[1] "2025-05-13 16:06:22 MDT" options [1,] "file" "170928a" [2,] "flight" "RF01" [3,] "project" "ATOM3" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "17" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "full" [48,] "o2caltype" "full" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "TRUE" [64,] "icartt" "lookup" [65,] "icarttrev" "1" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "170928a" [1] "Reading in flight and plotting intervals" Read 30 records [1] "Reading in /scr/raf/stephens/AO2DAT/170928a.mr" Read 18202 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.33 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.36 seconds" [1] "New JOGEST = 2.36 seconds" [1] "New VALVE SKIP = 25 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/170928a.hr" Read 72810 records [1] "HR FILE MATCHES" [1] "Converting hrdata statout" [1] "Tue May 13 04:06:22 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30767 description: HS CO2 = 378.72 O2 = -553.3" [1] "position 2 cylinder OK30768 description: LS CO2 = 408.77 O2 = -698.6" [1] "position 3 cylinder OK30772 description: LT CO2 = 393.42 O2 = -583.1" [1] "position 4 cylinder OK30766 description: WT CO2 = 404.53 O2 = -782.9" [1] "position 5 cylinder OK30769 description: LP CO2 = 404.95 O2 = -714.7" [1] 378.7250 408.7677 393.4155 404.5340 404.9485 [1] -553.3155 -698.5809 -583.1425 -782.9400 -714.7415 [1] "Nominal linear calibrations:" [1] "co2scl = 1.037 co2off = -6.54 o2scla = -0.055 o2offa = -133.6" [1] "(dV/V)/(dXO2/XO2) = -3.794" [1] "(dV/V)/d(O2/N2) = -2.999" [1] "Reading in very high resolution timeseries" Read 364040 records [1] 364040 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 04:06:23 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 04:06:26 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -2.999" [1] "o2scaleavenew_drelVdrelP = -3.794" [1] "median(o2scalenew) = -3.014" [1] "Empirical dV/V vs dP/P relationship =-4.149, r^2 =0.354, damping =1.094" [1] "Tue May 13 04:06:26 PM MDT 2025 done redoing corrections" [1] "NON-INTEGER NGAS IN JOGAVES AT:" [1] 17581 $icochar [1] "0" "0" "24:54:52" "14:22:00" "271.595" [6] "0" "0" "271.651611" "271.651611" "271.653699" [11] "271.653699" "271.656384" "271.656384" "271.660261" "271.660261" [16] "271.805817" "271.807904" "271.809694" "271.917071" "271.838030" [21] "272.036975" "271.78" "271.8" "271.83" "271.85" [26] "271.88" "271.91" "271.955" "271.99" "272.01" $ecochar [1] "367" "14:22:00" "367" "24:54:52" "14:36:08" [6] "16:03:12" "16:03:12" "271.652804" "271.652804" "271.655190" [11] "271.655190" "271.658471" "271.658471" "271.661156" "271.661156" [16] "271.806711" "271.809694" "271.811185" "271.918861" "271.83922" [21] "272.038765" "271.8" "271.83" "271.85" "271.88" [26] "271.91" "271.955" "271.99" "272.01" "24:54:52" $flag [1] "all" "LP" "LP" "flight" [5] "screensampboth" "donotreporto2" "donotreportco2" "donotreportco2" [9] "donotreporto2" "donotreportco2" "donotreporto2" "donotreportco2" [13] "donotreporto2" "donotreportco2" "donotreporto2" "donotreporto2" [17] "donotreporto2" "donotreporto2" "donotreporto2" "donotreporto2" [21] "donotreporto2" "b" "c" "d" [25] "e" "f" "g" "h" [29] "i" "j" $ico2 [1] 0.0000 0.0000 272.0381 271.5986 271.5950 0.0000 0.0000 271.6516 [9] 271.6516 271.6537 271.6537 271.6564 271.6564 271.6603 271.6603 271.8058 [17] 271.8079 271.8097 271.9171 271.8380 272.0370 271.7800 271.8000 271.8300 [25] 271.8500 271.8800 271.9100 271.9550 271.9900 272.0100 $eco2 [1] 367.0000 271.5986 367.0000 272.0381 271.6084 271.6689 271.6689 271.6528 [9] 271.6528 271.6552 271.6552 271.6585 271.6585 271.6612 271.6612 271.8067 [17] 271.8097 271.8112 271.9189 271.8392 272.0388 271.8000 271.8300 271.8500 [25] 271.8800 271.9100 271.9550 271.9900 272.0100 272.0381 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 17580 17580 272.0381 9.058207 -0.00101785 0.0094861 0.0094861 17580 17581 17581 272.0381 9.061314 -0.00114715 0.0092410 0.0092410 17581 17582 17582 272.0381 9.057560 -0.00211355 0.0097887 0.0097887 17582 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 17580 10.5 1.00 63.00 23210.50 -1 9.063466 9.062982 17581 10.5 4.75 63.75 5811.75 1 9.066512 9.065965 17582 10.5 6.00 64.00 25.50 -1 9.063531 9.062518 vuvsigpdprcorr 17580 9.058469 17581 9.061567 17582 9.057861 [1] 1.038076 1.038103 1.038130 [,1] [,2] [,3] [1,] 1.038087 -1 1 [2,] 1.038097 1 1 [3,] 1.038103 1 6 [4,] 1.038109 1 6 [5,] 1.038114 1 6 [6,] 1.038124 -1 6 [7,] 1.038130 -1 6 [8,] 1.038136 -1 6 [9,] 1.038141 -1 6 [10,] 1.038151 1 6 [11,] 1.038157 1 6 [12,] 1.038163 1 6 [13,] 1.038169 1 6 [1] "NON-INTEGER NGASNUM IN JOGAVES AT:" [1] 17581 $icochar [1] "0" "0" "24:54:52" "14:22:00" "271.595" [6] "0" "0" "271.651611" "271.651611" "271.653699" [11] "271.653699" "271.656384" "271.656384" "271.660261" "271.660261" [16] "271.805817" "271.807904" "271.809694" "271.917071" "271.838030" [21] "272.036975" "271.78" "271.8" "271.83" "271.85" [26] "271.88" "271.91" "271.955" "271.99" "272.01" $ecochar [1] "367" "14:22:00" "367" "24:54:52" "14:36:08" [6] "16:03:12" "16:03:12" "271.652804" "271.652804" "271.655190" [11] "271.655190" "271.658471" "271.658471" "271.661156" "271.661156" [16] "271.806711" "271.809694" "271.811185" "271.918861" "271.83922" [21] "272.038765" "271.8" "271.83" "271.85" "271.88" [26] "271.91" "271.955" "271.99" "272.01" "24:54:52" $flag [1] "all" "LP" "LP" "flight" [5] "screensampboth" "donotreporto2" "donotreportco2" "donotreportco2" [9] "donotreporto2" "donotreportco2" "donotreporto2" "donotreportco2" [13] "donotreporto2" "donotreportco2" "donotreporto2" "donotreporto2" [17] "donotreporto2" "donotreporto2" "donotreporto2" "donotreporto2" [21] "donotreporto2" "b" "c" "d" [25] "e" "f" "g" "h" [29] "i" "j" $ico2 [1] 0.0000 0.0000 272.0381 271.5986 271.5950 0.0000 0.0000 271.6516 [9] 271.6516 271.6537 271.6537 271.6564 271.6564 271.6603 271.6603 271.8058 [17] 271.8079 271.8097 271.9171 271.8380 272.0370 271.7800 271.8000 271.8300 [25] 271.8500 271.8800 271.9100 271.9550 271.9900 272.0100 $eco2 [1] 367.0000 271.5986 367.0000 272.0381 271.6084 271.6689 271.6689 271.6528 [9] 271.6528 271.6552 271.6552 271.6585 271.6585 271.6612 271.6612 271.8067 [17] 271.8097 271.8112 271.9189 271.8392 272.0388 271.8000 271.8300 271.8500 [25] 271.8800 271.9100 271.9550 271.9900 272.0100 272.0381 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 17580 17580 272.0381 9.058207 -0.00101785 0.0094861 0.0094861 17580 17581 17581 272.0381 9.061314 -0.00114715 0.0092410 0.0092410 17581 17582 17582 272.0381 9.057560 -0.00211355 0.0097887 0.0097887 17582 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 17580 10.5 1.00 63.00 23210.50 -1 9.063466 9.062982 17581 10.5 4.75 63.75 5811.75 1 9.066512 9.065965 17582 10.5 6.00 64.00 25.50 -1 9.063531 9.062518 vuvsigpdprcorr 17580 9.058469 17581 9.061567 17582 9.057861 [1] 1.038076 1.038103 1.038130 [,1] [,2] [,3] [1,] 1.038087 -1 1 [2,] 1.038097 1 1 [3,] 1.038103 1 6 [4,] 1.038109 1 6 [5,] 1.038114 1 6 [6,] 1.038124 -1 6 [7,] 1.038130 -1 6 [8,] 1.038136 -1 6 [9,] 1.038141 -1 6 [10,] 1.038151 1 6 [11,] 1.038157 1 6 [12,] 1.038163 1 6 [13,] 1.038169 1 6 [1] "JOGAVES DOES NOT MATCH" [1] "MASKING 20 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 04:07:26 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 19.3881599981978 SECONDS" [1] "Tue May 13 04:07:26 PM MDT 2025 done recreating mr o2diffs" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 348.438 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 195.771 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 195.663 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 33.941 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 12 [1] 28 [1] 80 [1] 80 [1] 80 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 1 271.5575 421.7635048 1002050.7 1 [2,] 2 271.5575 145.8761062 1002504.7 -1 [3,] 3 271.5575 24.9788984 1002501.6 1 [4,] 84 271.5597 -474.1253627 1003814.9 -1 [5,] 162 271.5619 -367.4361621 1005469.9 -1 [6,] 240 271.5640 -444.0737663 1007154.7 -1 [7,] 254 271.5644 -584.6134918 1007354.2 -1 [8,] 255 271.5644 -588.5458458 1007959.2 1 [9,] 256 271.5661 -780.6690379 1008981.7 -1 [10,] 257 271.5667 -577.0624388 1009948.3 1 [11,] 258 271.5667 -573.4093114 1009382.4 -1 [12,] 318 271.5684 -382.5914049 1010387.2 -1 [13,] 466 271.5724 -529.8638922 1011098.2 -1 [14,] 540 271.5744 -364.5615925 1011573.9 -1 [15,] 778 271.5809 -663.6576970 1011682.4 -1 [16,] 854 271.5829 -366.4031343 1012210.7 -1 [17,] 1238 271.5933 -655.8175465 1016715.3 -1 [18,] 1390 271.5975 -256.5460776 1016259.3 -1 [19,] 1538 271.6015 1089.7962967 1014268.1 -1 [20,] 1540 271.6016 888.9810474 1014023.0 -1 [21,] 1542 271.6016 620.4513893 1013698.4 -1 [22,] 1543 271.6016 19.5723258 1013085.2 1 [23,] 1544 271.6017 -557.2173300 1012517.7 -1 [24,] 1620 271.6037 -220.4838118 1011200.8 -1 [25,] 2908 271.6390 -433.6626877 980654.2 -1 [26,] 2988 271.6412 -192.2523942 977870.5 -1 [27,] 2989 271.6412 -423.2305159 978019.4 1 [28,] 2990 271.6412 -642.2632160 977350.4 -1 [29,] 3613 271.6582 -449.2758351 982856.5 1 [30,] 3614 271.6582 -262.2275443 982240.9 -1 [31,] 3615 271.6582 -210.1482741 982225.4 1 [32,] 4460 271.6814 -473.5008599 965899.4 -1 [33,] 4466 271.6815 -666.6967271 965651.0 -1 [34,] 4542 271.6836 -221.8918844 965307.6 -1 [35,] 4616 271.6856 -517.9844782 964434.9 -1 [36,] 4692 271.6877 -34.1025230 964378.5 -1 [37,] 5728 271.7161 -418.6322002 967489.0 -1 [38,] 5734 271.7163 -259.6540034 967694.1 -1 [39,] 5810 271.7183 -659.8757960 968019.0 -1 [40,] 7076 271.7510 -428.8110606 986429.4 -1 [41,] 7162 271.7534 -629.2398842 992635.1 -1 [42,] 7163 271.7534 -432.5047590 993315.7 1 [43,] 7164 271.7534 -238.3780479 993142.4 -1 [44,] 7246 271.7556 0.5454863 997360.2 -1 [45,] 7980 271.7758 -412.3509944 988120.1 -1 [46,] 8048 271.7776 -624.2674179 986759.1 -1 [47,] 9468 271.8165 -405.0492783 1000093.7 -1 [48,] 9474 271.8166 -630.6678812 999888.0 -1 [49,] 9538 271.8184 -258.8848276 1000544.4 -1 [50,] 11072 271.8604 -456.8644622 992002.6 -1 [51,] 11078 271.8606 -259.6175433 992322.0 -1 [52,] 11140 271.8623 -611.0941548 993234.6 -1 [53,] 12220 271.8917 -411.6392102 995758.3 -1 [54,] 12226 271.8919 -637.9297333 995432.3 -1 [55,] 12290 271.8936 -231.2942243 995216.5 -1 [56,] 12352 271.8953 -512.8883174 994787.2 -1 [57,] 13632 271.9304 -393.1250252 1022723.8 -1 [58,] 13638 271.9306 -686.5235584 1022468.0 -1 [59,] 13700 271.9323 -294.9307417 1023207.3 -1 [60,] 13764 271.9340 -556.8285859 1022804.8 -1 [61,] 13826 271.9357 -118.5235018 1022800.7 -1 [62,] 14934 271.9660 -411.7518836 1018118.0 -1 [63,] 15002 271.9678 -620.0424896 1019272.4 -1 [64,] 16232 272.0013 -412.0347841 1023208.1 -1 [65,] 16300 272.0032 -307.0047205 1024850.5 -1 [66,] 17539 272.0370 -491.5569218 