[1] "2025-05-13 15:31:15 MDT" options [1,] "file" "170203a" [2,] "flight" "RF04" [3,] "project" "ATOM2" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "300" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "2" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "full" [48,] "o2caltype" "full" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "TRUE" [64,] "icartt" "lookup" [65,] "icarttrev" "1" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "170203a" [1] "Reading in flight and plotting intervals" Read 25 records [1] "Reading in /scr/raf/stephens/AO2DAT/170203a.mr" Read 16551 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.33 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.36 seconds" [1] "New JOGEST = 2.36 seconds" [1] "New VALVE SKIP = 25 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/170203a.hr" Read 66207 records [1] "HR FILE MATCHES" [1] "Converting hrdata statout" [1] "Tue May 13 03:31:15 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30762 description: HS CO2 = 385.36 O2 = -508.2" [1] "position 2 cylinder OK30761 description: LS CO2 = 419.93 O2 = -735" [1] "position 3 cylinder OK30772 description: LT CO2 = 393.41 O2 = -585.5" [1] "position 4 cylinder OK30769 description: WT CO2 = 398.36 O2 = -770.9" [1] "position 5 cylinder OK30770 description: LP CO2 = 398.31 O2 = -788.6" [1] 385.3576 419.9285 393.4149 398.3627 398.3135 [1] -508.1708 -734.9868 -585.4706 -770.9178 -788.6105 [1] "Nominal linear calibrations:" [1] "co2scl = 0.979 co2off = -2.32 o2scla = -0.047 o2offa = -33.7" [1] "(dV/V)/(dXO2/XO2) = -4.49" [1] "(dV/V)/d(O2/N2) = -3.55" [1] "Reading in very high resolution timeseries" Read 331020 records [1] 331020 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 03:31:16 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 03:31:18 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.55" [1] "o2scaleavenew_drelVdrelP = -4.49" [1] "median(o2scalenew) = -3.554" [1] "Empirical dV/V vs dP/P relationship =-2.375, r^2 =0.003, damping =0.529" [1] "Tue May 13 03:31:18 PM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "Plotting Jog Shapes" [1] "Tue May 13 03:32:10 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 750600.119231999 SECONDS" [1] "Tue May 13 03:32:10 PM MDT 2025 done recreating mr o2diffs" [1] "Removed 1 medium-rate record(s) with accumulation errors" [1] "Removed 140 medium-rate record(s) > eco or < ico" [1] "from: 1" [1] "to: 140" [1] "Screening 1 LiH2O values less than -10" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 186.7 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 190.21 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 190.7 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -18.702 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 12 [1] 130 [1] 157 [1] 157 [1] 157 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 14 34.75438 1098.33396 1024830.0 -1 [2,] 15 34.75441 1413.81646 1023705.4 1 [3,] 16 34.75444 1750.79340 1025578.5 -1 [4,] 92 34.75656 1413.48994 1026586.1 -1 [5,] 164 34.75855 1344.91229 1028070.1 -1 [6,] 165 34.75858 1572.85933 1026672.8 1 [7,] 166 34.75861 1833.46032 1028617.1 -1 [8,] 314 34.76272 1990.60174 1031203.5 -1 [9,] 315 34.76274 1664.18770 1029108.9 1 [10,] 316 34.76277 1314.08392 1030456.9 -1 [11,] 390 34.76483 1292.54003 1030417.5 -1 [12,] 391 34.76486 1665.50752 1029029.1 1 [13,] 392 34.76489 1985.29224 1031119.7 -1 [14,] 614 34.77105 2031.82145 1031452.3 -1 [15,] 615 34.77107 1600.26664 1029329.3 1 [16,] 616 34.77110 1192.19767 1030559.8 -1 [17,] 688 34.77306 1092.65207 1030682.7 -1 [18,] 689 34.77309 1378.80669 1029547.1 1 [19,] 690 34.77312 1700.49075 1031378.2 -1 [20,] 986 34.78121 2561.74231 1035693.2 -1 [21,] 990 34.78132 2014.88346 1035164.3 -1 [22,] 1061 34.78327 2065.20738 1033737.5 1 [23,] 1062 34.78329 2185.95649 1035870.8 -1 [24,] 1063 34.78332 2173.19325 1033421.8 1 [25,] 1064 34.78335 2050.65425 1035550.3 -1 [26,] 1066 34.78340 2013.03060 1035567.5 -1 [27,] 1067 34.78343 1766.41678 1033447.4 1 [28,] 1068 34.78346 1446.78550 1034932.5 -1 [29,] 1083 34.78387 1303.74379 1033544.7 1 [30,] 1084 34.78389 1273.16410 1035049.0 -1 [31,] 1085 34.78392 1124.31262 1033909.6 1 [32,] 1194 34.78688 1311.42598 1035863.5 -1 [33,] 1214 34.78742 1397.94513 1036003.2 -1 [34,] 1215 34.78744 2574.53452 1034520.4 1 [35,] 1216 34.78747 3406.57460 1038091.0 -1 [36,] 1217 34.78750 2801.09982 1034551.4 1 [37,] 1218 34.78753 1789.20705 1036450.6 -1 [38,] 1222 34.78763 2198.23524 1036904.9 -1 [39,] 1224 34.78769 2480.31204 1037199.4 -1 [40,] 1225 34.78771 2278.19989 1034614.3 1 [41,] 1226 34.78774 1643.31489 1036293.3 -1 [42,] 1227 34.78777 605.83472 1034578.5 1 [43,] 1228 34.78779 -275.34529 1034250.8 -1 [44,] 1230 34.78785 -278.44367 1034291.9 -1 [45,] 1231 34.78787 31.38620 1034564.3 1 [46,] 1232 34.78790 353.35454 1034952.3 -1 [47,] 1233 34.78793 676.64802 1034565.8 1 [48,] 1234 34.78795 970.76889 1035635.1 -1 [49,] 1235 34.78798 1250.69895 1034606.6 1 [50,] 1236 34.78801 1477.34065 1036182.1 -1 [51,] 2174 34.81367 1588.52489 1027321.9 -1 [52,] 2175 34.81369 1584.38748 1025627.7 1 [53,] 2176 34.81534 2000.10191 1026254.0 -1 [54,] 2177 34.81700 1569.56244 1022768.5 1 [55,] 2178 34.81703 1580.61753 1024367.7 -1 [56,] 2248 34.81894 1583.44709 1022892.8 -1 [57,] 2254 34.81910 1193.13156 1022341.8 -1 [58,] 2330 34.82119 1288.12689 1021040.9 -1 [59,] 2331 34.82122 1627.99646 1019661.7 1 [60,] 2332 34.82125 1947.81827 1021673.7 -1 [61,] 2482 34.82535 2050.77901 1020391.5 -1 [62,] 2483 34.82537 2472.49566 1018274.4 1 [63,] 2484 34.82540 2969.47477 1021501.8 -1 [64,] 2486 34.82545 2992.74722 1021208.7 -1 [65,] 2487 34.82548 2138.32726 1018273.1 1 [66,] 2488 34.82551 1182.98301 1019444.1 -1 [67,] 2490 34.82557 1057.34164 1019336.0 -1 [68,] 2491 34.82560 1690.92857 1018219.9 1 [69,] 2492 34.82563 2276.51267 1020596.5 -1 [70,] 2494 34.82568 2139.72415 1020426.0 -1 [71,] 2495 34.82571 1487.07727 1018243.0 1 [72,] 2496 34.82574 739.17900 1018977.4 -1 [73,] 3500 34.85378 1628.24617 1012496.7 -1 [74,] 3506 34.85395 2029.53169 1012862.1 -1 [75,] 3578 34.85591 1861.35501 1011918.8 -1 [76,] 3579 34.85594 1516.78683 1010023.2 1 [77,] 3580 34.85597 1185.43777 1011230.1 -1 [78,] 4660 34.88549 1599.13545 1002326.0 -1 [79,] 4666 34.88565 1221.41923 1001828.2 -1 [80,] 4740 34.88767 1132.79066 1001110.9 -1 [81,] 4741 34.88769 1454.30322 999934.4 1 [82,] 4742 34.88772 1821.56229 1001793.0 -1 [83,] 4816 34.88974 2062.79119 1001437.2 -1 [84,] 4817 34.88976 1835.97866 999338.8 1 [85,] 4818 34.88979 1581.84508 1000921.0 -1 [86,] 4892 34.89180 1437.21762 1001026.9 -1 [87,] 4893 34.89182 1690.34553 999567.7 1 [88,] 4894 34.89185 1957.48458 1001568.3 -1 [89,] 5986 34.92169 1636.58986 991484.0 -1 [90,] 5992 34.92186 1976.76634 991779.2 -1 [91,] 6066 34.92387 2043.06133 991009.8 -1 [92,] 