[1] "2025-05-13 15:50:40 MDT" options [1,] "file" "170221a" [2,] "flight" "RF11" [3,] "project" "ATOM2" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "300" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "2" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "full" [48,] "o2caltype" "full" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "TRUE" [64,] "icartt" "lookup" [65,] "icarttrev" "1" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "170221a" [1] "Reading in flight and plotting intervals" Read 17 records [1] "Reading in /scr/raf/stephens/AO2DAT/170221a.mr" Read 11140 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.33 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.36 seconds" [1] "New JOGEST = 2.36 seconds" [1] "New VALVE SKIP = 25 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/170221a.hr" Read 44568 records [1] "HR FILE LENGTH NOT NSWITCH * MRDATA FILE LENGTH" [1] 11140 44566 [1] "HR FILE LENGTH NOT MULTIPLE OF NSWITCH" [1] 11140 44566 [1] "Converting hrdata statout" [1] "Tue May 13 03:50:40 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30762 description: HS CO2 = 385.36 O2 = -508.1" [1] "position 2 cylinder OK30761 description: LS CO2 = 419.93 O2 = -735.2" [1] "position 3 cylinder OK30772 description: LT CO2 = 393.41 O2 = -584.4" [1] "position 4 cylinder OK30770 description: WT CO2 = 398.32 O2 = -789.2" [1] "position 5 cylinder OK30766 description: LP CO2 = 398.98 O2 = -752.5" [1] 385.3578 419.9309 393.4139 398.3246 398.9834 [1] -508.1069 -735.1526 -584.4379 -789.1760 -752.4657 [1] "Nominal linear calibrations:" [1] "co2scl = 0.935 co2off = 10.47 o2scla = -0.049 o2offa = -46.9" [1] "(dV/V)/(dXO2/XO2) = -4.292" [1] "(dV/V)/d(O2/N2) = -3.394" [1] "Reading in very high resolution timeseries" Read 222800 records [1] 222800 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 03:50:41 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 03:50:42 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.394" [1] "o2scaleavenew_drelVdrelP = -4.292" [1] "median(o2scalenew) = -3.411" [1] "Empirical dV/V vs dP/P relationship =-2.518, r^2 =0.006, damping =0.587" [1] "Tue May 13 03:50:42 PM MDT 2025 done redoing corrections" [1] "NON-INTEGER NGASNUM IN JOGAVES AT:" [1] 9739 $icochar [1] "0" "52.973018" "52.973018" "0" "23:49:27" "17:44:56" [7] "52.750619" "52.771235" "52.788202" "52.812285" "52.827975" "52.847496" [13] "52.863004" "52.880519" "52.895661" "52.935252" "23:10:00" $ecochar [1] "367" "52.974660" "52.974660" "17:44:56" "367" "23:49:27" [7] "52.771235" "52.791121" "52.812285" "52.831259" "52.847496" "52.866106" [13] "52.880519" "52.899128" "52.935252" "52.992357" "52.973" $flag [1] "all" "donotreporto2" "donotreportco2" "LP" [5] "LP" "flight" "a" "b" [9] "c" "d" "e" "f" [13] "g" "h" "i" "j" [17] "MMS" $ico2 [1] 0.00000 52.97302 52.97302 0.00000 52.99267 52.73954 52.75062 52.77123 [9] 52.78820 52.81229 52.82798 52.84750 52.86300 52.88052 52.89566 52.93525 [17] 52.96528 $eco2 [1] 367.00000 52.97466 52.97466 52.73954 367.00000 52.99267 52.77123 [8] 52.79112 52.81229 52.83126 52.84750 52.86611 52.88052 52.89913 [15] 52.93525 52.99236 52.97300 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 9738 9740 52.97362 6.786856 -0.00106855 0.01015855 0.01015855 9740 9739 9741 52.97365 6.798517 -0.00044220 0.01019705 0.01019705 9741 9740 9743 52.97369 6.785320 -0.00097650 0.01024970 0.01024970 9743 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 9738 10.5 3 44.0 7750.5 1 6.791098 6.790839 9739 10.5 2 44.5 3885.5 -1 6.802545 6.802437 9740 10.5 1 45.0 30.5 1 6.789562 6.789325 vuvsigpdprcorr 9738 6.788373 9739 6.799958 9740 6.786838 [1] 