1026980.3 1 [67,] 17540 272.0370 -443.7616887 1026426.8 -1 [68,] 17541 272.0370 -428.2862996 1026756.2 1 [69,] 17582 272.0381 -451.9617837 1026100.2 -1 [70,] 17602 272.0387 -475.6047175 1026112.5 -1 [71,] 17603 272.0387 -710.0544367 1026605.3 1 [72,] 17604 272.0387 -980.2019035 1025580.1 -1 [73,] 17606 272.0388 -1240.3149784 1025319.4 -1 [74,] 17608 272.0388 -1042.5715650 1025533.4 -1 [75,] 17610 272.0389 -686.8730560 1025885.4 -1 [76,] 17612 272.0390 -382.3230208 1026188.2 -1 [77,] 18014 272.0497 -652.2871716 1032380.5 -1 [78,] 18138 272.0531 -482.3421468 1037008.4 -1 [79,] 18139 272.0531 -252.6363714 1037523.0 1 [80,] 18140 272.0532 -25.3076898 1037534.1 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 235 271.5639 1.025168e+04 [2,] 2638 271.6316 9.880942e+10 [3,] 2655 271.6320 9.905943e+10 [4,] 6473 271.7355 1.021942e+04 [5,] 7506 271.7627 9.883911e+05 [6,] 10279 271.8387 9.905974e+07 [7,] 15739 271.9878 2.987760e+02 [8,] 17892 272.0466 2.983530e+02 [9,] 17998 272.0493 1.003095e+09 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 348.438 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) -30.587 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) -24.143 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 25.034 PER MEG" [1] 271.5950 271.6084 [1] "Screened 135 sample O2 values from screensampboth period 271.595 to 271.608425925926" [1] "Screened 135 sample CO2 values from screensampboth period 271.595 to 271.608425925926" [1] 378.7250 408.7677 393.4155 404.5340 404.9485 [1] -553.3155 -698.5809 -583.1425 -782.9400 -714.7415 [1] "Nominal linear calibrations:" [1] "co2scl = 1.038 co2off = -6.61 o2scla = -0.055 o2offa = -133.5" [1] "(dV/V)/(dXO2/XO2) = -3.801" [1] "(dV/V)/d(O2/N2) = -3.005" [1] "Finding cal and sample periods" [1] "Median Cal: 2.82 minutes" [1] "Average Cal: 2.67 minutes" [1] "Shortest Cal: 0.19 minutes" [1] "Longest Cal: 6.3 minutes" [1] "Removed 3 calibration period(s) with less than 30 seconds of data" [1] "at: 14" [1] "at: 43" [1] "at: 60" [1] "Reading in aircraft data" [1] "Reading /scr/raf/stephens/HUMERGE/ATOM3/MMS/MMS-1HZ_DC8_20170928_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 17 items Read 17 items Read 1 item Read 1 item Read 18 items Read 666792 items [1] "Reading /scr/raf/stephens/HUMERGE/ATOM3/MMS/MMS-20Hz_DC8_20170928_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 25 items Read 25 items Read 1 item Read 1 item Read 26 items Read 19279910 items [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.00768" [1] "HS CO2 vs. PACAB: m = -0.00814, r^2 = 0.68" [1] "LS CO2 vs. PACAB: m = -0.00723, r^2 = 0.45" [1] "HS+LS LIH2O vs. PACAB: m = -9.12e-05" [1] "HS LIH2O vs. PACAB: m = -9.57e-05, r^2 = 0.36" [1] "LS LIH2O vs. PACAB: m = -8.67e-05, r^2 = 0.44" [1] "HS+LS CO2 vs. LIH2O: m = 53.8" [1] "HS CO2 vs. LIH2O: m = 45.8, r^2 = 0.52" [1] "LS CO2 vs. LIH2O: m = 61.7, r^2 = 0.56" [1] "APCO2 vs. PACAB: m = 0.01, r^2 = 0.08" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 0.0548" [1] "HS O2 vs. PACAB: m = 0.0562, r^2 = 0.08" [1] "LS O2 vs. PACAB: m = 0.0535, r^2 = 0.12" [1] "HS+LS O2 vs. LIH2O: m = -633" [1] "HS O2 vs. LIH2O: m = -831, r^2 = 0.49" [1] "LS O2 vs. LIH2O: m = -436, r^2 = 0.12" [1] "HS+LS O2 vs. PAO2: m = -9.68" [1] "HS O2 vs. PAO2: m = -10.1, r^2 = 0.7" [1] "LS O2 vs. PAO2: m = -9.25, r^2 = 0.9" [1] "HS+LS O2 vs. TPBOX: m = 1.98" [1] "HS O2 vs. TPBOX: m = 1.78, r^2 = 0.43" [1] "LS O2 vs. TPBOX: m = 2.17, r^2 = 0.78" [1] "APO vs. PACAB: m = -0.164, r^2 = 0.08" [1] "APO vs. PAO2: m = -11.3, r^2 = 0.09" [1] "APO vs. TPBOX: m = 4.2, r^2 = 0.07" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = -0.292, r^2 = 0.12" [1] "LS CO2 vs. LiCor Cell P: m = -0.372, r^2 = 0.16" [1] "HS CO2 vs. CO2 Vol P: m = 0.562, r^2 = 0.46" [1] "LS CO2 vs. CO2 Vol P: m = 0.545, r^2 = 0.4" [1] "HS CO2 vs. SLOPE: m = -0.415, r^2 = 0.02" [1] "LS CO2 vs. SLOPE: m = 0.909, r^2 = 0.19" [1] "HS O2 vs. O2 Vol P: m = -8.32, r^2 = 0.58" [1] "LS O2 vs. O2 Vol P: m = -9.4, r^2 = 0.86" [1] "HS O2 vs. O2 Cell T: m = 3.7, r^2 = 0.5" [1] "LS O2 vs. O2 Cell T: m = 4.74, r^2 = 0.84" [1] "HS O2 vs. CO2 Vol P: m = -9.93, r^2 = 0.46" [1] "LS O2 vs. CO2 Vol P: m = -9.37, r^2 = 0.49" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = -0.793, r^2 = 0.02" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = 0.0726, r^2 = 0" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -9.93, r^2 = 0.46" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -9.37, r^2 = 0.49" [1] "HS O2 vs. LIH2O: m = -695, r^2 = 0.38" [1] "LS O2 vs. LIH2O: m = -408, r^2 = 0.1" [1] "HS O2 vs. SLOPE: m = -0.609, r^2 = 0.22" [1] "LS O2 vs. SLOPE: m = -0.0981, r^2 = 0.01" [1] "HS CO2 vs. Time: m = 8.72, r^2 = 0.8" [1] "LS CO2 vs. Time: m = 8.842, r^2 = 0.8" [1] "HS CO2 vs. Cylinder T: m = 0.379, r^2 = 0.01" [1] "LS CO2 vs. Cylinder T: m = -0.102, r^2 = 0.001" [1] "HS CO2 vs. Regulator T: m = -0.411, r^2 = 0.58" [1] "LS CO2 vs. Regulator T: m = -0.436, r^2 = 0.594" [1] "HS CO2 vs. Ref. Volumes T: m = -0.424, r^2 = 0.34" [1] "LS CO2 vs. Ref. Volumes T: m = -0.544, r^2 = 0.444" [1] "HS CO2 vs. Manifold T: m = -0.166, r^2 = 0.72" [1] "LS CO2 vs. Manifold T: m = -0.191, r^2 = 0.771" [1] "HS CO2 vs. Pump Box T: m = -0.131, r^2 = 0.8" [1] "LS CO2 vs. Pump Box T: m = -0.153, r^2 = 0.85" [1] "HS O2 vs. Cylinder T: m = -13.735, r^2 = 0.04" [1] "LS O2 vs. Cylinder T: m = -0.426, r^2 = 0" [1] "HS O2 vs. Regulator T: m = 4.904, r^2 = 0.26" [1] "LS O2 vs. Regulator T: m = 5.274, r^2 = 0.359" [1] "HS O2 vs. Ref. Volumes T: m = 3.999, r^2 = 0.1" [1] "LS O2 vs. Ref. Volumes T: m = 6.621, r^2 = 0.272" [1] "HS O2 vs. Manifold T: m = 2.37, r^2 = 0.47" [1] "LS O2 vs. Manifold T: m = 3.144, r^2 = 0.862" [1] "HS O2 vs. Pump Box T: m = 1.531, r^2 = 0.35" [1] "LS O2 vs. Pump Box T: m = 2.211, r^2 = 0.729" [1] "HS CO2 vs. WT P: m = -0.008, r^2 = 0.53" [1] "LS CO2 vs. WT P: m = -0.007, r^2 = 0.387" [1] "HS CO2 vs. SP P: m = -0.00818, r^2 = 0.67" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.079, r^2 = 0.7" [1] "HS CO2 vs. SP P comb with PACAB: m = -0.087, r^2 = 0.7" [1] "LS CO2 vs. SP P: m = -0.00739, r^2 = 0.57" [1] "LS CO2 vs. PACAB comb with SP P: m = 0.018, r^2 = 0.42" [1] "LS CO2 vs. SP P comb with PACAB: m = -0.025, r^2 = 0.42" [1] "HS CO2 vs. WT FL: m = -0.182, r^2 = 0.83" [1] "LS CO2 vs. WT FL: m = -0.2, r^2 = 0.894" [1] "HS CO2 vs. SP FL: m = -0.009, r^2 = 0" [1] "LS CO2 vs. SP FL: m = -0.039, r^2 = 0.012" [1] "HS O2 vs. SLPDIFF: m = 1.078, r^2 = 0.39" [1] "LS O2 vs. SLPDIFF: m = 0.851, r^2 = 0.085" [1] "HS O2 vs. WT P: m = 0.055, r^2 = 0.08" [1] "LS O2 vs. WT P: m = 0.061, r^2 = 0.109" [1] "HS O2 vs. SP P: m = 0.06, r^2 = 0.1" [1] "LS O2 vs. SP P: m = 0.066, r^2 = 0.129" [1] "HS O2 vs. WT FL: m = 1.953, r^2 = 0.31" [1] "LS O2 vs. WT FL: m = 2.47, r^2 = 0.564" [1] "HS O2 vs. SP FL: m = 1.588, r^2 = 0.04" [1] "LS O2 vs. SP FL: m = 1.426, r^2 = 0.067" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): 55.8, 57.12" [1] "Empirical LP O2 lag flow(s): 105.6, 101.1" [1] "Empirical LP CO2 lag time(s): 51.14, 64.12" [1] "Empirical LP CO2 lag flow(s): 105.6, 101.1" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.4" [1] "Median all HS CO2 SD = 0.4" [1] "Median all LS CO2 SD = 0.4" [1] "Median all LT CO2 SD = 0.39" [1] "Median all WT CO2 SD = 0.39" [1] "Median all HS or LS CO2 SD = 0.4" [1] "Median all cal O2 SD = 1.77" [1] "Median all HS O2 SD = 1.77" [1] "Median all LS O2 SD = 1.67" [1] "Median all LT O2 SD = 1.15" [1] "Median all WT O2 SD = 1.35" [1] "Median all HS or LS O2 SD = 1.67" [1] "Median all cal CO2 Slope = 0" [1] "Median all HS CO2 Slope = 0" [1] "Median all LS CO2 Slope = -0.03" [1] "Median all LT CO2 Slope = 0.02" [1] "Median all WT CO2 Slope = -0.01" [1] "Median all HS or LS CO2 Slope = -0.01" [1] "Median all cal O2 Slope = 0.48" [1] "Median all HS O2 Slope = 0.19" [1] "Median all LS O2 Slope = 0.24" [1] "Median all LT O2 Slope = 0.35" [1] "Median all WT O2 Slope = 0.16" [1] "Median all HS or LS O2 Slope = 0.21" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 3.74 per meg" [1] "Initial O2 Calibration Offset = -0.44 per meg" [1] "SD of O2 Calibration (post-takeoff) = 2.86 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = -3.3 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = -8.08 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using ATom2 inlet volumes" [1] "before any lag: 48166.62 91140.34" [1] "Time lag adjustments = 17 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 60.3 at 103 sccm" [1] "Median O2 delay + tlagff = 61 at 103 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 59.5 at 103 sccm" [1] "Median O2 delay from 3-way + tlagff = 60.3 at 103 sccm" [1] "after calc and ff lag: 48103.47 91078.04" [1] "2025-05-13 16:08:37 MDT" [1] "Calculating 1-sec interpolated values" [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] 19.10304724 22.58730884 20.76736629 20.76736629 20.76736629 20.76736629 [7] 26.18517668 26.18517668 26.18517668 26.11143403 26.12566336 26.32453790 [13] 26.05676026 25.91992798 25.83409647 21.65081035 21.65081035 21.65081035 [19] 21.65081035 27.25080244 24.22083013 22.33843084 22.33843084 22.45094767 [25] 18.36377566 18.36377566 18.35136130 20.73288621 20.73288621 20.73288621 [31] 20.41188431 16.56160269 16.45260454 16.45260454 16.45260454 14.62280477 [37] 14.62280477 14.65630145 15.43019553 16.85621290 18.98337231 17.11505180 [43] 16.54462106 18.60540663 20.91346415 20.91346415 22.09564368 22.36286219 [49] 20.06162541 15.73227287 13.11522793 11.95930057 7.21057049 7.21057049 [55] 7.21057049 7.21057049 8.65685578 21.99071706 21.99071706 15.58510434 [61] 4.05017526 1.25297927 3.19682800 5.77412464 6.86418502 16.12641539 [67] 10.57146106 10.57146106 11.64788346 17.26062995 21.26760999 24.45795995 [73] 23.11980254 14.63066697 14.63066697 14.57483119 10.78375935 7.32202548 [79] 6.34064362 6.34064362 5.49455314 8.04104304 12.43593978 12.43593978 [85] 12.43593978 20.61267512 16.35093028 16.35093028 16.35093028 15.75248177 [91] 19.35716468 15.52988952 15.52988952 15.52988952 11.12107633 9.13932864 [97] 9.13932864 9.13932864 5.59601832 5.42088930 5.42088930 7.28551194 [103] 12.41850996 12.79523385 12.79523385 12.79523385 12.79523385 20.29562096 [109] 20.51572287 20.70364110 20.75406600 19.65873221 19.65873221 19.65873221 [115] 19.65873221 19.21781346 17.15399477 15.93485971 15.93485971 15.25680508 [121] 15.23748712 15.23748712 15.23748712 14.50477796 13.36191813 13.47067023 [127] 14.11900429 14.76521706 20.27210249 20.27210249 20.27210249 20.27210249 [133] 18.36737527 18.36737527 18.36737527 18.36737527 15.99620268 16.15177717 [139] 16.68541629 16.68541629 14.17380652 6.63662233 6.63662233 6.63662233 [145] 6.86389927 25.74251509 25.58045527 25.40777796 