6067 34.92390 1690.50954 988939.3 1 [93,] 6068 34.92393 1289.92674 990211.2 -1 [94,] 7658 34.96742 1605.84185 993940.8 -1 [95,] 7738 34.96960 1149.37786 992765.0 -1 [96,] 7739 34.96963 1527.23592 991602.1 1 [97,] 7740 34.96966 1925.71818 993543.2 -1 [98,] 9092 35.00661 1570.01624 993023.1 -1 [99,] 9098 35.00677 2046.28137 993597.4 -1 [100,] 9172 35.00879 1915.11307 993884.7 -1 [101,] 9173 35.00881 1558.91244 991997.0 1 [102,] 9174 35.00884 1222.36245 993247.5 -1 [103,] 10580 35.04726 1587.54348 999529.5 -1 [104,] 10660 35.04945 1253.28373 999643.2 -1 [105,] 10661 35.04948 1633.61390 998362.5 1 [106,] 10662 35.04950 1992.25200 1000414.1 -1 [107,] 10812 35.05358 2114.89999 1000687.2 -1 [108,] 10813 35.05361 1060.47384 998565.2 1 [109,] 10814 35.05363 -239.80904 998279.9 -1 [110,] 10816 35.05369 -720.99351 997851.9 -1 [111,] 10817 35.05371 264.01784 998567.9 1 [112,] 10818 35.05375 2006.78771 1000734.6 -1 [113,] 10819 35.05377 3321.44254 998629.7 1 [114,] 10820 35.05380 3991.45590 1002719.7 -1 [115,] 10821 35.05383 3742.88410 998662.1 1 [116,] 10822 35.05385 2688.10274 1001286.1 -1 [117,] 10823 35.05388 1198.06865 998602.1 1 [118,] 10824 35.05391 37.73645 998562.0 -1 [119,] 10826 35.05396 55.35711 998566.9 -1 [120,] 10827 35.05399 376.66608 998488.9 1 [121,] 10828 35.05402 671.85274 999189.1 -1 [122,] 12220 35.09212 1578.66340 997627.2 -1 [123,] 12226 35.09228 2050.81186 998061.6 -1 [124,] 12300 35.09428 2079.81856 998071.1 -1 [125,] 12301 35.09430 1711.28904 995956.5 1 [126,] 12302 35.09433 1317.05221 997262.2 -1 [127,] 13824 35.13561 1599.46326 995441.7 -1 [128,] 13830 35.13577 1222.09489 995096.3 -1 [129,] 13906 35.13783 1438.74441 996359.2 -1 [130,] 13907 35.13786 1739.59848 994884.2 1 [131,] 13908 35.13788 2005.61743 996925.3 -1 [132,] 13982 35.13990 2066.82294 998093.6 -1 [133,] 13983 35.13993 1813.95654 996020.7 1 [134,] 13984 35.13996 1546.38817 997589.4 -1 [135,] 14062 35.14207 1996.50839 999425.9 -1 [136,] 15064 35.16947 1513.94051 1005365.5 -1 [137,] 15070 35.16963 2006.55860 1005836.3 -1 [138,] 15659 35.18569 1442.69934 1002363.2 1 [139,] 15660 35.18572 1266.94341 1003863.6 -1 [140,] 15661 35.18574 1284.59895 1002830.6 1 [141,] 15662 35.18577 1467.00803 1004377.3 -1 [142,] 15736 35.18780 1523.70512 1004477.8 -1 [143,] 15742 35.18796 1636.53237 1004592.7 -1 [144,] 15743 35.18799 1361.26489 1002931.6 1 [145,] 15744 35.18802 842.04524 1003756.2 -1 [146,] 15746 35.18808 347.61632 1003273.6 -1 [147,] 15747 35.18810 513.29189 1002910.9 1 [148,] 15748 35.18813 845.47616 1003809.3 -1 [149,] 15749 35.18816 1169.55645 1002964.3 1 [150,] 15750 35.18819 1452.59703 1004454.3 -1 [151,] 15752 35.18824 1861.25671 1004868.9 -1 [152,] 16184 35.20001 2063.68743 1013011.6 -1 [153,] 16185 35.20004 1789.76689 1010915.5 1 [154,] 16186 35.20007 1460.21046 1012406.8 -1 [155,] 16336 35.20410 1440.92757 1016500.0 -1 [156,] 16337 35.20413 1674.81873 1015029.4 1 [157,] 16338 35.20416 1909.35787 1017026.8 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 2484 34.82540 464.831 [2,] 2485 34.82543 617.803 [3,] 2486 34.82545 495.209 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 169.098 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 100.477 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 96.79 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -18.702 PER MEG" [1] 385.3576 419.9285 393.4149 398.3627 398.3135 [1] -508.1708 -734.9868 -585.4706 -770.9178 -788.6105 [1] "Nominal linear calibrations:" [1] "co2scl = 0.985 co2off = -4.61 o2scla = -0.047 o2offa = -34.5" [1] "(dV/V)/(dXO2/XO2) = -4.463" [1] "(dV/V)/d(O2/N2) = -3.528" [1] "Finding cal and sample periods" [1] "Median Cal: 2.94 minutes" [1] "Average Cal: 2.82 minutes" [1] "Shortest Cal: 0.32 minutes" [1] "Longest Cal: 5 minutes" [1] "Removed 4 calibration period(s) with less than 30 seconds of data" [1] "at: 1" [1] "at: 13" [1] "at: 46" [1] "at: 54" [1] "Reading in aircraft data" [1] "Reading /scr/raf/stephens/HUMERGE/ATOM2/MMS/MMS-1HZ_DC8_20170203_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 17 items Read 17 items Read 1 item Read 1 item Read 18 items Read 613278 items [1] "Reading /scr/raf/stephens/HUMERGE/ATOM2/MMS/MMS-20Hz_DC8_20170203_R0.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 25 items Read 25 items Read 1 item Read 1 item Read 26 items Read 17733690 items [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.00425" [1] "HS CO2 vs. PACAB: m = -0.00429, r^2 = 0.67" [1] "LS CO2 vs. PACAB: m = -0.00421, r^2 = 0.7" [1] "HS+LS LIH2O vs. PACAB: m = -0.000216" [1] "HS LIH2O vs. PACAB: m = -0.000218, r^2 = 0.86" [1] "LS LIH2O vs. PACAB: m = -0.000215, r^2 = 0.87" [1] "HS+LS CO2 vs. LIH2O: m = 18.2" [1] "HS CO2 vs. LIH2O: m = 19.2, r^2 = 0.77" [1] "LS CO2 vs. LIH2O: m = 17.3, r^2 = 0.63" [1] "APCO2 vs. PACAB: m = -4e-04, r^2 = 0" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 0.0431" [1] "HS O2 vs. PACAB: m = 0.0525, r^2 = 0.1" [1] "LS O2 vs. PACAB: m = 0.0337, r^2 = 0.02" [1] "HS+LS O2 vs. LIH2O: m = -403" [1] "HS O2 vs. LIH2O: m = -380, r^2 = 0.3" [1] "LS O2 vs. LIH2O: m = -426, r^2 = 0.16" [1] "HS+LS O2 vs. PAO2: m = -9.9" [1] "HS O2 vs. PAO2: m = -15.4, r^2 = 0.39" [1] "LS O2 vs. PAO2: m = -4.4, r^2 = 0.01" [1] "HS+LS O2 vs. TPBOX: m = 3.57" [1] "HS O2 vs. TPBOX: m = 3.79, r^2 = 0.52" [1] "LS O2 vs. TPBOX: m = 3.36, r^2 = 0.19" [1] "APO vs. PACAB: m = 0.0073, r^2 = 0" [1] "APO vs. PAO2: m = -54.8, r^2 = 0.37" [1] "APO vs. TPBOX: m = 19.8, r^2 = 0.37" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = -1.02, r^2 = 0.01" [1] "LS CO2 vs. LiCor Cell P: m = 0.93, r^2 = 0.01" [1] "HS CO2 vs. CO2 Vol P: m = 0.743, r^2 = 0.73" [1] "LS CO2 vs. CO2 Vol P: m = 0.593, r^2 = 0.68" [1] "HS CO2 vs. SLOPE: m = 0.702, r^2 = 0.19" [1] "LS CO2 vs. SLOPE: m = -0.823, r^2 = 0.32" [1] "HS O2 vs. O2 Vol P: m = -16.1, r^2 = 0.4" [1] "LS O2 vs. O2 Vol P: m = -7.26, r^2 = 0.03" [1] "HS O2 vs. O2 Cell T: m = 7.27, r^2 = 0.13" [1] "LS O2 vs. O2 Cell T: m = -0.643, r^2 = 0" [1] "HS O2 vs. CO2 Vol P: m = -17.4, r^2 = 0.45" [1] "LS O2 vs. CO2 Vol P: m = -14.9, r^2 = 0.17" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = 9.3, r^2 = 0.13" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = 0.447, r^2 = 0" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -17.4, r^2 = 0.45" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -14.9, r^2 = 0.17" [1] "HS O2 vs. LIH2O: m = -390, r^2 = 0.26" [1] "LS O2 vs. LIH2O: m = -473, r^2 = 0.18" [1] "HS O2 vs. SLOPE: m = 0.435, r^2 = 0.02" [1] "LS O2 vs. SLOPE: m = 0.455, r^2 = 0.01" [1] "HS CO2 vs. Time: m = 15.272, r^2 = 0.89" [1] "LS CO2 vs. Time: m = 16.483, r^2 = 0.91" [1] "HS CO2 vs. Cylinder T: m = 2.186, r^2 = 0.17" [1] "LS CO2 vs. Cylinder T: m = 1.358, r^2 = 0.119" [1] "HS CO2 vs. Regulator T: m = -0.38, r^2 = 0.67" [1] "LS CO2 vs. Regulator T: m = -0.258, r^2 = 0.517" [1] "HS CO2 vs. Ref. Volumes T: m = -0.271, r^2 = 0.04" [1] "LS CO2 vs. Ref. Volumes T: m = 0.017, r^2 = 0" [1] "HS CO2 vs. Manifold T: m = -0.301, r^2 = 0.57" [1] "LS CO2 vs. Manifold T: m = -0.192, r^2 = 0.297" [1] "HS CO2 vs. Pump Box T: m = -0.18, r^2 = 0.79" [1] "LS CO2 vs. Pump Box T: m = -0.127, r^2 = 0.654" [1] "HS O2 vs. Cylinder T: m = -41.69, r^2 = 0.07" [1] "LS O2 vs. Cylinder T: m = -19.732, r^2 = 0.01" [1] "HS O2 vs. Regulator T: m = 7.303, r^2 = 0.28" [1] "LS O2 vs. Regulator T: m = 5.187, r^2 = 0.081" [1] "HS O2 vs. Ref. Volumes T: m = 6.702, r^2 = 0.03" [1] "LS O2 vs. Ref. Volumes T: m = -13.31, r^2 = 0.062" [1] "HS O2 vs. Manifold T: m = 7.82, r^2 = 0.43" [1] "LS O2 vs. Manifold T: m = 6.038, r^2 = 0.112" [1] "HS O2 vs. Pump Box T: m = 3.999, r^2 = 0.44" [1] "LS O2 vs. Pump Box T: m = 3.675, r^2 = 0.209" [1] "HS CO2 vs. WT P: m = -0.005, r^2 = 0.6" [1] "LS CO2 vs. WT P: m = -0.004, r^2 = 0.584" [1] "HS CO2 vs. SP P: m = -0.0045, r^2 = 0.64" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.005, r^2 = 0.6" [1] "HS CO2 vs. SP P comb with PACAB: m = -0.01, r^2 = 0.6" [1] "LS CO2 vs. SP P: m = -0.00412, r^2 = 0.76" [1] "LS CO2 vs. PACAB comb with SP P: m = 0.013, r^2 = 0.68" [1] "LS CO2 vs. SP P comb with PACAB: m = -0.017, r^2 = 0.68" [1] "HS CO2 vs. WT FL: m = -0.139, r^2 = 0.7" [1] "LS CO2 vs. WT FL: m = -0.104, r^2 = 0.575" [1] "HS CO2 vs. SP FL: m = 0.07, r^2 = 0.09" [1] "LS CO2 vs. SP FL: m = 0.107, r^2 = 0.26" [1] "HS O2 vs. SLPDIFF: m = -0.4, r^2 = 0.03" [1] "LS O2 vs. SLPDIFF: m = -1.576, r^2 = 0.356" [1] "HS O2 vs. WT P: m = 0.058, r^2 = 0.11" [1] "LS O2 vs. WT P: m = 0.057, r^2 = 0.048" [1] "HS O2 vs. SP P: m = 0.061, r^2 = 0.12" [1] "LS O2 vs. SP P: m = 0.056, r^2 = 0.045" [1] "HS O2 vs. WT FL: m = 3.154, r^2 = 0.41" [1] "LS O2 vs. WT FL: m = 2.646, r^2 = 0.143" [1] "HS O2 vs. SP FL: m = 0.238, r^2 = 0" [1] "LS O2 vs. SP FL: m = 0.194, r^2 = 0" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): 24.11, 35.27" [1] "Empirical LP O2 lag flow(s): 103.2, 99.4" [1] "Empirical LP CO2 lag time(s): 14.69, 23.52" [1] "Empirical LP CO2 lag flow(s): 103.2, 99.4" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.83" [1] "Median all HS CO2 SD = 0.87" [1] "Median all LS CO2 SD = 0.83" [1] "Median all LT CO2 SD = 0.83" [1] "Median all WT CO2 SD = 0.82" [1] "Median all HS or LS CO2 SD = 0.83" [1] "Median all cal O2 SD = 2.9" [1] "Median all HS O2 SD = 2.7" [1] "Median all LS O2 SD = 3.25" [1] "Median all LT O2 SD = 2.41" [1] "Median all WT O2 SD = 2.64" [1] "Median all HS or LS O2 SD = 2.8" [1] "Median all cal CO2 Slope = 0.04" [1] "Median all HS CO2 Slope = 0.03" [1] "Median all LS CO2 Slope = 0.03" [1] "Median all LT CO2 Slope = 0.15" [1] "Median all WT CO2 Slope = 0.14" [1] "Median all HS or LS CO2 Slope = 0.03" [1] "Median all cal O2 Slope = -0.13" [1] "Median all HS O2 Slope = -1.05" [1] "Median all LS O2 Slope = -0.66" [1] "Median all LT O2 Slope = 0.25" [1] "Median all WT O2 Slope = 0.37" [1] "Median all HS or LS O2 Slope = -0.84" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 9.8 per meg" [1] "Initial O2 Calibration Offset = 21.9 per meg" [1] "SD of O2 Calibration (post-takeoff) = 4.89 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = 25.42 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = 9.91 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using ATom2 inlet volumes" [1] "before