0.9736185 0.9736511 0.9736931 [,1] [,2] [,3] [1,] 0.973602 -1 3 [2,] 0.973612 1 3 [3,] 0.973618 1 3 [4,] 0.973624 1 3 [5,] 0.973632 1 3 [6,] 0.973643 -1 3 [7,] 0.973649 -1 3 [8,] 0.973660 -1 1 [9,] 0.973666 -1 1 [10,] 0.973671 -1 1 [11,] 0.973677 -1 1 [12,] 0.973687 1 1 [13,] 0.973693 1 1 [1] "JOGAVES DOES NOT MATCH" [1] "MASKING 20 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 03:51:10 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 3431975.2704 SECONDS" [1] "Tue May 13 03:51:10 PM MDT 2025 done recreating mr o2diffs" [1] "Removed 4 medium-rate record(s) with accumulation errors" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 98.007 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 86.799 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 87.372 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 18.792 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 4 [1] 69 [1] 89 [1] 89 [1] 89 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 82 52.70992 1862.56927 1033578.6 -1 [2,] 83 52.70995 1643.37544 1031627.0 1 [3,] 84 52.70998 1327.12814 1032957.5 -1 [4,] 86 52.71003 887.83744 1032533.2 -1 [5,] 160 52.71206 825.96337 1031841.0 -1 [6,] 161 52.71209 1043.90515 1030967.6 1 [7,] 162 52.71211 1325.44239 1032382.8 -1 [8,] 164 52.71217 1669.14928 1032686.8 -1 [9,] 240 52.71418 1399.02489 1031708.6 -1 [10,] 468 52.72038 1734.55634 1029675.7 -1 [11,] 469 52.72040 1526.93354 1027854.5 1 [12,] 470 52.72043 1233.11033 1029084.3 -1 [13,] 472 52.72048 887.65543 1028748.9 -1 [14,] 546 52.72249 1314.55238 1028429.4 -1 [15,] 774 52.72871 1641.63750 1023308.9 -1 [16,] 775 52.72874 1453.70096 1021574.6 1 [17,] 776 52.72877 1195.78517 1022745.5 -1 [18,] 778 52.72882 886.85125 1022403.1 -1 [19,] 852 52.73084 1308.91823 1020150.8 -1 [20,] 1234 52.74124 1679.99987 1005004.1 -1 [21,] 1235 52.74127 1290.74896 1003259.7 1 [22,] 1236 52.74129 888.63371 1004107.0 -1 [23,] 1386 52.74539 1160.56876 999950.9 -1 [24,] 1387 52.74542 1476.40576 998738.9 1 [25,] 1388 52.74545 1785.67450 1000537.0 -1 [26,] 1536 52.74950 2337.33194 997225.2 -1 [27,] 1537 52.74952 2625.89526 994825.2 1 [28,] 1538 52.74955 2926.58268 997746.9 -1 [29,] 2108 52.76516 1441.69302 983512.0 -1 [30,] 2112 52.76527 1429.36253 983446.1 -1 [31,] 2113 52.76530 1114.26171 982001.6 1 [32,] 2114 52.76533 854.38976 982847.4 -1 [33,] 2188 52.76734 961.57500 981908.8 -1 [34,] 2189 52.76737 1359.27787 980907.1 1 [35,] 2190 52.76740 1643.74281 982537.6 -1 [36,] 3718 52.80918 1356.84389 991484.4 -1 [37,] 3798 52.81136 1702.94587 991826.3 -1 [38,] 3799 52.81139 1356.73796 990112.1 1 [39,] 3800 52.81142 1003.16833 991094.5 -1 [40,] 4996 52.84410 1407.54627 998393.1 -1 [41,] 5002 52.84426 1056.14610 998050.9 -1 [42,] 5078 52.84634 927.29211 997957.2 -1 [43,] 5079 52.84637 1284.19497 996994.3 1 [44,] 5080 52.84639 1624.89869 998631.6 -1 [45,] 5156 52.84847 1275.97595 997842.5 -1 [46,] 5234 52.85059 1704.23306 997716.3 -1 [47,] 5872 52.86801 1487.59620 998228.1 -1 [48,] 5952 52.87019 1627.89229 999006.5 -1 [49,] 5953 52.87022 1249.24061 997381.2 1 [50,] 5954 52.87024 899.40820 998289.1 -1 [51,] 6242 52.87810 1197.94148 1000918.0 -1 [52,] 6248 52.87826 856.57393 1000558.0 -1 [53,] 6322 52.88028 930.75869 1000455.1 -1 [54,] 6323 52.88031 1302.36993 999489.1 1 [55,] 6324 52.88034 1651.43571 1001154.5 -1 [56,] 7744 52.91920 1643.63268 1001049.0 -1 [57,] 7818 52.92122 1693.21168 1001102.9 -1 [58,] 7819 52.92125 1344.72409 999384.7 1 [59,] 7820 52.92127 971.86272 1000347.5 -1 [60,] 8674 52.94456 1226.21513 1006004.7 -1 [61,] 8754 52.94675 805.38883 1006088.9 -1 [62,] 8755 52.94677 1147.98499 1005264.2 1 [63,] 8756 52.94680 1515.51485 