25.11682897 19.04546757 [151] 18.96799724 18.96799724 18.96799724 11.94678602 11.94678602 11.94678602 [157] 12.43558679 10.37769537 10.03563622 10.03563622 10.03563622 10.80696004 [163] 26.83202863 26.83202863 26.83202863 25.16771372 16.26408155 16.06580263 [169] 16.06580263 16.06580263 14.54298657 14.54298657 15.10100457 16.25539729 [175] 16.40788887 16.48075118 16.50147442 16.50147442 15.14919339 14.05399076 [181] 14.06097715 14.06649402 14.52649571 20.29430074 20.30160519 20.39898577 [187] 20.41019582 11.94611638 11.94611638 9.69343900 9.37651101 7.34300284 [193] 7.34300284 5.63610507 2.19091094 13.58325037 13.58325037 13.58325037 [199] 17.62657027 15.46612054 15.54554061 15.70108076 15.70108076 14.91922161 [205] 13.61239489 13.61239489 13.61239489 13.61239489 18.32135916 18.05859017 [211] 17.79307889 17.48592715 18.59030329 18.38723608 18.28501296 18.28501296 [217] 8.20879503 7.54529237 7.54529237 7.54529237 16.78882531 19.72560631 [223] 19.72560631 19.72560631 19.31006122 16.41413115 16.41413115 16.41413115 [229] 16.41413115 16.31961189 16.31961189 16.31961189 16.31961189 9.81970175 [235] 9.81970175 9.81970175 9.81970175 12.56856399 13.38467462 13.38467462 [241] 13.38467462 13.33217279 10.23154902 10.23154902 10.23154902 9.77891708 [247] 3.73025012 3.73025012 3.73025012 3.73025012 19.28723110 19.93430599 [253] 20.57415481 21.07260103 20.66368163 20.66368163 20.66368163 20.66368163 [259] 18.47207579 16.02831893 16.02831893 16.02831893 15.52196240 7.10104892 [265] 7.10104892 7.47902681 9.02994219 26.85400492 28.46661242 28.46661242 [271] 28.46661242 32.15390582 32.15390582 32.15390582 32.15390582 14.52092931 [277] 14.52092931 14.52092931 14.52092931 28.08000603 27.42683078 26.74266176 [283] 25.66241489 21.71679325 18.24389839 17.18242021 17.18242021 17.18242021 [289] 14.73076639 14.73076639 14.73076639 14.73076639 15.39542130 16.49041143 [295] 16.49041143 16.49041143 9.00019650 9.00019650 5.55639469 3.78451945 [301] 14.36746737 14.36746737 14.36746737 14.83772954 12.89985932 9.91062457 [307] 10.25381331 10.25381331 10.14213664 7.49526079 6.90623624 5.82935542 [313] 5.82935542 10.10993401 10.10993401 8.48190621 5.65175367 5.51994028 [319] 5.49432225 5.49432225 4.19826455 1.21736764 1.21736764 1.21736764 [325] 1.21736764 0.96653567 0.43225392 0.02046896 0.02046896 0.02046896 [331] 4.47542025 12.88488850 23.04521211 24.58379514 35.23064328 35.23064328 [337] 35.23064328 30.24198033 7.27232733 7.27232733 7.27232733 7.27232733 [343] 8.33326850 9.27437597 8.63779724 7.85810573 7.12861059 6.12354359 [349] 6.12354359 6.12354359 6.12354359 17.21569383 18.09787225 19.35284777 [355] 20.42132837 6.51451991 7.17964036 7.17964036 7.17964036 8.29540116 [361] 8.37378640 8.37378640 8.37378640 14.20801122 18.87100341 16.51026901 [367] 14.18768954 14.18768954 0.06800804 0.06800804 0.06800804 0.06800804 [373] 5.06562688 8.67109731 10.63603580 10.63603580 19.18258733 19.18258733 [379] 19.18258733 19.18258733 7.38408500 1.63234974 -0.98868960 -0.98868960 [385] 3.36549940 16.01471918 16.01471918 16.01471918 16.01471918 1.72493649 [391] 4.08430475 4.53692166 4.95642450 11.96488615 11.96488615 11.96488615 [397] 12.13902090 13.42434930 14.73881251 16.44117341 17.34922529 17.51018438 [403] 17.52456029 17.52456029 17.52456029 17.52456029 25.95317204 26.42131581 [409] 26.42131581 26.42131581 24.01572082 24.01572082 24.01572082 23.17135069 [415] 13.75818228 12.77279149 12.77279149 12.77279149 12.40631360 12.33931229 [421] 12.33931229 12.81589661 10.58133713 10.63807085 11.06878513 11.06878513 [427] 11.06602425 10.76603684 10.45611768 9.60175575 6.46576656 8.77093345 [433] 8.77093345 8.77093345 8.77093345 14.12268429 14.12268429 14.12268429 [439] 14.82718214 18.20611373 20.74184571 22.28147290 22.28147290 20.36969062 [445] 16.26578896 16.26578896 16.26578896 16.26578896 13.76782822 10.20422068 [451] 7.16802810 7.05703110 9.01078524 9.01078524 9.01078524 9.01078524 [457] 0.32345950 0.32345950 2.05856102 4.39083339 12.18681447 14.98975739 [463] 16.78455701 17.38526096 15.60346685 9.79347386 9.79347386 [1] 129.5259 131.6464 133.5499 135.0054 136.1837 137.1732 137.6378 137.9517 [9] 138.1864 138.4100 138.6922 139.0014 139.7701 140.4333 141.0741 141.9023 [17] 142.7749 144.0905 145.1579 146.5645 147.9055 149.3926 151.9476 153.9090 [25] 155.9037 159.1582 161.4380 163.4888 166.2955 167.9626 169.1800 170.3013 [33] 171.0624 171.8721 172.5832 173.3654 174.3105 175.6889 177.5778 179.5993 [41] 182.5724 185.6911 188.8537 191.7370 194.4884 197.3749 200.2795 202.8686 [49] 205.1707 206.9855 208.2243 209.1510 209.9343 210.5851 211.3672 212.5169 [57] 213.6849 215.2676 217.2910 220.2620 223.9056 228.1833 232.4638 236.5305 [65] 240.0136 242.8447 244.8358 247.1387 249.1755 251.3908 253.8301 256.2205 [73] 258.0090 260.5615 262.8463 264.8545 266.6189 268.5905 270.8642 272.6498 [81] 274.5075 276.4250 278.2535 280.2704 282.1140 283.9903 285.8253 287.6750 [89] 289.2903 291.4502 293.3084 295.1612 297.4837 299.4042 301.4083 303.6472 [97] 305.8758 308.0179 310.8783 313.3283 315.7326 318.5924 320.3859 322.0133 [105] 323.3020 324.5572 325.8413 327.1346 328.6951 330.4924 332.1850 333.5224 [113] 334.7485 335.7090 336.8214 337.8802 338.7706 339.6673 340.5055 341.2634 [121] 341.8921 342.5310 343.5120 344.2555 344.8306 345.4622 346.2025 346.9404 [129] 347.7972 348.5221 349.3718 350.1982 350.9215 351.6519 352.4121 353.2389 [137] 354.0398 354.8770 355.6555 356.5016 357.2850 358.1370 358.9858 360.0887 [145] 361.0649 361.9776 362.8105 363.6688 364.5494 365.4498 366.4789 367.3267 [153] 368.1766 369.1770 370.0798 371.0440 371.9217 372.8391 373.7265 374.6724 [161] 375.5516 376.2942 377.0354 377.9352 379.0349 380.2743 381.4847 382.6621 [169] 383.7695 384.9846 385.8153 386.8249 387.7701 388.7722 389.8880 391.0372 [177] 392.2574 393.5154 394.9610 396.4501 398.1447 399.8363 401.6232 403.4598 [185] 405.3170 406.8951 408.7193 410.6531 412.3360 414.2260 415.8831 417.5734 [193] 419.2305 420.7717 422.8393 424.6388 426.1821 427.7973 429.0636 430.1040 [201] 431.1793 432.1717 433.1035 433.9922 434.7971 435.5280 436.0057 436.5831 [209] 436.9618 437.2783 437.5981 437.9681 438.2519 438.4965 438.7598 439.0370 [217] 439.3126 439.5631 439.8285 440.2050 440.6266 440.9989 441.2597 441.5489 [225] 441.8400 441.9739 441.8986 441.7729 441.6623 441.5031 441.3799 441.2673 [233] 441.1701 441.1921 441.2700 441.3219 441.2683 441.3100 441.3479 441.2700 [241] 441.2516 441.3000 441.1973 441.1212 441.1787 441.5318 441.9764 442.4297 [249] 442.9464 443.6066 444.1457 444.6684 445.1853 445.6637 446.1685 446.6625 [257] 447.1009 447.6795 448.2098 448.6620 448.9727 449.3602 449.7191 450.1185 [265] 450.5091 451.0179 451.4984 452.1990 452.8027 453.4777 454.0711 454.4852 [273] 454.8356 455.2086 455.6983 456.1480 456.5874 457.0353 457.4882 457.9404 [281] 458.4620 459.0083 459.5012 460.0788 460.5198 461.0988 461.8116 462.6271 [289] 463.4040 464.2776 465.0258 466.0868 466.9706 468.0571 469.0792 470.4151 [297] 471.5028 472.6216 473.7572 474.9307 476.1148 477.3276 478.3894 479.6494 [305] 480.7628 482.0349 483.2689 484.5079 485.7513 487.0048 488.2458 489.4734 [313] 490.8933 492.2645 493.3796 494.9809 496.2660 497.5191 499.0447 500.4980 [321] 502.0274 503.3512 504.5351 505.9040 507.1577 508.5361 509.8446 511.0447 [329] 512.2593 513.6065 514.7959 515.9121 517.1407 518.1709 519.3857 520.5329 [337] 521.5872 522.6277 523.5912 524.5292 525.5025 526.3957 527.3008 528.1523 [345] 528.9782 529.7786 530.8955 531.7372 532.4518 533.2143 533.8509 534.5324 [353] 535.0477 535.7288 536.4073 537.0628 537.6058 538.1898 538.7884 539.4436 [361] 540.0774 540.7831 541.4559 542.1302 542.8687 543.3952 544.1138 544.8497 [369] 545.5810 546.2602 546.9827 547.8220 548.5547 549.3328 550.1186 550.8624 [377] 551.6462 552.3942 553.1478 553.8957 554.6704 555.4468 556.1649 556.9284 [385] 557.6268 558.3898 559.1290 559.7594 560.6118 561.3842 562.1404 562.9015 [393] 563.6115 564.4208 565.1077 566.0043 566.7364 567.6727 568.4725 569.1931 [401] 569.9590 570.7954 571.5160 572.2406 572.9377 573.6092 574.5103 575.2927 [409] 576.0409 576.8321 577.6204 578.2770 579.1826 579.9049 580.5676 581.3811 [417] 581.9726 582.8149 583.5198 584.2432 584.9589 585.8106 586.7914 587.5038 [425] 588.2013 588.9124 589.6229 590.3173 591.1616 591.8602 592.8085 593.6315 [433] 594.2871 594.9241 595.5920 596.1906 596.6745 597.1489 597.6411 598.0965 [441] 598.5912 599.0563 599.6106 600.1226 600.6666 601.2280 601.7785 602.4616 [449] 603.0835 603.6645 604.1594 604.8281 605.4108 605.9370 606.5174 607.0677 [457] 607.6285 608.1764 608.6118 609.1833 609.7173 610.2051 610.7286 611.2775 [465] 611.7810 612.2728 612.8228 [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Not reporting 4005 O2 values from manual exclude period 0 to 271.668888888889" [1] "Not reporting 4005 APO values from manual exclude period 0 to 271.668888888889" [1] "Not reporting 4005 CO2 values from manual exclude period 0 to 271.668888888889" [1] "Not reporting 4005 APO values from manual exclude period 0 to 271.668888888889" [1] "Not reporting 44 CO2 values from manual exclude period 271.651611 to 271.652804" [1] "Not reporting 44 APO values from manual exclude period 271.651611 to 271.652804" [1] "Not reporting 44 O2 values from manual exclude period 271.651611 to 271.652804" [1] "Not reporting 44 APO values from manual exclude period 271.651611 to 271.652804" [1] "Not reporting 55 CO2 values from manual exclude period 271.653699 to 271.65519" [1] "Not reporting 55 APO values from manual exclude period 271.653699 to 271.65519" [1] "Not reporting 55 O2 values from manual exclude period 271.653699 to 271.65519" [1] "Not reporting 55 APO values from manual exclude period 271.653699 to 271.65519" [1] "Not reporting 77 CO2 values from manual exclude period 271.656384 to 271.658471" [1] "Not reporting 77 APO values from manual exclude period 271.656384 to 271.658471" [1] "Not reporting 77 O2 values from manual exclude period 271.656384 to 271.658471" [1] "Not reporting 77 APO values from manual exclude period 271.656384 to 271.658471" [1] "Not reporting 33 CO2 values from manual exclude period 271.660261 to 271.661156" [1] "Not reporting 33 APO values from manual exclude period 271.660261 to 271.661156" [1] "Not reporting 33 O2 values from manual exclude period 271.660261 to 271.661156" [1] "Not reporting 33 APO values from manual exclude period 271.660261 to 271.661156" [1] "Not reporting 33 O2 values from manual exclude period 271.805817 to 271.806711" [1] "Not reporting 33 APO values from manual exclude period 271.805817 to 271.806711" [1] "Not reporting 65 O2 values from manual exclude period 271.807904 to 271.809694" [1] "Not reporting 65 APO values from manual exclude period 271.807904 to 271.809694" [1] "Not reporting 54 