any lag: 65147.5 104206.09" [1] "Time lag adjustments = 2 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 39.9 at 103 sccm" [1] "Median O2 delay + tlagff = 40.7 at 103 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 38.9 at 103 sccm" [1] "Median O2 delay from 3-way + tlagff = 39.7 at 103 sccm" [1] "after calc and ff lag: 65095.19 104163.53" [1] "2025-05-13 15:33:13 MDT" [1] "Calculating 1-sec interpolated values" [1] "Screened 266 1-Hz values because of data gaps at:" [1] 34.81330 34.81331 34.81332 34.81333 34.81334 34.81336 34.81337 34.81338 [9] 34.81339 34.81340 34.81341 34.81343 34.81344 34.81345 34.81346 34.81347 [17] 34.81348 34.81350 34.81351 34.81352 34.81353 34.81354 34.81355 34.81356 [25] 34.81358 34.81359 34.81360 34.81361 34.81362 34.81363 34.81365 34.81366 [33] 34.81367 34.81368 34.81369 34.81370 34.81372 34.81373 34.81374 34.81375 [41] 34.81376 34.81377 34.81378 34.81380 34.81381 34.81382 34.81383 34.81384 [49] 34.81385 34.81387 34.81388 34.81389 34.81390 34.81391 34.81392 34.81394 [57] 34.81395 34.81396 34.81397 34.81398 34.81399 34.81400 34.81402 34.81403 [65] 34.81404 34.81405 34.81406 34.81407 34.81409 34.81410 34.81411 34.81412 [73] 34.81413 34.81414 34.81416 34.81417 34.81418 34.81419 34.81420 34.81421 [81] 34.81422 34.81424 34.81425 34.81426 34.81427 34.81428 34.81429 34.81431 [89] 34.81432 34.81433 34.81434 34.81435 34.81436 34.81437 34.81439 34.81440 [97] 34.81441 34.81442 34.81443 34.81444 34.81446 34.81447 34.81448 34.81449 [105] 34.81450 34.81451 34.81453 34.81454 34.81455 34.81456 34.81457 34.81458 [113] 34.81459 34.81461 34.81462 34.81463 34.81464 34.81465 34.81466 34.81468 [121] 34.81469 34.81470 34.81471 34.81472 34.81473 34.81475 34.81476 34.81477 [129] 34.81478 34.81479 34.81480 34.81481 34.81494 34.81495 34.81497 34.81498 [137] 34.81499 34.81500 34.81501 34.81502 34.81503 34.81505 34.81506 34.81507 [145] 34.81508 34.81509 34.81510 34.81512 34.81513 34.81514 34.81515 34.81516 [153] 34.81517 34.81519 34.81520 34.81521 34.81522 34.81523 34.81524 34.81525 [161] 34.81527 34.81528 34.81529 34.81530 34.81531 34.81532 34.81534 34.81535 [169] 34.81536 34.81537 34.81538 34.81539 34.81541 34.81542 34.81543 34.81544 [177] 34.81545 34.81546 34.81547 34.81549 34.81550 34.81551 34.81552 34.81553 [185] 34.81554 34.81556 34.81557 34.81558 34.81559 34.81560 34.81561 34.81562 [193] 34.81564 34.81565 34.81566 34.81567 34.81568 34.81569 34.81571 34.81572 [201] 34.81573 34.81574 34.81575 34.81576 34.81578 34.81579 34.81580 34.81581 [209] 34.81582 34.81583 34.81584 34.81586 34.81587 34.81588 34.81589 34.81590 [217] 34.81591 34.81593 34.81594 34.81595 34.81596 34.81597 34.81598 34.81600 [225] 34.81601 34.81602 34.81603 34.81604 34.81605 34.81606 34.81608 34.81609 [233] 34.81610 34.81611 34.81612 34.81613 34.81615 34.81616 34.81617 34.81618 [241] 34.81619 34.81620 34.81622 34.81623 34.81624 34.81625 34.81626 34.81627 [249] 34.81628 34.81630 34.81631 34.81632 34.81633 34.81634 34.81635 34.81637 [257] 34.81638 34.81639 34.81640 34.81641 34.81642 34.81644 34.81645 34.81646 [265] 34.81647 34.81648 [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Not reporting 72 O2 values from manual exclude period 34.824498 to 34.826476" [1] "Not reporting 72 APO values from manual exclude period 34.824498 to 34.826476" [1] "Not reporting 42 O2 values from manual exclude period 34.833202 to 34.834389" [1] "Not reporting 42 APO