1006833.4 -1 [64,] 9330 52.96253 1308.09356 1005517.0 1 [65,] 9331 52.96260 1655.42231 1005167.8 1 [66,] 9332 52.96263 1497.56938 1006850.1 -1 [67,] 9333 52.96266 1306.86892 1005510.9 1 [68,] 9348 52.96308 1290.37107 1006749.8 -1 [69,] 9741 52.97383 1561.53734 1006195.2 -1 [70,] 9742 52.97386 601.08160 1004601.2 1 [71,] 9743 52.97389 -556.88175 1003979.4 -1 [72,] 9744 52.97391 -1189.32639 1004609.3 1 [73,] 9745 52.97394 -1324.17965 1003282.2 -1 [74,] 9746 52.97397 -839.88703 1004621.8 1 [75,] 9747 52.97400 89.28406 1004797.2 -1 [76,] 9748 52.97403 1331.45621 1004656.1 1 [77,] 9749 52.97405 2450.61813 1007229.1 -1 [78,] 9751 52.97411 2919.53354 1007661.3 -1 [79,] 9752 52.97414 2252.70395 1004736.9 1 [80,] 9753 52.97416 1411.69475 1006133.5 -1 [81,] 9754 52.97419 850.97620 1004746.1 1 [82,] 9755 52.97422 561.66649 1005318.0 -1 [83,] 10431 52.99271 1604.83311 1013081.6 -1 [84,] 10911 53.00576 1648.94469 1013823.7 -1 [85,] 10912 53.00579 1277.63439 1012135.6 1 [86,] 10913 53.00582 909.51965 1013050.4 -1 [87,] 11063 53.00990 1203.04681 1012730.2 -1 [88,] 11064 53.00992 1475.89545 1011485.1 1 [89,] 11065 53.00995 1737.56230 1013256.0 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 6906 52.89626 321.894 [2,] 7035 52.89979 11024.530 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 98.007 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 57.976 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 56.164 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 18.792 PER MEG" [1] "Screened 1 O2 and CO2 values when pdsp not controlling" [1] 385.3578 419.9309 393.4139 398.3246 398.9834 [1] -508.1069 -735.1526 -584.4379 -789.1760 -752.4657 [1] "Nominal linear calibrations:" [1] "co2scl = 0.935 co2off = 10.47 o2scla = -0.049 o2offa = -47.5" [1] "(dV/V)/(dXO2/XO2) = -4.279" [1] "(dV/V)/d(O2/N2) = -3.383" [1] "Finding cal and sample periods" [1] "Median Cal: 2.95 minutes" [1] "Average Cal: 3.29 minutes" [1] "Shortest Cal: 2.92 minutes" [1] "Longest Cal: 15.19 minutes" [1] "Removed 3 calibration period(s) with less than 30 seconds of data" [1] "at: 14" [1] "at: 42" [1] "at: 47" [1] "Reading in aircraft data" [1] "Reading /scr/raf/stephens/HUMERGE/ATOM2/MMS/MMS-1HZ_DC8_20170221_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 17 items Read 17 items Read 1 item Read 1 item Read 18 items Read 375192 items [1] "Reading /scr/raf/stephens/HUMERGE/ATOM2/MMS/MMS-20Hz_DC8_20170221_R0.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 25 items Read 25 items Read 1 item Read 1 item Read 26 items Read 10855780 items [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.00277" [1] "HS CO2 vs. PACAB: m = -0.00114, r^2 = 0.04" [1] "LS CO2 vs. PACAB: m = -0.00439, r^2 = 0.36" [1] "HS+LS LIH2O vs. PACAB: m = -0.000247" [1] "HS LIH2O vs. PACAB: m = -0.000238, r^2 = 0.98" [1] "LS LIH2O vs. PACAB: m = -0.000255, r^2 = 0.91" [1] "HS+LS CO2 vs. LIH2O: m = 15.5" [1] "HS CO2 vs. LIH2O: m = 9.4, r^2 = 0.12" [1] "LS CO2 vs. LIH2O: m = 21.6, r^2 = 0.58" [1] "APCO2 vs. PACAB: m = -0.0522, r^2 = 0.28" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 0.183" [1] "HS O2 vs. PACAB: m = 0.199, r^2 = 0.63" [1] "LS O2 vs. PACAB: m = 0.168, r^2 = 0.26" [1] "HS+LS O2 vs. LIH2O: m = -828" [1] "HS O2 vs. LIH2O: m = -910, r^2 = 0.75" [1] "LS O2 vs. LIH2O: m = -745, r^2 = 0.37" [1] "HS+LS O2 vs. PAO2: m = -20.4" [1] "HS O2 vs. PAO2: m = -23.2, r^2 = 0.54" [1] "LS O2 vs. PAO2: m = -17.6, r^2 = 0.3" [1] "HS+LS O2 vs. TPBOX: m = 5.24" [1] "HS O2 vs. TPBOX: m = 3.54, r^2 = 0.16" [1] "LS O2 vs. TPBOX: m = 6.94, r^2 = 0.74" [1] "APO vs. PACAB: m = 0.867, r^2 = 0.28" [1] "APO vs. PAO2: m = -133, r^2 = 0.14" [1] "APO