[1] "2025-05-13 16:14:08 MDT" options [1,] "file" "171004a" [2,] "flight" "RF03" [3,] "project" "ATOM3" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "17" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "full" [48,] "o2caltype" "full" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "TRUE" [64,] "icartt" "lookup" [65,] "icarttrev" "1" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "171004a" [1] "Reading in flight and plotting intervals" Read 18 records [1] "Reading in /scr/raf/stephens/AO2DAT/171004a.mr" Read 13582 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.33 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.36 seconds" [1] "New JOGEST = 2.36 seconds" [1] "New VALVE SKIP = 25 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/171004a.hr" Read 54328 records [1] "HR FILE MATCHES" [1] "Converting hrdata statout" [1] "Tue May 13 04:14:09 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30767 description: HS CO2 = 378.73 O2 = -553.1" [1] "position 2 cylinder OK30768 description: LS CO2 = 408.77 O2 = -698.4" [1] "position 3 cylinder OK30772 description: LT CO2 = 393.42 O2 = -583.2" [1] "position 4 cylinder OK30766 description: WT CO2 = 404.53 O2 = -782.9" [1] "position 5 cylinder OK30769 description: LP CO2 = 404.95 O2 = -714.6" [1] 378.7261 408.7695 393.4150 404.5340 404.9532 [1] -553.1226 -698.4314 -583.2365 -782.9400 -714.6262 [1] "Nominal linear calibrations:" [1] "co2scl = 1.06 co2off = -6.45 o2scla = -0.055 o2offa = -134.4" [1] "(dV/V)/(dXO2/XO2) = -3.804" [1] "(dV/V)/d(O2/N2) = -3.008" [1] "Reading in very high resolution timeseries" Read 271640 records [1] 271640 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 04:14:09 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 04:14:11 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.008" [1] "o2scaleavenew_drelVdrelP = -3.804" [1] "median(o2scalenew) = -3.022" [1] "Empirical dV/V vs dP/P relationship =-4.217, r^2 =0.429, damping =1.108" [1] "Tue May 13 04:14:11 PM MDT 2025 done redoing corrections" [1] "NON-INTEGER NGAS IN JOGAVES AT:" [1] 1660 $icochar [1] "0" "0" "25:23:27" "17:58:09" "278.0067" [6] "277.749102" "277.785619" "277.817460" "277.850860" "277.870009" [11] "277.891608" "277.910089" "277.929016" "277.947720" "277.977112" [16] "277.993366" "278.029883" "24:03:00" $ecochar [1] "367" "17:58:09" "367" "25:23:27" "278.0077" [6] "277.785619" "277.817460" "277.850860" "277.870009" "277.891608" [11] "277.910089" "277.929016" "277.947720" "277.977112" "277.993366" [16] "278.029883" "278.058830" "24:13:00" $flag [1] "all" "LP" "LP" "flight" [5] "donotreporto2" "a" "b" "c" [9] "d" "e" "f" "g" [13] "h" "i" "j" "k" [17] "l" "MMS" $ico2 [1] 0.0000 0.0000 278.0580 277.7487 278.0067 277.7491 277.7856 277.8175 [9] 277.8509 277.8700 277.8916 277.9101 277.9290 277.9477 277.9771 277.9934 [17] 278.0299 278.0021 $eco2 [1] 367.0000 277.7487 367.0000 278.0580 278.0077 277.7856 277.8175 277.8509 [9] 277.8700 277.8916 277.9101 277.9290 277.9477 277.9771 277.9934 278.0299 [17] 278.0588 278.0090 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 1659 1659 277.7487 7.993104 -0.00087015 0.00732035 0.00732035 1659 1660 1660 277.7487 7.994391 -0.00101490 0.00734830 0.00734830 1660 1661 1661 277.7487 7.992471 -0.00116860 0.00736460 0.00736460 1661 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 1659 10.5 6.00 20.00 3970.50 -1 7.996677 7.996325 1660 10.5 2.25 20.75 1001.75 1 7.998048 7.997637 1661 10.5 1.00 21.00 25.50 -1 7.996196 7.995723 vuvsigpdprcorr 1659 7.993364 1660 7.994664 1661 7.992744 [1] 0.7486918 0.7487183 0.7487456 [,1] [,2] [,3] [1,] 0.748703 -1 6 [2,] 0.748712 1 6 [3,] 0.748718 1 1 [4,] 0.748724 1 1 [5,] 0.748730 1 1 [6,] 0.748740 -1 1 [7,] 0.748745 -1 1 [8,] 0.748751 -1 1 [9,] 0.748757 -1 1 [10,] 0.748767 1 1 [11,] 