[1] "2025-05-13 15:28:39 MDT" options [1,] "file" "170201a" [2,] "flight" "RF03" [3,] "project" "ATOM2" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "300" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "2" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "TRUE" [36,] "tpboxforce" "80,80" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "full" [48,] "o2caltype" "full" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "TRUE" [64,] "icartt" "lookup" [65,] "icarttrev" "1" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "170201a" [1] "Reading in flight and plotting intervals" Read 24 records [1] "Reading in /scr/raf/stephens/AO2DAT/170201a.mr" Read 14343 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.33 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.37 seconds" [1] "New JOGEST = 2.37 seconds" [1] "New VALVE SKIP = 25 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/170201a.hr" Read 57376 records [1] "HR FILE LENGTH NOT NSWITCH * MRDATA FILE LENGTH" [1] 14343 57376 [1] "Converting hrdata statout" [1] "Tue May 13 03:28:40 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30762 description: HS CO2 = 385.36 O2 = -508.2" [1] "position 2 cylinder OK30761 description: LS CO2 = 419.93 O2 = -735" [1] "position 3 cylinder OK30772 description: LT CO2 = 393.42 O2 = -585.6" [1] "position 4 cylinder OK30769 description: WT CO2 = 398.36 O2 = -770.8" [1] "position 5 cylinder OK30770 description: LP CO2 = 398.31 O2 = -788.5" [1] 385.3575 419.9283 393.4150 398.3605 398.3123 [1] -508.1779 -734.9683 -585.5853 -770.8202 -788.5477 [1] "Nominal linear calibrations:" [1] "co2scl = 0.962 co2off = -10.02 o2scla = -0.056 o2offa = -149.1" [1] "(dV/V)/(dXO2/XO2) = -3.726" [1] "(dV/V)/d(O2/N2) = -2.946" [1] "Reading in very high resolution timeseries" Read 286860 records [1] 286860 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 03:28:40 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 03:28:43 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -2.946" [1] "o2scaleavenew_drelVdrelP = -3.726" [1] "median(o2scalenew) = -2.988" [1] "Empirical dV/V vs dP/P relationship =-2.522, r^2 =0.002, damping =0.677" [1] "Tue May 13 03:28:43 PM MDT 2025 done redoing corrections" [1] "NON-INTEGER NGAS IN JOGAVES AT:" [1] 4247 4584 13687 $icochar [1] "0" "0" "22:02:00" "22:17:10" "22:50:00" "28:24:15" [7] "33.163259" "32.839638" "32.839638" "32.868615" "32.897593" "32.918796" [13] "32.935758" "32.962144" "32.980520" "33.004314" "33.021041" "33.042950" [19] "33.058028" "33.079938" "33.097371" "33.112684" "33.144018" "33.159566" $ecochar [1] "367" "19:57:00" "22:02:10" "22:30:00" "22:56:00" "367" [7] "33.1645" "33.181005" "32.868615" "32.897593" "32.919031" "32.938349" [13] "32.962144" "32.983818" "33.004078" "33.023868" "33.042950" "33.062740" [19] "33.079938" "33.099727" "33.112684" "33.145902" "33.159566" "33.181005" $flag [1] "all" "LP" "screeno2" "LP" [5] "calbreak" "LP" "donotreporto2" "flight" [9] "a" "b" "c" "d" [13] "e" "f" "g" "h" [17] "i" "j" "k" "l" [21] "m" "n" "o" "p" $ico2 [1] 0.00000 0.00000 32.91806 32.92859 32.95139 