O2 values from manual exclude period 271.809694 to 271.811185" [1] "Not reporting 54 APO values from manual exclude period 271.809694 to 271.811185" [1] "Not reporting 65 O2 values from manual exclude period 271.917071 to 271.918861" [1] "Not reporting 65 APO values from manual exclude period 271.917071 to 271.918861" [1] "Not reporting 43 O2 values from manual exclude period 271.83803 to 271.83922" [1] "Not reporting 43 APO values from manual exclude period 271.83803 to 271.83922" [1] "Not reporting 66 O2 values from manual exclude period 272.036975 to 272.038765" [1] "Not reporting 66 APO values from manual exclude period 272.036975 to 272.038765" [1] "Not reporting 5157 smoothed O2 values from manual exclude period -0.000739199622677692 to 271.66820351952" [1] "Not reporting 5157 smoothed APO values from manual exclude period -0.000739199622677692 to 271.66820351952" [1] "Not reporting 5157 smoothed CO2 values from manual exclude period -0.000739199622677692 to 271.66820351952" [1] "Not reporting 5157 smoothed APO values from manual exclude period -0.000739199622677692 to 271.66820351952" [1] "Not reporting 104 smoothed CO2 values from manual exclude period 271.650919381139 to 271.652121025684" [1] "Not reporting 104 smoothed APO values from manual exclude period 271.650919381139 to 271.652121025684" [1] "Not reporting 104 smoothed O2 values from manual exclude period 271.650919381139 to 271.652121025684" [1] "Not reporting 104 smoothed APO values from manual exclude period 271.650919381139 to 271.652121025684" [1] "Not reporting 130 smoothed CO2 values from manual exclude period 271.653008318696 to 271.654509016153" [1] "Not reporting 130 smoothed APO values from manual exclude period 271.653008318696 to 271.654509016153" [1] "Not reporting 130 smoothed O2 values from manual exclude period 271.653008318696 to 271.654509016153" [1] "Not reporting 130 smoothed APO values from manual exclude period 271.653008318696 to 271.654509016153" [1] "Not reporting 182 smoothed CO2 values from manual exclude period 271.655694107897 to 271.657791514973" [1] "Not reporting 182 smoothed APO values from manual exclude period 271.655694107897 to 271.657791514973" [1] "Not reporting 182 smoothed O2 values from manual exclude period 271.655694107897 to 271.657791514973" [1] "Not reporting 182 smoothed APO values from manual exclude period 271.655694107897 to 271.657791514973" [1] "Not reporting 78 smoothed CO2 values from manual exclude period 271.659573002229 to 271.660478201659" [1] "Not reporting 78 smoothed APO values from manual exclude period 271.659573002229 to 271.660478201659" [1] "Not reporting 78 smoothed O2 values from manual exclude period 271.659573002229 to 271.660478201659" [1] "Not reporting 78 smoothed APO values from manual exclude period 271.659573002229 to 271.660478201659" [1] "Not reporting 79 smoothed O2 values from manual exclude period 271.805045272087 to 271.805951649614" [1] "Not reporting 79 smoothed APO values from manual exclude period 271.805045272087 to 271.805951649614" [1] "Not reporting 156 smoothed O2 values from manual exclude period 271.807141382038 to 271.808953255311" [1] "Not reporting 156 smoothed APO values from manual exclude period 271.807141382038 to 271.808953255311" [1] "Not reporting 131 smoothed O2 values from manual exclude period 271.808944551577 to 271.810451989353" [1] "Not reporting 131 smoothed APO values from manual exclude period 271.808944551577 to 271.810451989353" [1] "Not reporting 157 smoothed O2 values from manual exclude period 271.916329774413 to 271.918143721928" [1] "Not reporting 157 smoothed APO values from manual exclude period 271.916329774413 to 271.918143721928" [1] "Not reporting 103 smoothed O2 values from manual exclude period 271.837331536324 to 271.838529091565" [1] "Not reporting 103 smoothed APO values from manual exclude period 271.837331536324 to 271.838529091565" [1] "Not reporting 90 smoothed O2 values from manual exclude period 272.036221383671 to 272.038023597371" [1] "Not reporting 90 smoothed APO values from manual exclude period 272.036221383671 to 272.038023597371" [1] "Not reporting 5157 smoothed O2 values from manual exclude period -0.000739199622677692 to 271.66820351952" [1] "Not reporting 5157 smoothed APO values from manual exclude period -0.000739199622677692 to 271.66820351952" [1] "Not reporting 5157 smoothed CO2 values from manual exclude period -0.000739199622677692 to 271.66820351952" [1] "Not reporting 5157 smoothed APO values from manual exclude period -0.000739199622677692 to 271.66820351952" [1] "Not reporting 104 smoothed CO2 values from manual exclude period 271.650919381139 to 271.652121025684" [1] "Not reporting 104 smoothed APO values from manual exclude period 271.650919381139 to 271.652121025684" [1] "Not reporting 104 smoothed O2 values from manual exclude period 271.650919381139 to 271.652121025684" [1] "Not reporting 104 smoothed APO values from manual exclude period 271.650919381139 to 271.652121025684" [1] "Not reporting 130 smoothed CO2 values from manual exclude period 271.653008318696 to 271.654509016153" [1] "Not reporting 130 smoothed APO values from manual exclude period 271.653008318696 to 271.654509016153" [1] "Not reporting 130 smoothed O2 values from manual exclude period 271.653008318696 to 271.654509016153" [1] "Not reporting 130 smoothed