518.31061 518.90064 519.66359 [295] 520.44864 521.18137 521.77811 522.63558 523.70734 524.47863 525.33415 [302] 526.31395 527.36217 528.39096 529.97938 531.32850 532.76758 534.33815 [309] 535.59645 536.83723 538.17411 539.68476 541.13656 542.33384 543.97668 [316] 545.28358 546.68496 547.87350 549.06462 550.17993 551.41055 552.27305 [323] 553.47416 554.10300 554.56771 555.00517 555.43704 555.68113 555.83748 [330] 555.94099 556.03655 556.13277 556.31582 556.49257 556.67774 556.89686 [337] 557.10344 557.23739 557.52263 557.77369 558.10234 558.46659 558.83665 [344] 559.30654 559.80816 560.34777 560.94040 561.78172 562.54478 563.45383 [351] 564.36821 565.27044 566.09341 566.73379 567.71730 568.55551 569.51397 [358] 570.38112 571.18733 571.89875 572.75012 573.47140 574.15258 574.83892 [365] 575.52988 576.13438 576.63683 577.04494 577.38219 577.76023 578.01941 [372] 578.26362 578.58436 578.74145 578.85798 579.00209 579.14726 579.37932 [379] 579.65077 579.98717 580.45440 580.82790 581.33676 581.93180 582.46800 [386] 583.12180 583.78427 584.72187 585.65383 586.70596 587.77001 589.05041 [393] 590.37548 591.78138 593.18734 594.46626 595.87021 597.13328 598.16867 [400] 599.55464 600.64228 601.90128 602.74518 603.66435 604.47637 605.18015 [407] 605.76268 606.46220 606.96761 607.26948 607.42643 607.55429 607.59787 [414] 607.56300 607.40001 607.23318 606.98979 606.71111 606.41715 606.12659 [421] 605.86937 605.59490 605.46514 605.34157 605.34819 605.41904 605.68968 [428] 605.96305 606.43113 606.93238 607.51470 608.22336 608.84236 609.72031 [435] 610.65526 611.53801 612.59890 [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1710/AO2_DC8_20171014_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 153704 items [1] 7 3844 38426 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 271 271 271 271 271 271 [1] 52570 52580 52590 52600 52610 52620 [1] "2017-09-28 14:36:10 UTC" "2017-09-28 14:36:20 UTC" [3] "2017-09-28 14:36:30 UTC" "2017-09-28 14:36:40 UTC" [5] "2017-09-28 14:36:50 UTC" "2017-09-28 14:37:00 UTC" [1] NA NA NA NA NA NA [1] 33765 [1] "Average Date / Time for slice RF07 = 2017-10-14 16:52:03.68032026290894" [1] "sum(lsel) = 3247" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 12.428 821.054 [1] 12.428 821.054 [1] 178.946 987.572 [1] 8.571429e-03 9.999990e+05 [1] "highestmid = 724.967" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM3 RF07 APO_AO2 range = -382.56,-339.02" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1710/AO2_DC8_20171014_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 153704 items [1] 7 3844 38426 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 271 271 271 271 271 271 [1] 52570 52580 52590 52600 52610 52620 [1] "2017-09-28 14:36:10 UTC" "2017-09-28 14:36:20 UTC" [3] "2017-09-28 14:36:30 UTC" "2017-09-28 14:36:40 UTC" [5] "2017-09-28 14:36:50 UTC" "2017-09-28 14:37:00 UTC" [1] NA NA NA NA NA NA [1] 33774 [1] "Average Date / Time for slice RF07 = 2017-10-14 16:52:04.88608384132385" [1] "sum(lsel) = 3248" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 12.428 821.054 [1] 12.428 821.054 [1] 178.946 987.572 [1] 8.571429e-03 9.999990e+05 [1] "highestmid = 724.967" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM3 RF07 O2_AO2 range = -667.29,-616.31" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1710/AO2_DC8_20171014_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 153704 items [1] 7 3844 38426 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 271 271 271 271 271 271 [1] 52570 52580 52590 52600 52610 52620 [1] "2017-09-28 14:36:10 UTC" "2017-09-28 14:36:20 UTC" [3] "2017-09-28 14:36:30 UTC" "2017-09-28 14:36:40 UTC" [5] "2017-09-28 14:36:50 UTC" "2017-09-28 14:37:00 UTC" [1] NA NA NA NA NA NA [1] 34269 [1] "Average Date / Time for slice RF07 = 2017-10-14 16:52:04.71003365516663" [1] "sum(lsel) = 3259" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 12.428 821.054 [1] 12.428 821.054 [1] 178.946 987.572 [1] 8.571429e-03 9.999990e+05 [1] "highestmid = 724.967" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM3 RF07 CO2_AO2 range = 402.3,404.93" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 20 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 20 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 20 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 20 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 20 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 20 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 20 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 20 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 20 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 20 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 20 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 20 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 20 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 20 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 20 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"