values from manual exclude period 34.833202 to 34.834389" [1] "Not reporting 58 O2 values from manual exclude period 35.052761 to 35.054343" [1] "Not reporting 58 APO values from manual exclude period 35.052761 to 35.054343" [1] "Not reporting 58 O2 values from manual exclude period 35.122783 to 35.124365" [1] "Not reporting 58 APO values from manual exclude period 35.122783 to 35.124365" [1] "Not reporting 43 O2 values from manual exclude period 35.096673 to 35.09786" [1] "Not reporting 43 APO values from manual exclude period 35.096673 to 35.09786" [1] "Not reporting 110 O2 values from manual exclude period 34.958 to 34.961" [1] "Not reporting 110 APO values from manual exclude period 34.958 to 34.961" [1] "Not reporting 174 smoothed O2 values from manual exclude period 34.8239684112765 to 34.8259795835642" [1] "Not reporting 174 smoothed APO values from manual exclude period 34.8239684112765 to 34.8259795835642" [1] "Not reporting 103 smoothed O2 values from manual exclude period 34.8326801605034 to 34.8338730838739" [1] "Not reporting 103 smoothed APO values from manual exclude period 34.8326801605034 to 34.8338730838739" [1] "Not reporting 140 smoothed O2 values from manual exclude period 35.0522538428181 to 35.053876259295" [1] "Not reporting 140 smoothed APO values from manual exclude period 35.0522538428181 to 35.053876259295" [1] "Not reporting 138 smoothed O2 values from manual exclude period 35.1223259923105 to 35.1239142859976" [1] "Not reporting 138 smoothed APO values from manual exclude period 35.1223259923105 to 35.1239142859976" [1] "Not reporting 103 smoothed O2 values from manual exclude period 35.0962091408921 to 35.0974065450174" [1] "Not reporting 103 smoothed APO values from manual exclude period 35.0962091408921 to 35.0974065450174" [1] "Not reporting 260 smoothed O2 values from manual exclude period 34.9575388515177 to 34.9605489259792" [1] "Not reporting 260 smoothed APO values from manual exclude period 34.9575388515177 to 34.9605489259792" [1] "Not reporting 174 smoothed O2 values from manual exclude period 34.8239684112765 to 34.8259795835642" [1] "Not reporting 174 smoothed APO values from manual exclude period 34.8239684112765 to 34.8259795835642" [1] "Not reporting 103 smoothed O2 values from manual exclude period 34.8326801605034 to 34.8338730838739" [1] "Not reporting 103 smoothed APO values from manual exclude period 34.8326801605034 to 34.8338730838739" [1] "Not reporting 140 smoothed O2 values from manual exclude period 35.0522538428181 to 35.053876259295" [1] "Not reporting 140 smoothed APO values from manual exclude period 35.0522538428181 to 35.053876259295" [1] "Not reporting 138 smoothed O2 values from manual exclude period 35.1223259923105 to 35.1239142859976" [1] "Not reporting 138 smoothed APO values from manual exclude period 35.1223259923105 to 35.1239142859976" [1] "Not reporting 103 smoothed O2 values from manual exclude period 35.0962091408921 to 35.0974065450174" [1] "Not reporting 103 smoothed APO values from manual exclude period 35.0962091408921 to 35.0974065450174" [1] "Not reporting 260 smoothed O2 values from manual exclude period 34.9575388515177 to 34.9605489259792" [1] "Not reporting 260 smoothed APO values from manual exclude period 34.9575388515177 to 34.9605489259792" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1702/AO2_DC8_20170203_R5.