APO values from manual exclude period 271.653008318696 to 271.654509016153" [1] "Not reporting 182 smoothed CO2 values from manual exclude period 271.655694107897 to 271.657791514973" [1] "Not reporting 182 smoothed APO values from manual exclude period 271.655694107897 to 271.657791514973" [1] "Not reporting 182 smoothed O2 values from manual exclude period 271.655694107897 to 271.657791514973" [1] "Not reporting 182 smoothed APO values from manual exclude period 271.655694107897 to 271.657791514973" [1] "Not reporting 78 smoothed CO2 values from manual exclude period 271.659573002229 to 271.660478201659" [1] "Not reporting 78 smoothed APO values from manual exclude period 271.659573002229 to 271.660478201659" [1] "Not reporting 78 smoothed O2 values from manual exclude period 271.659573002229 to 271.660478201659" [1] "Not reporting 78 smoothed APO values from manual exclude period 271.659573002229 to 271.660478201659" [1] "Not reporting 79 smoothed O2 values from manual exclude period 271.805045272087 to 271.805951649614" [1] "Not reporting 79 smoothed APO values from manual exclude period 271.805045272087 to 271.805951649614" [1] "Not reporting 156 smoothed O2 values from manual exclude period 271.807141382038 to 271.808953255311" [1] "Not reporting 156 smoothed APO values from manual exclude period 271.807141382038 to 271.808953255311" [1] "Not reporting 131 smoothed O2 values from manual exclude period 271.808944551577 to 271.810451989353" [1] "Not reporting 131 smoothed APO values from manual exclude period 271.808944551577 to 271.810451989353" [1] "Not reporting 157 smoothed O2 values from manual exclude period 271.916329774413 to 271.918143721928" [1] "Not reporting 157 smoothed APO values from manual exclude period 271.916329774413 to 271.918143721928" [1] "Not reporting 103 smoothed O2 values from manual exclude period 271.837331536324 to 271.838529091565" [1] "Not reporting 103 smoothed APO values from manual exclude period 271.837331536324 to 271.838529091565" [1] "Not reporting 90 smoothed O2 values from manual exclude period 272.036221383671 to 272.038023597371" [1] "Not reporting 90 smoothed APO values from manual exclude period 272.036221383671 to 272.038023597371" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1709/AO2_DC8_20170928_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 148176 items [1] 1 3705 37044 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 271 271 271 271 271 271 [1] 52570 52580 52590 52600 52610 52620 [1] "2017-09-28 14:36:10 UTC" "2017-09-28 14:36:20 UTC" [3] "2017-09-28 14:36:30 UTC" "2017-09-28 14:36:40 UTC" [5] "2017-09-28 14:36:50 UTC" "2017-09-28 14:37:00 UTC" [1] NA NA NA NA NA NA [1] 33775 [1] "Average Date / Time for slice RF01 = 2017-09-28 20:34:00.28141856193542" [1] "sum(lsel) = 2594" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 4.859 812.283 [1] 4.859 812.283 [1] 187.717 995.141 [1] 0 999999 [1] "no level flight between 275 and 375 hPa" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM3 RF01 APO_AO2 range = -354.57,-322.51" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1709/AO2_DC8_20170928_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 148176 items [1] 1 3705 37044 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 271 271 271 271 271 271 [1] 52570 52580 52590 52600 52610 52620 [1] "2017-09-28 14:36:10 UTC" "2017-09-28 14:36:20 UTC" [3] "2017-09-28 14:36:30 UTC" "2017-09-28 14:36:40 UTC" [5] "2017-09-28 14:36:50 UTC" "2017-09-28 14:37:00 UTC" [1] NA NA NA NA NA NA [1] 33786 [1] "Average Date / Time for slice RF01 = 2017-09-28 20:33:57.3844375610352" [1] "sum(lsel) = 2596" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 4.859 812.283 [1] 4.859 812.283 [1] 187.717 995.141 [1] 0 999999 [1] "no level flight between 275 and 375 hPa" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM3 RF01 O2_AO2 range = -642.68,-592.91" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1709/AO2_DC8_20170928_R4.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 148176 items [1] 1 3705 37044 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 271 271 271 271 271 271 [1] 52570 52580 52590 52600 52610 52620 [1] "2017-09-28 14:36:10 UTC" "2017-09-28 14:36:20 UTC" [3] "2017-09-28 14:36:30 UTC" "2017-09-28 14:36:40 UTC" [5] "2017-09-28 14:36:50 UTC" "2017-09-28 14:37:00 UTC" [1] NA NA NA NA NA NA [1] 34274 [1] "Average Date / Time for slice RF01 = 2017-09-28 20:34:21.1736032962799" [1] "sum(lsel) = 2667" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 4.859 812.283 [1] 4.859 812.283 [1] 187.717 995.141 [1] 0 999999 [1] "no level flight between 275 and 375 hPa" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM3 RF01 CO2_AO2 range = 400.77,405.4" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 132 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 132 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 132 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 132 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 132 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 132 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 132 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 132 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 132 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 132 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"