0.748772 1 1 [12,] 0.748778 1 1 [13,] 0.748784 1 1 [1] "NON-INTEGER NGASNUM IN JOGAVES AT:" [1] 1660 $icochar [1] "0" "0" "25:23:27" "17:58:09" "278.0067" [6] "277.749102" "277.785619" "277.817460" "277.850860" "277.870009" [11] "277.891608" "277.910089" "277.929016" "277.947720" "277.977112" [16] "277.993366" "278.029883" "24:03:00" $ecochar [1] "367" "17:58:09" "367" "25:23:27" "278.0077" [6] "277.785619" "277.817460" "277.850860" "277.870009" "277.891608" [11] "277.910089" "277.929016" "277.947720" "277.977112" "277.993366" [16] "278.029883" "278.058830" "24:13:00" $flag [1] "all" "LP" "LP" "flight" [5] "donotreporto2" "a" "b" "c" [9] "d" "e" "f" "g" [13] "h" "i" "j" "k" [17] "l" "MMS" $ico2 [1] 0.0000 0.0000 278.0580 277.7487 278.0067 277.7491 277.7856 277.8175 [9] 277.8509 277.8700 277.8916 277.9101 277.9290 277.9477 277.9771 277.9934 [17] 278.0299 278.0021 $eco2 [1] 367.0000 277.7487 367.0000 278.0580 278.0077 277.7856 277.8175 277.8509 [9] 277.8700 277.8916 277.9101 277.9290 277.9477 277.9771 277.9934 278.0299 [17] 278.0588 278.0090 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 1659 1659 277.7487 7.993104 -0.00087015 0.00732035 0.00732035 1659 1660 1660 277.7487 7.994391 -0.00101490 0.00734830 0.00734830 1660 1661 1661 277.7487 7.992471 -0.00116860 0.00736460 0.00736460 1661 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 1659 10.5 6.00 20.00 3970.50 -1 7.996677 7.996325 1660 10.5 2.25 20.75 1001.75 1 7.998048 7.997637 1661 10.5 1.00 21.00 25.50 -1 7.996196 7.995723 vuvsigpdprcorr 1659 7.993364 1660 7.994664 1661 7.992744 [1] 0.7486918 0.7487183 0.7487456 [,1] [,2] [,3] [1,] 0.748703 -1 6 [2,] 0.748712 1 6 [3,] 0.748718 1 1 [4,] 0.748724 1 1 [5,] 0.748730 1 1 [6,] 0.748740 -1 1 [7,] 0.748745 -1 1 [8,] 0.748751 -1 1 [9,] 0.748757 -1 1 [10,] 0.748767 1 1 [11,] 0.748772 1 1 [12,] 0.748778 1 1 [13,] 0.748784 1 1 [1] "JOGAVES DOES NOT MATCH" [1] "MASKING 20 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 04:14:48 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 17995184.962272 SECONDS" [1] "Tue May 13 04:14:48 PM MDT 2025 done recreating mr o2diffs" [1] "Removed 1 medium-rate record(s) with accumulation errors" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) -134.27 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) -32.84 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) -32.665 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 28.89 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 9 [1] 18 [1] 66 [1] 66 [1] 69 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 1 277.7035 164.61408 1041135.3 1 [2,] 2 277.7036 -186.98707 1041149.3 -1 [3,] 3 277.7036 -295.03872 1041424.7 1 [4,] 6 277.7037 -51.73775 1041373.4 -1 [5,] 68 277.7055 -10.89190 1041429.5 -1 [6,] 69 277.7055 -316.42159 1041442.5 1 [7,] 70 277.7055 -628.03934 1040780.6 -1 [8,] 132 277.7072 -370.01736 1041023.5 -1 [9,] 196 277.7090 -509.94443 1040835.2 -1 [10,] 258 277.7106 -382.41103 1040894.6 -1 [11,] 384 277.7141 -489.47692 1040294.8 -1 [12,] 448 277.7158 -291.27355 1040276.9 -1 [13,] 642 277.7211 -656.75224 1038918.0 -1 [14,] 706 277.7228 -229.51273 1038789.2 -1 [15,] 834 277.7263 -192.54639 1037287.0 -1 [16,] 1022 277.7315 -572.08242 1034306.9 -1 [17,] 1148 277.7349 -295.70192 1032956.4 -1 [18,] 1278 277.7385 -673.08089 1029783.2 -1 [19,] 1340 277.7401 -379.97887 1027239.3 -1 [20,] 1439 277.7428 -20.34359 1022072.1 1 [21,] 1440 277.7429 -14.56704 1021951.6 -1 [22,] 1441 277.7429 22.93957 1021860.1 1 [23,] 1466 277.7436 -118.04761 1020273.0 -1 [24,] 1544 277.7457 70.21879 1015830.3 -1 [25,] 1545 277.7457 -467.33634 1015992.3 1 [26,] 1550 277.7457 -470.80497 1015509.6 -1 [27,] 2762 277.7790 -469.28705 963781.9 -1 [28,] 2832 277.7809 -730.80697 963216.4 -1 [29,] 4336 277.8220 -521.32583 996889.9 -1 [30,] 4342 