vs. TPBOX: m = 26.5, r^2 = 0.08" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 0.29, r^2 = 0.07" [1] "LS CO2 vs. LiCor Cell P: m = 0.0708, r^2 = 0" [1] "HS CO2 vs. CO2 Vol P: m = 0.61, r^2 = 0.43" [1] "LS CO2 vs. CO2 Vol P: m = 0.715, r^2 = 0.68" [1] "HS CO2 vs. SLOPE: m = -0.722, r^2 = 0.19" [1] "LS CO2 vs. SLOPE: m = -0.195, r^2 = 0.02" [1] "HS O2 vs. O2 Vol P: m = -24.6, r^2 = 0.56" [1] "LS O2 vs. O2 Vol P: m = -17.8, r^2 = 0.31" [1] "HS O2 vs. O2 Cell T: m = 9.85, r^2 = 0.22" [1] "LS O2 vs. O2 Cell T: m = 10.1, r^2 = 0.21" [1] "HS O2 vs. CO2 Vol P: m = -20.4, r^2 = 0.36" [1] "LS O2 vs. CO2 Vol P: m = -22.8, r^2 = 0.4" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = 0.28, r^2 = 0.01" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = 5.03, r^2 = 0.03" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -20.4, r^2 = 0.36" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -22.8, r^2 = 0.4" [1] "HS O2 vs. LIH2O: m = -817, r^2 = 0.58" [1] "LS O2 vs. LIH2O: m = -715, r^2 = 0.33" [1] "HS O2 vs. SLOPE: m = -0.544, r^2 = 0.03" [1] "LS O2 vs. SLOPE: m = -0.301, r^2 = 0" [1] "HS CO2 vs. Time: m = 29.888, r^2 = 0.88" [1] "LS CO2 vs. Time: m = 29.79, r^2 = 0.91" [1] "HS CO2 vs. Cylinder T: m = 0.878, r^2 = 0.01" [1] "LS CO2 vs. Cylinder T: m = -1.008, r^2 = 0.041" [1] "HS CO2 vs. Regulator T: m = 0.012, r^2 = 0" [1] "LS CO2 vs. Regulator T: m = -0.142, r^2 = 0.116" [1] "HS CO2 vs. Ref. Volumes T: m = 0.017, r^2 = 0" [1] "LS CO2 vs. Ref. Volumes T: m = -0.441, r^2 = 0.139" [1] "HS CO2 vs. Manifold T: m = -0.208, r^2 = 0.19" [1] "LS CO2 vs. Manifold T: m = -0.269, r^2 = 0.468" [1] "HS CO2 vs. Pump Box T: m = -0.041, r^2 = 0.02" [1] "LS CO2 vs. Pump Box T: m = -0.069, r^2 = 0.122" [1] "HS O2 vs. Cylinder T: m = 127.228, r^2 = 0.2" [1] "LS O2 vs. Cylinder T: m = 153.592, r^2 = 0.549" [1] "HS O2 vs. Regulator T: m = 16.48, r^2 = 0.8" [1] "LS O2 vs. Regulator T: m = 12.481, r^2 = 0.512" [1] "HS O2 vs. Ref. Volumes T: m = 23.339, r^2 = 0.34" [1] "LS O2 vs. Ref. Volumes T: m = 21.354, r^2 = 0.188" [1] "HS O2 vs. Manifold T: m = 11.518, r^2 = 0.43" [1] "LS O2 vs. Manifold T: m = 11.031, r^2 = 0.452" [1] "HS O2 vs. Pump Box T: m = 4.865, r^2 = 0.19" [1] "LS O2 vs. Pump Box T: m = 7.026, r^2 = 0.723" [1] "HS CO2 vs. WT P: m = -0.003, r^2 = 0.18" [1] "LS CO2 vs. WT P: m = -0.004, r^2 = 0.275" [1] "HS CO2 vs. SP P: m = -0.00273, r^2 = 0.21" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.007, r^2 = 0.15" [1] "HS CO2 vs. SP P comb with PACAB: m = -0.01, r^2 = 0.15" [1] "LS CO2 vs. SP P: m = -0.00345, r^2 = 0.33" [1] "LS CO2 vs. PACAB comb with SP P: m = -0.034, r^2 = 0.42" [1] "LS CO2 vs. SP P comb with PACAB: m = 0.028, r^2 = 0.42" [1] "HS CO2 vs. WT FL: m = -0.061, r^2 = 0.09" [1] "LS CO2 vs. WT FL: m = -0.123, r^2 = 0.435" [1] "HS CO2 vs. SP FL: m = 0.132, r^2 = 0.13" [1] "LS CO2 vs. SP FL: m = -0.009, r^2 = 0.001" [1] "HS O2 vs. SLPDIFF: m = -1.52, r^2 = 0.4" [1] "LS O2 vs. SLPDIFF: m = -3.423, r^2 = 0.761" [1] "HS O2 vs. WT P: m = 0.163, r^2 = 0.44" [1] "LS O2 vs. WT P: m = 0.113, r^2 = 0.14" [1] "HS O2 vs. SP P: m = 0.188, r^2 = 0.51" [1] "LS O2 vs. SP P: m = 0.155, r^2 = 0.23" [1] "HS O2 vs. WT FL: m = 6.358, r^2 = 0.73" [1] "LS O2 vs. WT FL: m = 4.735, r^2 = 0.368" [1] "HS O2 vs. SP FL: m = -5.666, r^2 = 0.17" [1] "LS O2 vs. SP FL: m = -0.533, r^2 = 0.002" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): -25.32, 68.98" [1] "Empirical LP O2 lag flow(s): 98.4, 96" [1] "Empirical LP CO2 lag time(s): -22.99, 52.22" [1] "Empirical LP CO2 lag flow(s): 98.4, 96" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.81" [1] "Median all HS CO2 SD = 0.81" [1] "Median all LS