33.18351 33.16326 32.83964 [9] 32.83964 32.86861 32.89759 32.91880 32.93576 32.96214 32.98052 33.00431 [17] 33.02104 33.04295 33.05803 33.07994 33.09737 33.11268 33.14402 33.15957 $eco2 [1] 367.00000 32.83125 32.91817 32.93750 32.95556 367.00000 33.16450 [8] 33.18100 32.86861 32.89759 32.91903 32.93835 32.96214 32.98382 [15] 33.00408 33.02387 33.04295 33.06274 33.07994 33.09973 33.11268 [22] 33.14590 33.15957 33.18100 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 4246 4248 32.92856 7.263898 -0.0008802 0.01465705 0.01465705 4248 4247 4249 32.92859 7.258392 -0.0009965 0.01466330 0.01466330 4249 4248 4250 32.92862 7.264342 -0.0009532 0.01467270 0.01467270 4250 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 4246 10.5 1.0 23.0 2730.5 1 7.270184 7.269991 4247 10.5 3.5 23.5 1375.5 -1 7.264739 7.264521 4248 10.5 6.0 24.0 20.5 1 7.270666 7.270457 vuvsigpdprcorr 4246 7.266775 4247 7.261305 4248 7.267237 [1] 0.9285592 0.9285867 0.9286152 [,1] [,2] [,3] [1,] 0.928543 -1 1 [2,] 0.928553 1 1 [3,] 0.928559 1 1 [4,] 0.928565 1 1 [5,] 0.928571 1 1 [6,] 0.928581 -1 1 [7,] 0.928586 -1 1 [8,] 0.928592 -1 6 [9,] 0.928599 -1 6 [10,] 0.928609 1 6 [11,] 0.928615 1 6 [12,] 0.928621 1 6 [13,] 0.928627 1 6 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 4583 4585 32.93747 7.315765 -0.00079510 0.01380105 0.01380105 4585 4584 4586 32.93749 7.320794 -0.00075460 0.01377170 0.01377170 4586 4585 4587 32.93752 7.316017 -0.00084705 0.01376350 0.01376350 4587 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 4583 10.5 6.00 24.00 6720.50 -1 7.321713 7.321537 4584 10.5 4.75 24.25 5054.25 1 7.326714 7.326547 4585 10.5 1.00 25.00 15.50 -1 7.321990 7.321802 vuvsigpdprcorr 4583 7.318486 4584 7.323500 4585 7.318759 [1] 0.9374660 0.9374905 0.9375151 [,1] [,2] [,3] [1,] 0.937451 1 6 [2,] 0.937461 -1 6 [3,] 0.937466 -1 6 [4,] 0.937471 -1 6 [5,] 0.937476 -1 6 [6,] 0.937485 1 6 [7,] 0.937490 1 6 [8,] 0.937496 1 6 [9,] 0.937501 1 1 [10,] 0.937510 -1 1 [11,] 0.937515 -1 1 [12,] 0.937520 -1 1 [13,] 0.937525 -1 1 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 13686 13688 33.18348 7.803270 -0.00131815 0.00983745 0.00983745 13688 13687 13689 33.18351 7.801029 -0.00119715 0.00940320 0.00940320 13689 13688 13690 33.18354 7.803059 -0.00068160 0.00927055 0.00927055 13690 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 13686 10.5 1.00 48.00 14470.50 1 7.808065 7.807758 13687 10.5 4.75 48.75 3626.75 -1 7.805584 7.805305 13688 10.5 6.00 49.00 25.50 1 7.807335 7.807176 vuvsigpdprcorr 13686 7.805464 13687 7.803113 13688 7.805014 [1] 1.183485 1.183511 1.183538 [,1] [,2] [,3] [1,] 1.183469 -1 1 [2,] 1.183479 1 1 [3,] 1.183484 1 1 [4,] 1.183490 1 1 [5,] 1.183496 1 1 [6,] 1.183505 -1 1 [7,] 1.183511 -1 6 [8,] 1.183517 -1 6 [9,] 1.183522 -1 6 [10,] 1.183532 1 6 [11,] 1.183538 1 6 [12,] 1.183544 1 6 [13,] 1.183549 1 6 [1] "NON-INTEGER NGASNUM IN JOGAVES AT:" [1] 4247 4584 13687 $icochar [1] "0" "0" "22:02:00" "22:17:10" "22:50:00" "28:24:15" [7] "33.163259" "32.839638" "32.839638" "32.868615" "32.897593" "32.918796" [13] "32.935758" "32.962144" "32.980520" "33.004314" "33.021041" "33.042950" [19] "33.058028" "33.079938" "33.097371" "33.112684" "33.144018" "33.159566" $ecochar [1] "367" "19:57:00" "22:02:10" "22:30:00" "22:56:00" "367" [7] "33.1645" "33.181005" "32.868615" "32.897593" "32.919031" "32.938349" [13] "32.962144" "32.983818" "33.004078" "33.023868" "33.042950" "33.062740" [19] "33.079938" "33.099727" "33.112684" "33.145902" "33.159566" "33.181005" $flag [1] "all" "LP" "screeno2" "LP" [5] "calbreak" "LP" "donotreporto2" "flight" [9] "a" "b" "c" "d" [13] "e" "f" "g" "h" [17] "i" "j" "k" "l" [21] "m" "n" "o" "p" $ico2 [1] 0.00000 0.00000 32.91806 32.92859 32.95139 33.18351 33.16326 32.83964 [9] 32.83964 32.86861 32.89759 32.91880 32.93576 32.96214 32.98052 33.00431 [17] 33.02104 33.04295 33.05803 33.07994 33.09737 33.11268 33.14402 33.15957 $eco2 [1] 367.00000 32.83125 32.91817 32.93750 32.95556 367.00000 33.16450 [8] 33.18100 32.86861 32.89759 32.91903 32.93835 32.96214 32.98382 [15] 33.00408 33.02387 33.04295 33.06274 33.07994 33.09973 33.11268 [22] 33.14590 33.15957 33.18100 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 4246 4248 32.92856 7.263898 -0.0008802 0.01465705 0.01465705 4248 4247 4249 32.92859 7.258392 -0.0009965 0.01466330 0.01466330 4249 4248 4250 32.92862 7.264342 -0.0009532 0.01467270 0.01467270 4250 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 4246 10.5 1.0 23.0 2730.5 1 7.270184 7.269991 4247 10.5 3.5 23.5 1375.5 -1 7.264739 7.264521 4248 10.5 6.0 24.0 20.5 1 7.270666 7.270457 vuvsigpdprcorr 4246 7.266775 4247 7.261305 4248 7.267237 [1] 0.9285592 0.9285867 0.9286152 [,1] [,2] [,3] [1,] 0.928543 -1 1 [2,] 0.928553 1 1 [3,] 0.928559 1 1 [4,] 0.928565 1 1 [5,] 0.928571 1 1 [6,] 0.928581 -1 1 [7,] 0.928586 -1 1 [8,] 0.928592 -1 6 [9,] 0.928599 -1 6 [10,] 0.928609 1 6 [11,] 0.928615 1 6 [12,] 0.928621 1 6 [13,] 0.928627 1 6 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 4583 4585 32.93747 7.315765 -0.00079510 0.01380105 0.01380105 4585 4584 4586 32.93749 7.320794 -0.00075460 0.01377170 0.01377170 4586 4585 4587 32.93752 7.316017 -0.00084705 0.01376350 0.01376350 4587 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 4583 10.5 6.00 24.00 6720.50 -1 7.321713 7.321537 4584 10.5 4.75 24.25 5054.25 1 7.326714 7.326547 4585 10.5 1.00 25.00 15.50 -1 7.321990 7.321802 vuvsigpdprcorr 4583 7.318486 4584 7.323500 4585 7.318759 [1] 0.9374660 0.9374905 0.9375151 [,1] [,2] [,3] [1,] 0.937451 1 6 [2,] 0.937461 -1 6 [3,] 0.937466 -1 6 [4,] 0.937471 -1 6 [5,] 0.937476 -1 6 [6,] 0.937485 1 6 [7,] 0.937490 1 6 [8,] 0.937496 1 6 [9,] 0.937501 1 1 [10,] 0.937510 -1 1 [11,] 0.937515 -1 1 [12,] 0.937520 -1 1 [13,] 0.937525 -1 1 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 13686 13688 33.18348 7.803270 -0.00131815 0.00983745 0.00983745 13688 13687 13689 33.18351 7.801029 -0.00119715 0.00940320 0.00940320 13689 13688 13690 33.18354 7.803059 -0.00068160 0.00927055 0.00927055 13690 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 13686 10.5 1.00 48.00 14470.50 1 7.808065 7.807758 13687 10.5 4.75 48.75 3626.75 -1 7.805584 7.805305 13688 10.5 6.00 49.00 25.50 1 7.807335 7.807176 