277.8222 -737.37155 996616.5 -1 [31,] 4404 277.8239 -372.03633 996646.8 -1 [32,] 4468 277.8256 -567.93524 996580.3 -1 [33,] 4528 277.8273 -608.86845 996962.2 -1 [34,] 4529 277.8273 -391.14400 997580.8 1 [35,] 4530 277.8273 -124.10736 997479.2 -1 [36,] 5334 277.8493 -470.05139 999390.8 -1 [37,] 5340 277.8495 -729.88475 999107.3 -1 [38,] 5404 277.8513 -254.30563 999248.7 -1 [39,] 6770 277.8886 -444.67839 997486.2 -1 [40,] 6776 277.8888 -240.28675 997661.2 -1 [41,] 6840 277.8905 -714.72396 996628.7 -1 [42,] 6904 277.8922 -53.98912 996427.5 -1 [43,] 8148 277.9263 -436.15228 1000317.3 -1 [44,] 8218 277.9282 -297.62260 1000531.5 -1 [45,] 8282 277.9300 -536.89101 999674.1 -1 [46,] 8978 277.9490 -498.46946 1000615.2 -1 [47,] 8984 277.9492 -242.34810 1001093.6 -1 [48,] 9046 277.9509 -589.56486 1003053.6 -1 [49,] 9108 277.9526 -672.34954 1005367.0 -1 [50,] 9109 277.9526 -345.99126 1006076.5 1 [51,] 9110 277.9526 -100.56974 1006009.8 -1 [52,] 9948 277.9755 -447.84496 1024507.4 -1 [53,] 9954 277.9757 -230.97586 1024699.1 -1 [54,] 10016 277.9774 -603.87919 1023776.0 -1 [55,] 11418 278.0158 -450.09616 1023966.0 -1 [56,] 11424 278.0159 -727.18706 1023590.5 -1 [57,] 11486 278.0176 -303.20854 1022898.9 -1 [58,] 11550 278.0194 -580.30738 1021212.4 -1 [59,] 11612 278.0211 -111.75652 1020133.9 -1 [60,] 12955 278.0579 -479.63241 1007912.9 1 [61,] 12956 278.0579 -538.78619 1007487.0 -1 [62,] 12957 278.0579 -571.29113 1008137.4 1 [63,] 12960 278.0580 -509.89001 1007729.5 -1 [64,] 12986 278.0587 -232.70038 1008919.4 -1 [65,] 12988 278.0588 -56.06371 1009192.3 -1 [66,] 13402 278.0700 -604.46030 1031603.1 -1 [67,] 13464 278.0717 -249.56568 1035267.3 -1 [68,] 13466 278.0717 -16.30020 1035604.3 -1 [69,] 13528 278.0734 -408.42655 1038442.7 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 6875 277.8915 9.133232e+04 [2,] 7059 277.8964 1.946193e+10 [3,] 11639 278.0218 1.005862e+04 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) -134.27 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) -28.525 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) -22.303 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 28.89 PER MEG" [1] 378.7261 408.7695 393.4150 404.5340 404.9532 [1] -553.1226 -698.4314 -583.2365 -782.9400 -714.6262 [1] "Nominal linear calibrations:" [1] "co2scl = 1.06 co2off = -6.41 o2scla = -0.055 o2offa = -134.3" [1] "(dV/V)/(dXO2/XO2) = -3.824" [1] "(dV/V)/d(O2/N2) = -3.023" [1] "Finding cal and sample periods" [1] "Median Cal: 2.44 minutes" [1] "Average Cal: 2.33 minutes" [1] "Shortest Cal: 0.08 minutes" [1] "Longest Cal: 5 minutes" [1] "Removed 3 calibration period(s) with less than 30 seconds of data" [1] "at: 18" [1] "at: 29" [1] "at: 40" [1] "Reading in aircraft data" [1] "Reading /scr/raf/stephens/HUMERGE/ATOM3/MMS/MMS-1HZ_DC8_20171004_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 17 items Read 17 items Read 1 item Read 1 item Read 18 items Read 480060 items [1] "Reading /scr/raf/stephens/HUMERGE/ATOM3/MMS/MMS-20Hz_DC8_20171004_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 25 items Read 25 items Read 1 item Read 1 item Read 26 items Read 13885170 items [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.00258" [1] "HS CO2 vs. PACAB: m = -0.00348, r^2 = 0.33" [1] "LS CO2 vs. PACAB: m = -0.00167, r^2 = 0.11" [1] "HS+LS LIH2O vs. PACAB: m = -3.39e-05" [1] "HS LIH2O vs. PACAB: m = -1.32e-05, r^2 = 0.14" [1] "LS LIH2O vs. PACAB: m = -5.45e-05, r^2 = 0.79" [1] "HS+LS CO2 vs. LIH2O: m = 69.1" [1] "HS CO2 vs. LIH2O: m = 122, r^2 = 0.46" [1] "LS CO2 vs. LIH2O: m = 16, r^2 = 0.03" [1] "APCO2 vs. PACAB: m = 0.0157, r^2 = 0.27" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 0.0196" [1] "HS O2 vs. PACAB: m = 0.0219, r^2 = 0.08" [1] "LS O2 vs. PACAB: m = 0.0172, r^2 = 0.04" [1] "HS+LS O2 vs. LIH2O: m = -522" [1] "HS