CO2 SD = 0.81" [1] "Median all LT CO2 SD = 0.8" [1] "Median all WT CO2 SD = 0.82" [1] "Median all HS or LS CO2 SD = 0.81" [1] "Median all cal O2 SD = 1.95" [1] "Median all HS O2 SD = 1.74" [1] "Median all LS O2 SD = 1.97" [1] "Median all LT O2 SD = 1.75" [1] "Median all WT O2 SD = 1.55" [1] "Median all HS or LS O2 SD = 1.94" [1] "Median all cal CO2 Slope = -0.04" [1] "Median all HS CO2 Slope = -0.02" [1] "Median all LS CO2 Slope = 0.01" [1] "Median all LT CO2 Slope = -0.14" [1] "Median all WT CO2 Slope = -0.15" [1] "Median all HS or LS CO2 Slope = -0.01" [1] "Median all cal O2 Slope = -0.08" [1] "Median all HS O2 Slope = -0.5" [1] "Median all LS O2 Slope = -0.38" [1] "Median all LT O2 Slope = 0.01" [1] "Median all WT O2 Slope = 0.19" [1] "Median all HS or LS O2 Slope = -0.38" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 4.67 per meg" [1] "Initial O2 Calibration Offset = -3.26 per meg" [1] "SD of O2 Calibration (post-takeoff) = 4.59 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = -9.24 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = -2.94 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using ATom2 inlet volumes" [1] "before any lag: 61140.01 87425.91" [1] "Time lag adjustments = 2 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 48.8 at 97.6 sccm" [1] "Median O2 delay + tlagff = 49.5 at 97.6 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 46.6 at 97.6 sccm" [1] "Median O2 delay from 3-way + tlagff = 47.4 at 97.6 sccm" [1] "after calc and ff lag: 61088.41 87384.88" [1] "2025-05-13 15:51:44 MDT" [1] "Calculating 1-sec interpolated values" [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] -11.7777010 -10.4421254 8.4966297 7.3927471 7.3927471 4.2358228 [7] -5.3398787 -4.4649198 -2.9072484 -2.9072484 8.2501400 8.2501400 [13] 7.9015063 7.1498457 -3.3106771 -4.8570272 -4.8570272 -4.8570272 [19] -6.3305444 -10.9409118 -10.7568083 -10.7568083 -10.7568083 -10.4651265 [25] -10.4651265 -9.8917195 -9.0982684 -15.7172608 -15.7172608 -15.7172608 [31] -15.4321380 -13.0676116 -11.9164706 -11.7911977 -11.7911977 -2.9241229 [37] 2.1521351 3.1561479 3.1561479 2.3447337 0.5634907 0.1053697 [43] -5.9751175 -9.4251795 -15.4489020 -15.4489020 -16.1382559 -18.1820697 [49] -8.9941528 1.8589367 3.0788409 3.0788409 6.9671878 6.6258134 [55] 6.6258134 6.6258134 1.0397974 -12.6540464 -12.6769656 -12.6769656 [61] -12.3494436 -10.7882897 -10.0005138 -9.9355152 -9.9355152 -14.4676979 [67] -14.5915056 -16.4456957 -17.2051738 -12.6536004 -12.6536004 -6.6398433 [73] -6.4019040 -7.7786719 -7.7627942 -7.7542109 -7.7542109 -3.7369029 [79] -1.9740014 -1.9740014 -10.2715231 -9.0659418 -2.5860383 -7.8581476 [85] -7.7277592 -6.0824260 -4.2798325 -3.0285678 -3.0285678 -12.9965754 [91] -25.0504302 -24.0064261 -21.4904360 -21.4904360 -20.4268492 -20.3136757 [97] -20.3136757 -19.7924740 -18.0467614 -17.3044881 -17.3044881 -17.3044881 [103] -18.1827375 -18.0621336 -18.0621336 -18.0621336 -18.0621336 -18.2005933 [109] -18.3146344 -18.3146344 -18.3146344 -12.6499697 -14.7418893 -15.0550239 [115] -15.0550239 -22.5241947 -22.2797788 -13.9868587 -8.8988359 6.6865319 [121] 6.6865319 6.6337822 3.0246142 0.2050608 0.3818397 0.3818397 [127] -1.0731065 -3.2494884 -2.9531789 -2.9531789 -2.9531789 -2.9531789 [133] -11.4026203 -8.0257983 -2.8937758 -1.0480647 7.7353146 7.7353146 [139] 7.7353146 7.3073649 8.2376254 5.9797171 4.2191545 3.6692372 [145] -2.1639674 -5.4336682 -5.9332920 -9.1093285 -11.0546148 -6.9627666 [151] -6.9627666 -6.9627666 -4.8293312 4.7396688 4.7396688 4.7396688 [157] 4.7396688 -2.0120270 -4.3921640 -5.2376257 -5.5791867 -3.4241136 [163] -3.4241136 -3.4241136 -3.6479089 -14.8589251 -22.4610978 -22.4658107 [169] -22.4658107 -19.4324620 -6.3282831 -11.6730707 -11.6730707 -11.6730707 [175] -20.2986287 -20.7361401 -24.7187966 -25.4445119 -10.2647586 -10.2647586 [181] -6.3835626 0.2380466 -12.2550919 -13.0811655 -13.4455799 -14.9356719 [187] -14.3837094 -14.0934337 -10.5193571 -8.0346950 -8.4239199 -10.4025036 [193] -15.1760761 -17.0338092 -17.0338092 -16.9771565 -17.0417818 -19.2780763 [199] -20.3849634 -22.3336386 -22.3336386 -22.2953652 -20.4266127 -17.8769951 [205] -16.5937851 -16.5937851 -16.5937851 -15.7153677 -10.2743398 -6.9004422 [211] -6.9004422 -6.9004422 4.5068884 4.5068884 5.3762793 7.4357097 [217] 16.6732998 16.6732998 16.6732998 16.6732998 10.5495134 10.0915646 [223] 9.3946177 9.0089565 1.3389707 0.8401683 0.8401683 0.8401683 [229] 1.7112953 3.0365488 3.7568769 4.0864202 4.0864202 -8.5023732 [235] -8.5023732 -8.5023732 -8.9354444 -2.2337649 -2.3689483 -2.3689483 [241] -2.3689483 -18.4102182 -18.4102182 -17.8796236 -16.5048602 -3.0488445 [247] 2.3340459 2.3340459 2.3340459 0.7812156 -8.3402327 -10.7121892 [253] -12.0918155 -12.8554289 -10.9799328 -10.9799328 -10.9888970 -11.0105982 [259] -5.9569676 -8.6903904 -8.6903904 -8.6903904 -18.7942547 -18.7942547 [265] -20.5932686 -23.2982012 -18.2539762 -15.7202186 -15.7202186 -15.7202186 [271] -15.7199596 -13.1494724 -12.2679835 -12.2679835 -12.2679835 -13.2812753 [277] -13.2812753 -13.4429228 -13.7313775 -6.2812171 -6.4598120 -6.4598120 [283] -6.4598120 -10.2868424 -11.3934365 -10.4847144 -10.2534927 -9.8263976 [289] -5.0353072 -5.0353072 -6.2751274 -8.5715744 -15.7946020 -15.7946020 [295] -15.7946020 -15.7946020 -10.4713058 -7.8701966 -7.8701966 -7.8701966 [301] -3.6298935 -3.8110265 -4.2623300 -4.8035733 -8.0065124 -9.8178870 [307] -9.8178870 -9.8178870 -10.0486037 -10.9445250 -11.4910867 -11.4910867 [313] -11.4910867 -20.7196262 -14.8172208 -8.0827694 -8.0827694 -3.6019190 [319] -3.6019190 -3.6019190 -12.4099897 -23.4911718 -23.4911718 -23.4911718 [325] -23.4911718 -22.5311735 -23.0135223 -24.5364907 -25.4014158 -25.4607728 [331] -25.8875835 -25.6581276 -23.0934870 -11.2720115 -6.1820235 -6.1820235 [337] -6.1820235 -6.1820235 -13.2233740 -13.6104675 -13.6104675 -13.6104675 [343] -11.7225411 -11.7225411 -9.2014044 -6.8812006 -5.5364281 -5.0121790 [349] -5.0121790 -5.0121790 -4.8638658 -7.7664064 -7.3668114 -7.3668114 [355] -7.3668114 -13.4822154 -13.6353264 -15.9637781 -19.1242192 -17.7937229 [361] -17.7937229 -17.7937229 -17.7937229 [1] 39.92789 42.14659 44.51007 47.83700 50.83709 53.80776 56.76571 [8] 59.32402 62.45010 65.09530 66.31193 67.23602 68.47644 69.96817 [15] 72.27466 74.92205 77.17614 79.12170 81.05004 82.46811 83.90046 [22] 85.56538 86.77964 88.48671 90.23303 92.16865 94.29452 96.31540 [29] 98.03611 99.77539 101.65062 103.21140 105.48784 107.61319 110.34897 [36] 112.83486 115.80342 117.77444 119.61082 121.36411 123.13825 124.28818 [43] 125.55840 127.09848 128.37711 130.24170 132.72809 135.58159 138.60688 [50] 141.54044 144.30727 147.30515 149.58320 151.76864 154.15321 156.46134 [57] 158.80109 161.09315 163.20245 165.69047 167.56077 169.86847 171.85266 [64] 174.04809 176.14061 178.62815 180.96306 183.35243 185.87290 188.54149 [71] 191.39341 194.51794 197.96853 201.43788 204.82397 208.18675 211.87249 [78] 215.42033 219.15371 222.67944 226.16714 229.88696 233.56660 237.13680 [85] 240.68488 245.08747 248.76556 252.45534 256.10375 259.54733 262.57006 [92] 265.63109 269.13061 272.20972 275.48680 278.40427 281.15718 283.61933 [99] 286.28633 288.44719 290.84449 293.26166 295.60158 297.70151 299.50927 [106] 301.23405 302.83230 304.42805 306.12211 307.63404 309.56718 310.94482 [113] 312.65567 