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 136284 items [1] 4 3408 34071 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 26 26 26 26 26 26 [1] 61910 61920 61930 61940 61950 61960 [1] "2017-01-26 17:11:50 UTC" "2017-01-26 17:12:00 UTC" [3] "2017-01-26 17:12:10 UTC" "2017-01-26 17:12:20 UTC" [5] "2017-01-26 17:12:30 UTC" "2017-01-26 17:12:40 UTC" [1] -382.3889 -387.0900 -364.9280 -347.1720 -349.8190 -364.4600 [1] 27481 [1] "Average Date / Time for slice RF04 = 2017-02-03 23:40:21.1778380870819" [1] "sum(lsel) = 2581" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 3.390 783.593 [1] 3.390 783.593 [1] 216.407 996.610 [1] 1.110223e-16 9.999990e+05 [1] "highestmid = 724.955" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM2 RF04 APO_AO2 range = -343.86,-307.61" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1702/AO2_DC8_20170203_R5.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 136284 items [1] 4 3408 34071 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 26 26 26 26 26 26 [1] 61910 61920 61930 61940 61950 61960 [1] "2017-01-26 17:11:50 UTC" "2017-01-26 17:12:00 UTC" [3] "2017-01-26 17:12:10 UTC" "2017-01-26 17:12:20 UTC" [5] "2017-01-26 17:12:30 UTC" "2017-01-26 17:12:40 UTC" [1] -770.4522 -755.1640 -715.8090 -685.0810 -683.6090 -687.0920 [1] 27489 [1] "Average Date / Time for slice RF04 = 2017-02-03 23:40:21.1778380870819" [1] "sum(lsel) = 2581" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 3.390 783.593 [1] 3.390 783.593 [1] 216.407 996.610 [1] 1.110223e-16 9.999990e+05 [1] "highestmid = 724.955" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM2 RF04 O2_AO2 range = -638.34,-591.13" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1702/AO2_DC8_20170203_R5.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 136284 items [1] 4 3408 34071 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 26 26 26 26 26 26 [1] 61910 61920 61930 61940 61950 61960 [1] "2017-01-26 17:11:50 UTC" "2017-01-26 17:12:00 UTC" [3] "2017-01-26 17:12:10 UTC" "2017-01-26 17:12:20 UTC" [5] "2017-01-26 17:12:30 UTC" "2017-01-26 17:12:40 UTC" [1] 423.8729 420.0680 416.7962 414.3267 413.5424 411.4184 [1] 27702 [1] "Average Date / Time for slice RF04 = 2017-02-03 23:39:59.7775263786316" [1] "sum(lsel) = 2652" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 3.390 783.593 [1] 3.390 783.593 [1] 216.407 996.610 [1] 1.110223e-16 9.999990e+05 [1] "highestmid = 724.955" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM2 RF04 CO2_AO2 range = 403.7,407.77" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 23 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 23 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 23 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 23 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 23 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 23 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 23 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 23 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 23 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 23 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 23 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 23 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 23 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 23 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 23 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"