O2 vs. LIH2O: m = -867, r^2 = 0.14" [1] "LS O2 vs. LIH2O: m = -178, r^2 = 0.02" [1] "HS+LS O2 vs. PAO2: m = -10.5" [1] "HS O2 vs. PAO2: m = -9.69, r^2 = 0.78" [1] "LS O2 vs. PAO2: m = -11.4, r^2 = 0.95" [1] "HS+LS O2 vs. TPBOX: m = 3.87" [1] "HS O2 vs. TPBOX: m = 4.11, r^2 = 0.72" [1] "LS O2 vs. TPBOX: m = 3.64, r^2 = 0.69" [1] "APO vs. PACAB: m = -0.264, r^2 = 0.27" [1] "APO vs. PAO2: m = -18.8, r^2 = 0.17" [1] "APO vs. TPBOX: m = 5.72, r^2 = 0.13" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 0.307, r^2 = 0.03" [1] "LS CO2 vs. LiCor Cell P: m = 0.281, r^2 = 0.03" [1] "HS CO2 vs. CO2 Vol P: m = 0.726, r^2 = 0.9" [1] "LS CO2 vs. CO2 Vol P: m = 0.68, r^2 = 0.74" [1] "HS CO2 vs. SLOPE: m = -0.357, r^2 = 0.02" [1] "LS CO2 vs. SLOPE: m = 0.241, r^2 = 0.01" [1] "HS O2 vs. O2 Vol P: m = -10, r^2 = 0.76" [1] "LS O2 vs. O2 Vol P: m = -10.3, r^2 = 0.81" [1] "HS O2 vs. O2 Cell T: m = 5.79, r^2 = 0.73" [1] "LS O2 vs. O2 Cell T: m = 5.97, r^2 = 0.74" [1] "HS O2 vs. CO2 Vol P: m = -11.8, r^2 = 0.69" [1] "LS O2 vs. CO2 Vol P: m = -12.4, r^2 = 0.82" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = 1.81, r^2 = 0.01" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = -0.143, r^2 = 0" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -11.8, r^2 = 0.69" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -12.4, r^2 = 0.82" [1] "HS O2 vs. LIH2O: m = -2360, r^2 = 0.51" [1] "LS O2 vs. LIH2O: m = -166, r^2 = 0.01" [1] "HS O2 vs. SLOPE: m = 0.361, r^2 = 0.01" [1] "LS O2 vs. SLOPE: m = -0.41, r^2 = 0.02" [1] "HS CO2 vs. Time: m = 18.012, r^2 = 0.84" [1] "LS CO2 vs. Time: m = 20.222, r^2 = 0.86" [1] "HS CO2 vs. Cylinder T: m = 2.623, r^2 = 0.36" [1] "LS CO2 vs. Cylinder T: m = 1.304, r^2 = 0.163" [1] "HS CO2 vs. Regulator T: m = -0.634, r^2 = 0.5" [1] "LS CO2 vs. Regulator T: m = -0.623, r^2 = 0.465" [1] "HS CO2 vs. Ref. Volumes T: m = -0.537, r^2 = 0.34" [1] "LS CO2 vs. Ref. Volumes T: m = -0.541, r^2 = 0.292" [1] "HS CO2 vs. Manifold T: m = -0.29, r^2 = 0.86" [1] "LS CO2 vs. Manifold T: m = -0.253, r^2 = 0.659" [1] "HS CO2 vs. Pump Box T: m = -0.254, r^2 = 0.86" [1] "LS CO2 vs. Pump Box T: m = -0.187, r^2 = 0.575" [1] "HS O2 vs. Cylinder T: m = -39.566, r^2 = 0.24" [1] "LS O2 vs. Cylinder T: m = -30.218, r^2 = 0.29" [1] "HS O2 vs. Regulator T: m = 10.92, r^2 = 0.43" [1] "LS O2 vs. Regulator T: m = 10.047, r^2 = 0.402" [1] "HS O2 vs. Ref. Volumes T: m = 10.765, r^2 = 0.4" [1] "LS O2 vs. Ref. Volumes T: m = 8.412, r^2 = 0.234" [1] "HS O2 vs. Manifold T: m = 5.034, r^2 = 0.76" [1] "LS O2 vs. Manifold T: m = 4.647, r^2 = 0.739" [1] "HS O2 vs. Pump Box T: m = 4.384, r^2 = 0.74" [1] "LS O2 vs. Pump Box T: m = 3.444, r^2 = 0.649" [1] "HS CO2 vs. WT P: m = -0.005, r^2 = 0.35" [1] "LS CO2 vs. WT P: m = -0.002, r^2 = 0.135" [1] "HS CO2 vs. SP P: m = -0.00313, r^2 = 0.29" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.061, r^2 = 0.39" [1] "HS CO2 vs. SP P comb with PACAB: m = -0.066, r^2 = 0.39" [1] "LS CO2 vs. SP P: m = -0.00121, r^2 = 0.08" [1] "LS CO2 vs. PACAB comb with SP P: m = -0.094, r^2 = 0.26" [1] "LS CO2 vs. SP P comb with PACAB: m = 0.089, r^2 = 0.26" [1] "HS CO2 vs. WT FL: m = -0.179, r^2 = 0.76" [1] "LS CO2 vs. WT FL: m = -0.19, r^2 = 0.71" [1] "HS CO2 vs. SP FL: m = -0.005, r^2 = 0" [1] "LS CO2 vs. SP FL: m = -0.013, r^2 = 0.006" [1] "HS O2 vs. SLPDIFF: m = 0.348, r^2 = 0.03" [1] "LS O2 vs. SLPDIFF: m = -0.282, r^2 = 0.009" [1] "HS O2 vs. WT P: m = 0.074, r^2 = 0.22" [1] "LS O2 vs. WT P: m = 0.044, r^2 = 0.142" [1] "HS O2 vs. SP P: m = 0.08, r^2 = 0.24" [1] "LS O2 vs. SP P: m = 0.044, r^2 = 0.14" [1] "HS O2 vs. WT FL: m = 3.198, r^2 = 0.71" [1] "LS O2 vs. WT FL: m = 3.235, r^2 = 0.683" [1] "HS O2 vs. SP FL: m = 0.467, r^2 = 0.01" [1] "LS O2 vs. SP FL: m = 0.148, r^2 = 0.002" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): 