314.16338 315.57616 316.75466 318.48395 319.85104 321.26722 [120] 322.65419 323.89151 325.47142 326.84508 328.32082 329.76470 330.97322 [127] 332.59240 333.67796 334.45720 335.18213 335.87265 336.52571 337.27451 [134] 338.01123 338.71022 339.73488 340.46905 341.21178 341.96235 342.74357 [141] 343.47137 344.14711 344.69658 345.51979 346.14865 346.89060 347.68182 [148] 348.67127 349.63291 350.53070 351.65519 352.70044 353.78348 354.94120 [155] 356.02941 357.13321 358.01499 359.23662 360.28711 361.35658 362.23581 [162] 363.28024 364.20302 365.20733 366.26253 367.41406 368.79809 370.20024 [169] 371.71357 373.09738 374.59919 375.97987 377.46496 378.81975 380.14289 [176] 381.56562 382.87888 384.46178 385.85266 387.35582 388.73416 390.18348 [183] 391.82217 393.29510 394.89462 396.45361 398.59694 400.39500 402.31808 [190] 404.17961 405.91493 407.98156 409.78919 411.61698 413.48126 415.26133 [197] 416.90571 418.76513 420.45342 422.08423 423.76062 425.30212 427.03689 [204] 428.94229 430.56019 432.27170 434.03729 435.40405 437.11426 438.38560 [211] 439.63569 441.03647 442.73943 443.96745 445.24023 446.46810 447.71949 [218] 448.92120 450.18125 451.43101 452.60768 453.78968 455.18187 456.46047 [225] 457.63898 458.64293 459.94776 461.06750 462.15342 463.23034 464.25703 [232] 465.33605 466.35453 467.42839 468.55421 469.59895 470.66835 471.88640 [239] 473.09211 474.14009 475.13150 476.09886 477.23082 478.40513 479.51638 [246] 480.53450 481.67736 482.85030 483.90025 485.03328 486.15554 487.30559 [253] 488.40370 489.58502 490.73851 491.86695 493.01458 493.93469 495.29854 [260] 496.42370 497.57484 498.75168 500.13720 501.31906 502.43631 503.57471 [267] 504.73285 505.84990 506.87530 508.12247 509.23806 510.34185 511.52172 [274] 512.60317 513.68779 514.81065 515.92730 517.11204 518.31320 519.51556 [281] 520.68502 521.98264 523.08258 524.34456 525.41747 526.76406 528.02182 [288] 529.13256 530.63741 531.79169 532.95952 534.12954 535.18023 536.50697 [295] 537.72755 538.95390 540.08944 541.42915 542.62337 543.82996 545.05077 [302] 546.29412 547.44946 548.56539 549.78980 550.94759 552.14899 553.26354 [309] 554.38625 555.62460 556.80749 557.92553 559.10962 560.47785 561.55369 [316] 562.74094 563.95567 565.13477 566.29300 567.40393 568.57625 569.64439 [323] 570.64311 571.91714 573.00483 574.09986 575.13706 576.26616 577.37540 [330] 578.48494 579.60687 580.67249 581.84677 582.91360 583.90129 585.12599 [337] 586.19101 587.23815 588.29946 589.51290 590.55063 591.47945 592.60243 [344] 593.67084 594.64045 595.71939 596.83438 597.83902 598.89586 599.82546 [351] 600.91486 601.92619 603.02614 604.02712 605.01385 606.03992 607.09913 [358] 608.06885 609.06131 610.09555 611.08156 612.02376 613.09536 [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Not reporting 57 O2 values from manual exclude period 52.973018 to 52.97466" [1] "Not reporting 57 APO values from manual exclude period 52.973018 to 52.97466" [1] "Not reporting 57 CO2 values from manual exclude period 52.973018 to 52.97466" [1] "Not reporting 57 APO values from manual exclude period 52.973018 to 52.97466" [1] "Not reporting 140 smoothed O2 values from manual exclude period 52.9724895096815 to 52.9741093340447" [1] "Not reporting 140 smoothed APO values from manual exclude period 52.9724895096815 to 52.9741093340447" [1] "Not reporting 140 smoothed CO2 values from manual exclude period 52.9724895096815 to 52.9741093340447" [1] "Not reporting 140 smoothed APO values from manual exclude period 52.9724895096815 to 52.9741093340447" [1] "Not reporting 140 smoothed O2 values from manual exclude period 52.9724895096815 to 52.9741093340447" [1] "Not reporting 140 smoothed APO values from manual exclude period 52.9724895096815 to 52.9741093340447" [1] "Not reporting 140 smoothed CO2 values from manual exclude period 52.9724895096815 to 52.9741093340447" [1] "Not reporting 140 smoothed APO values from manual exclude period 52.9724895096815 to 52.9741093340447" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1702/AO2_DC8_20170221_R5.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 83380 items [1] 11 2085 20845 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 26 26 26 26 26 26 [1] 61910 61920 61930 61940 61950 61960 [1] "2017-01-26 17:11:50 UTC" "2017-01-26 17:12:00 UTC" [3] "2017-01-26 17:12:10 UTC" "2017-01-26 17:12:20 UTC" [5] "2017-01-26 17:12:30 UTC" "2017-01-26 17:12:40 UTC" [1] -382.3889 -387.0900 -364.9280 -347.1720 -349.8190 -364.4600 [1] 27490 [1] "Average Date / Time for slice RF11 = 2017-02-21 20:46:50.0713360309601" [1] "sum(lsel) = 1542" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -5.413 803.550 [1] -5.413 803.550 [1] 196.450 1005.413 [1] 2.571429e-02 9.999990e+05 [1] "no level flight between 275 and 375 hPa" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM2 RF11 APO_AO2 range = -368.94,-316.55" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1702/AO2_DC8_20170221_R5.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 83380 items [1] 11 2085 20845 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 26 26 26 26 26 26 [1] 61910 61920 61930 61940 61950 61960 [1] "2017-01-26 17:11:50 UTC" "2017-01-26 17:12:00 UTC" [3] "2017-01-26 17:12:10 UTC" "2017-01-26 17:12:20 UTC" [5] "2017-01-26 17:12:30 UTC" "2017-01-26 17:12:40 UTC" [1] -770.4522 -755.1640 -715.8090 -685.0810 -683.6090 -687.0920 [1] 27498 [1] "Average Date / Time for slice RF11 = 2017-02-21 20:46:50.0713360309601" [1] "sum(lsel) = 1542" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -5.413 803.550 [1] -5.413 803.550 [1] 196.450 1005.413 [1] 2.571429e-02 9.999990e+05 [1] "no level flight between 275 and 375 hPa" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM2 RF11 O2_AO2 range = -690.81,-589.97" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1702/AO2_DC8_20170221_R5.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 83380 items [1] 11 2085 20845 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 26 26 26 26 26 26 [1] 61910 61920 61930 61940 61950 61960 [1] "2017-01-26 17:11:50 UTC" "2017-01-26 17:12:00 UTC" [3] "2017-01-26 17:12:10 UTC" "2017-01-26 17:12:20 UTC" [5] "2017-01-26 17:12:30 UTC" "2017-01-26 17:12:40 UTC" [1] 423.8729 420.0680 416.7962 414.3267 413.5424 411.4184 [1] 27706 [1] "Average Date / Time for slice RF11 = 2017-02-21 20:47:06.20711970329285" [1] "sum(lsel) = 1545" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -5.413 803.550 [1] -5.413 803.550 [1] 196.450 1005.413 [1] 2.571429e-02 9.999990e+05 [1] "no level flight between 275 and 375 hPa" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM2 RF11 CO2_AO2 range = 401.21,413.21" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 9 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 9 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 9 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 9 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 9 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 9 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 9 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 9 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 9 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 9 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 9 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"