40.5, 69.6" [1] "Empirical LP O2 lag flow(s): 101.7, 93.3" [1] "Empirical LP CO2 lag time(s): 35.75, 43.77" [1] "Empirical LP CO2 lag flow(s): 101.7, 93.3" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.42" [1] "Median all HS CO2 SD = 0.38" [1] "Median all LS CO2 SD = 0.43" [1] "Median all LT CO2 SD = 0.42" [1] "Median all WT CO2 SD = 0.43" [1] "Median all HS or LS CO2 SD = 0.41" [1] "Median all cal O2 SD = 1.34" [1] "Median all HS O2 SD = 1.21" [1] "Median all LS O2 SD = 1.24" [1] "Median all LT O2 SD = 1.23" [1] "Median all WT O2 SD = 1.18" [1] "Median all HS or LS O2 SD = 1.21" [1] "Median all cal CO2 Slope = 0.06" [1] "Median all HS CO2 Slope = 0.06" [1] "Median all LS CO2 Slope = 0.12" [1] "Median all LT CO2 Slope = -0.09" [1] "Median all WT CO2 Slope = 0.09" [1] "Median all HS or LS CO2 Slope = 0.08" [1] "Median all cal O2 Slope = 0.12" [1] "Median all HS O2 Slope = 0.7" [1] "Median all LS O2 Slope = -0.45" [1] "Median all LT O2 Slope = -0.16" [1] "Median all WT O2 Slope = -0.33" [1] "Median all HS or LS O2 Slope = 0.39" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 6.99 per meg" [1] "Initial O2 Calibration Offset = -4.84 per meg" [1] "SD of O2 Calibration (post-takeoff) = 4.15 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = -8.89 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = -11.47 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using ATom2 inlet volumes" [1] "before any lag: 60786.63 92867.64" [1] "Time lag adjustments = 17 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 63.4 at 99 sccm" [1] "Median O2 delay + tlagff = 64.2 at 99 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 61.3 at 99 sccm" [1] "Median O2 delay from 3-way + tlagff = 62 at 99 sccm" [1] "after calc and ff lag: 60720.55 92800" [1] "2025-05-13 16:15:32 MDT" [1] "Calculating 1-sec interpolated values" [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] 1.55397446 1.55397446 8.89711082 9.38090575 9.38090575 [6] 9.38090575 1.46958726 1.45529450 0.89047808 1.44875904 [11] 6.02350632 10.81644440 4.53756245 2.22633011 5.48393286 [16] -2.05725238 2.75023589 -1.86222115 -2.49324546 -9.71673143 [21] -5.25531731 -8.22874440 -5.07238786 -3.03455106 -8.28662702 [26] -8.99194738 -8.62599004 -0.22521398 -1.25450478 -1.29505356 [31] -3.81995837 -4.17337893 1.54539349 1.54539349 -4.89623760 [36] 0.49037046 8.25914779 9.85832839 9.88739666 9.88739666 [41] 0.17688514 -0.71781159 -0.71781159 -0.12202202 -1.99760643 [46] 0.47383166 1.71011778 1.71011778 -4.31337535 -4.31337535 [51] -4.31337535 -4.31337535 -3.75370302 -2.08313152 -2.08313152 [56] -2.08313152 -1.75120963 8.96312682 8.96312682 8.26777070 [61] 7.70822062 4.92371286 4.07948204 4.10032792 7.27353308 [66] 3.28827136 0.09568819 0.84445698 0.84445698 6.85704000 [71] 7.57278834 6.09519379 1.33144678 -0.03579230 -5.79711305 [76] -8.15632364 -10.78081096 -2.55810162 10.17871097 11.96994652 [81] 14.31082739 14.31082739 8.94542524 8.21037639 8.21037639 [86] 8.21037639 9.25262144 6.03796124 -1.23453895 -3.60128721 [91] -3.60128721 -6.85747059 -6.66737668 -2.64808477 -2.64808477 [96] 3.79383014 4.79037607 4.78650748 4.55715159 -0.60875655 [101] 1.58227778 2.82157136 2.82157136 7.86504977 11.56339965 [106] 11.56339965 11.56339965 6.80016481 -1.69109726 -1.69109726 [111] -1.21318378 0.97955602 0.15472907 0.12401020 -2.15112320 [116] -2.15112320 -5.54251135 5.63886779 5.63886779 4.71321088 [121] 3.73561923 3.48117940 2.51041113 -2.31537080 0.15831871 [126] 3.96140933 5.41723363 3.97060895 1.86686316 14.91737643 [131] 15.23224723 11.08809865 5.50556368 -1.40445863 0.13615301 [136] 0.13615301 0.13615301 9.74957776 8.14221272 8.14221272 [141] 8.14221272 4.00868729 -0.82501764 -0.82501764 -0.69484653 [146] -0.22111767 -0.69977318 -0.68671085 -1.08303554 -1.50198991 [151] 9.09119804 11.05155361 11.61662607 11.61662607 -0.98134548 [156] -2.76981154 -3.24809224 -3.24732555 0.66466095 2.87842699 [161] 2.87842699 3.05072619 1.00440394 -6.10687882 -6.10687882 [166] -5.09327882 -3.24020562 11.30803825 11.30803825 11.29328132 [171] 11.02239743 -0.77769776 -1.79633185 -1.79633185 -1.79633185 [176] 5.54295644 5.54295644 5.54295644 5.54295644 4.21564250 [181] 3.54561673 3.54561673 2.09033840 0.25170656 -5.30418352 [186] -5.30418352 -4.20479506 -3.46081290 -3.21255782 -2.58009307 [191] -1.79391353 -1.69018316 0.35845559 0.64769354 1.25039140 [196] 1.35758472 -0.89160567 -1.29427246 -2.03736759 -2.03736759 [201] 1.67623735 7.20886440 5.17033081 5.17033081 5.17033081 [206] -7.37353946 -7.80379148 -7.87935270 -7.87935270 -7.18136698 [211] -5.41408732 -3.21633493 -2.57575327 -0.87594784 -0.75543895 [216] 1.70488124 3.47336803 4.27012225 4.88548670 5.20715155 [221] 5.46542770 7.27619885 8.54957905 6.40074642 6.27606449 [226] 6.27606449 10.25402288 9.30899846 8.31850816 8.31850816 [231] 14.13158447 13.69725590 12.21563644 11.28970888 4.49234385 [236] 3.22269250 3.29244094 4.98009173 2.76425245 0.19990668 [241] 0.19990668 0.03128417 -0.23951670 -3.54586513 -3.54586513 [246] -3.54586513 -6.17574388 -8.29637709 -8.92600620 -8.92600620 [251] -8.92600620 -1.44076920 0.99365031 2.95476093 2.95476093 [256] 8.93775127 9.14020473 8.98418670 8.58120064 7.98543772 [261] 6.57200886 6.57200886 6.57200886 7.63164958 3.96417516 [266] 3.96417516 3.96417516 3.96417516 -2.55938211 -6.26574943 [271] -7.74170527 -7.74170527 -10.00212467 -9.94107208 -9.43485406 [276] -8.52284372 -9.33663036 -9.41798674 -9.41798674 -7.75711375 [281] -0.03989296 0.34095702 0.34095702 0.34095702 -1.40943800 [286] -2.21200902 -2.22904579 -2.23039022 -2.23039022 -5.42893763 [291] -4.10362464 -2.92166826 -2.23701409 -4.27111394 -4.48643031 [296] -4.38597270 -3.88643627 -4.49235921 -5.21699992 -5.21699992 [301] -5.21699992 -3.35875862 7.89172229 7.89172229 7.89172229 [306] 7.89172229 5.81715950 3.67645837 3.67645837 3.67645837 [311] -7.46417746 -7.39230666 -7.23918069 -7.04430836 -6.50215140 [316] -2.71585525 -2.71585525 -3.49707766 -6.69464463 -4.89241406 [321] -4.89241406 -4.89241406 -4.89241406 2.12122713 4.69666533 [326] 4.69666533 4.69666533 5.76250326 3.65254218 3.08773600 [331] 3.06417598 0.38788574 -4.94881867 -9.49577172 -9.49577172 [336] -9.49577172 -11.58919789 -7.25182686 -7.25182686 -7.25182686 [341] -2.33851641 8.77887189 9.69993935 9.69993935 12.42719869 [346] 8.97875620 4.49311272 4.49311272 4.15809352 4.65655255 [351] 9.27529796 10.76726409 10.76726409 8.11142598 8.11142598 [356] 8.11142598 5.18805966 -5.50313059 -6.42457362 -6.42457362 [361] -6.42457362 -8.44870491 -9.00096690 -10.47241734 -11.09139598 [366] -6.16574067 1.25967405 1.25967405 1.28980499 1.38977797 [371] -6.67730357 -6.46401956 -6.41471933 -6.41471933 -5.91831731 [376] -5.91831731 -5.91831731 -6.06553789 -5.56565950 -5.64618328 [381] -5.64618328 -5.64618328 -3.17406316 -1.71094883 -1.71094883 [386] -1.79237705 -2.04939547 -10.63326467 -10.63326467 -10.63326467 [391] -10.63326467 -8.19081948 -8.19081948 -7.96380512 -7.71889522 [396] -6.82478174 -6.25761176 -6.25761176 -6.25761176 0.13256977 [401] 2.16462880 2.16879343 2.17334549 1.53985303 -7.53982855 [406] -6.89059549 -6.89059549 -6.89059549 0.74115591 0.74115591 [411] 0.74115591 0.74115591 2.79737482 2.94099023 3.07125963 [416] 3.07125963 5.92862377 8.97620862 8.97620862 8.97620862 [421] 8.97620862 6.11672640 6.00246589 5.31783873 4.68903199 [426] -7.82922628 [1] 71.22601 72.02310 72.94006 73.48145 73.84031 73.72790 73.51092 [8] 73.21592 72.88406 73.21208 73.89924 74.84871 76.98649 79.66067 [15] 81.08910 83.21729 85.29197 87.81708 90.20114 92.45924 95.21743 [22] 97.94148 100.80020 104.02548 106.92248 109.93300 113.00209 117.65353 [29] 121.21176 125.53722 129.79898 134.09350 138.36968 142.59510 146.73649 [36] 150.35779 153.87847 156.83892 159.65127 162.57040 165.31857 167.77126 [43] 169.97382 171.76135 173.08163 174.04431 175.22101 176.10387 177.14922 [50] 177.85473 178.75050 179.79021 181.19693 182.53020 184.02733 185.59730 [57] 187.51958 189.84816 192.14901 194.55065 196.60230 199.57685 201.93238 [64] 204.90583 208.17586 210.67182 213.95230 216.80257 220.07962 222.97867 [71] 225.56889 227.73520 229.80148 231.64062 233.24041 235.56162 237.72791 [78] 239.67563 241.47099 243.60297 245.51523 247.17779 248.74936 250.14314 [85] 251.13325 252.07274 253.06503 254.14536 255.10953 256.30024 257.48707 [92] 258.91214 260.32063 262.13140 264.40940 266.90701 269.43436 271.95185 [99] 274.68797 276.96134 279.00104 280.72579 282.32195 283.63043 285.02932 [106] 286.33377 287.85881 289.26813 290.75052 292.25403 293.49704 294.79357 [113] 296.14416 297.53530 298.74063 299.84315 300.95570 302.13358 303.30023 [120] 304.73002 306.02790 307.57381 308.89654 310.56065 312.28366 314.12659 [127] 316.10357 318.28887 320.62143 322.84357 325.15827 327.52815 329.41981 [134] 332.01090 333.71302 335.09862 336.30707 337.27836 338.09683 338.73108 [141] 339.26210 339.79063 340.33476 340.87896 341.24827 341.52459 341.68292 [148] 341.68641 341.58034 341.46822 341.63957 342.16423 343.05048 344.13848 [155] 345.48746 347.21349 348.91811 350.59026 352.06793 353.66352 355.40068 [162] 357.04602 358.53182 359.76069 361.18509 362.48172 364.15561 365.63425 [169] 366.96646 368.11470 369.33863 370.20641 370.88762 371.44800 371.88732 [176] 372.20955 372.53498 372.90607 373.34882 373.86955 374.48903 375.27671 [183] 376.03550 377.24467 378.70011 379.92614 381.78800 383.36120 385.17051 [190] 386.68533 388.12739 389.60248 390.82550 392.08499 393.32032 394.79305 [197] 396.22654 397.55774 398.70639 399.91296 401.21545 402.42817 403.67294 [204] 404.89348 406.19113 407.52125 408.85363 410.12577 411.40701 412.60667 [211] 413.88586 415.16249 416.46122 417.66750 418.88428 420.13651 421.34780 [218] 422.54211 423.77615 424.95588 426.17523 427.67943 428.81786 430.05158 [225] 431.30412 432.48033 433.70317 434.82396 435.98336 437.23082 438.39031 [232] 439.49895 440.73959 441.73673 442.91816 444.22629 445.38890 446.49609 [239] 447.60469 448.76469 450.03330 451.18998 452.31270 453.46277 454.60265 [246] 455.77596 457.13112 458.25001 459.40409 460.47404 461.62437 462.74745 [253] 463.83248 464.90277 465.96845 467.02560 468.09584 469.05739 470.17353 [260] 471.25640 472.34906 473.51926 474.68749 475.76384 476.86501 478.04870 [267] 479.08236 480.09659 481.20787 482.19554 483.33339 484.40032 485.63309 [274] 486.57554 487.81753 488.83953 489.97183 491.07263 492.09008 493.04652 [281] 494.11022 495.26916 496.32125 497.48022 498.57056 499.70883 500.82303 [288] 501.91185 502.97176 503.99909 505.03359 506.01390 506.97822 507.95075 [295] 508.90164 509.98724 510.86055 512.21073 513.24019 514.26777 515.34533 [302] 516.41841 517.40669 518.43507 519.53822 520.51971 521.52366 522.61540 [309] 523.62159 524.49909 525.75419 526.71980 527.72267 528.76489 529.66885 [316] 530.71235 531.64991 532.60410 533.60459 534.43831 535.57991 536.55926 [323] 537.58103 538.73077 539.75583 540.56217 541.78175 542.72467 543.75239 [330] 544.74871 545.76953 546.83059 547.81874 548.75774 549.74737 550.65783 [337] 551.58150 552.51069 553.50618 554.41044 555.34227 556.22254 557.13707 [344] 558.13152 559.02817 559.96919 560.86631 561.77158 562.80279 563.62784 [351] 564.31134 565.13495 565.80551 566.50016 567.13045 567.87759 568.54789 [358] 569.22388 569.93353 570.58786 571.28170 571.93821 572.66539 573.36938 [365] 574.11807 574.78283 575.48823 576.17876 576.87446 577.55711 578.23359 [372] 578.92029 579.65068 580.29322 581.16304 581.88110 582.51422 583.18228 [379] 583.88855 584.47824 585.06739 585.81311 586.46102 587.15148 587.79676 [386] 588.45554 589.03903 589.78514 590.51725 591.18726 591.91885 592.60862 [393] 593.25237 593.95208 594.60016 595.17979 595.92748 596.55269 597.15178 [400] 597.91486 598.54566 599.15503 599.79025 600.44983 601.06436 601.68290 [407] 602.19349 602.94026 603.56050 604.13215 604.66405 605.11596 605.57190 [414] 606.07112 606.53777 607.01954 607.47162 607.95313 608.36055 608.88868 [421] 609.39147 609.82673 610.32870 610.90895 611.44189 612.73120 [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Not reporting 36 O2 values from manual exclude period 278.0067 to 278.0077" [1] "Not reporting 36 APO values from manual exclude period 278.0067 to 278.0077" [1] "Not reporting 87 smoothed O2 values from manual exclude period 278.005976039006 to 278.006989806832" [1] "Not reporting 87 smoothed APO values from manual exclude period 278.005976039006 to 278.006989806832" [1] "Not reporting 87 smoothed O2 values from manual exclude period 278.005976039006 to 278.006989806832" [1] "Not reporting 87 smoothed APO values from manual exclude period 278.005976039006 to 278.006989806832" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1710/AO2_DC8_20171004_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 106680 items [1] 3 2668 26670 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 271 271 271 271 271 271 [1] 52570 52580 52590 52600 52610 52620 [1] "2017-09-28 14:36:10 UTC" "2017-09-28 14:36:20 UTC" [3] "2017-09-28 14:36:30 UTC" "2017-09-28 14:36:40 UTC" [5] "2017-09-28 14:36:50 UTC" "2017-09-28 14:37:00 UTC" [1] NA NA NA NA NA NA [1] 33789 [1] "Average Date / Time for slice RF03 = 2017-10-04 21:43:19.4633691310883" [1] "sum(lsel) = 2143" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -17.227 803.200 [1] -17.227 803.200 [1] 196.800 1017.227 [1] 8.571429e-03 9.999990e+05 [1] "highestmid = 697.629" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM3 RF03 APO_AO2 range = -346.22,-319.9" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1710/AO2_DC8_20171004_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 106680 items [1] 3 2668 26670 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 271 271 271 271 271 271 [1] 52570 52580 52590 52600 52610 52620 [1] "2017-09-28 14:36:10 UTC" "2017-09-28 14:36:20 UTC" [3] "2017-09-28 14:36:30 UTC" "2017-09-28 14:36:40 UTC" [5] "2017-09-28 14:36:50 UTC" "2017-09-28 14:37:00 UTC" [1] NA NA NA NA NA NA [1] 33799 [1] "Average Date / Time for slice RF03 = 2017-10-04 21:43:21.3712687492371" [1] "sum(lsel) = 2144" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -17.227 803.200 [1] -17.227 803.200 [1] 196.800 1017.227 [1] 8.571429e-03 9.999990e+05 [1] "highestmid = 697.629" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM3 RF03 O2_AO2 range = -637.25,-597.69" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1710/AO2_DC8_20171004_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 106680 items [1] 3 2668 26670 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 271 271 271 271 271 271 [1] 52570 52580 52590 52600 52610 52620 [1] "2017-09-28 14:36:10 UTC" "2017-09-28 14:36:20 UTC" [3] "2017-09-28 14:36:30 UTC" "2017-09-28 14:36:40 UTC" [5] "2017-09-28 14:36:50 UTC" "2017-09-28 14:37:00 UTC" [1] NA NA NA NA NA NA [1] 34284 [1] "Average Date / Time for slice RF03 = 2017-10-04 21:43:56.1013011932373" [1] "sum(lsel) = 2152" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -17.227 803.200 [1] -17.227 803.200 [1] 196.800 1017.227 [1] 8.571429e-03 9.999990e+05 [1] "highestmid = 697.629" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM3 RF03 CO2_AO2 range = 401.66,408.3" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 1 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"