vuvsigpdprcorr 13686 7.805464 13687 7.803113 13688 7.805014 [1] 1.183485 1.183511 1.183538 [,1] [,2] [,3] [1,] 1.183469 -1 1 [2,] 1.183479 1 1 [3,] 1.183484 1 1 [4,] 1.183490 1 1 [5,] 1.183496 1 1 [6,] 1.183505 -1 1 [7,] 1.183511 -1 6 [8,] 1.183517 -1 6 [9,] 1.183522 -1 6 [10,] 1.183532 1 6 [11,] 1.183538 1 6 [12,] 1.183544 1 6 [13,] 1.183549 1 6 [1] "JOGAVES DOES NOT MATCH" [1] "Plotting Jog Shapes" [1] "Tue May 13 03:29:24 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 2834699.758272 SECONDS" [1] "Tue May 13 03:29:24 PM MDT 2025 done recreating mr o2diffs" [1] "Removed 3 medium-rate record(s) with accumulation errors" [1] "Removed 146 medium-rate record(s) from calbreak period" [1] "from: 5106" [1] "to: 5251" [1] "O2 SCALE ESTIMATE CHANGED BY MORE THAN 10% IN FLIGHT" [1] 3.7394 4.2515 [1] -3.037070 -2.671217 [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 5044.847 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 5067.241 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 5067.863 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -13.611 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 64 [1] 164 [1] 192 [1] 192 [1] 196 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 76 32.81126 783.719268 997250.1 -1 [2,] 77 32.81129 361.449311 996364.3 1 [3,] 78 32.81133 -83.593633 996330.7 -1 [4,] 148 32.81333 -217.027192 995605.5 -1 [5,] 149 32.81336 110.746835 995742.7 1 [6,] 150 32.81339 461.992255 996307.7 -1 [7,] 220 32.81540 686.816519 995764.3 -1 [8,] 221 32.81543 452.109239 994965.9 1 [9,] 222 32.81546 225.832536 995233.3 -1 [10,] 285 32.81726 -26.922454 994096.7 1 [11,] 286 32.81729 77.537515 993933.0 -1 [12,] 287 32.81731 269.341047 993567.4 1 [13,] 288 32.81735 170.668398 993973.3 -1 [14,] 289 32.81738 -108.726546 994013.0 1 [15,] 291 32.81743 -605.271447 994194.1 1 [16,] 292 32.81746 -359.973471 993540.1 -1 [17,] 293 32.81749 207.393518 993469.7 1 [18,] 294 32.81752 482.777872 994055.0 -1 [19,] 299 32.81766 580.716415 993669.0 1 [20,] 300 32.81768 784.344703 994352.3 -1 [21,] 301 32.81771 1008.452987 993365.9 1 [22,] 302 32.81774 920.648168 994625.6 -1 [23,] 303 32.81777 773.934137 993843.4 1 [24,] 325 32.81841 666.853790 993476.1 1 [25,] 326 32.81844 784.766315 994140.0 -1 [26,] 327 32.81847 928.080060 993170.3 1 [27,] 440 32.82174 584.790290 991523.1 -1 [28,] 441 32.82177 182.592191 990870.2 1 [29,] 442 32.82180 -188.475815 990739.7 -1 [30,] 512 32.82381 73.324014 989357.6 -1 [31,] 513 32.82384 449.401389 989134.3 1 [32,] 514 32.82387 710.618031 989920.3 -1 [33,] 660 32.82819 602.201517 986398.6 -1 [34,] 726 32.83008 714.752374 983945.5 -1 [35,] 727 32.83010 309.288453 983109.9 1 [36,] 728 32.83013 -107.479577 982989.0 -1 [37,] 798 32.83214 -305.597219 979363.6 -1 [38,] 799 32.83216 25.353270 979521.0 1 [39,] 800 32.83219 404.826706 979943.3 -1 [40,] 995 32.83771 499.875939 969815.9 1 [41,] 996 32.83774 736.878999 970344.4 -1 [42,] 997 32.83777 911.395284 969235.1 1 [43,] 1045 32.83913 709.984956 967260.7 1 [44,] 1046 32.83916 846.693141 968000.8 -1 [45,] 1047 32.83919 884.101427 966954.3 1 [46,] 1049 32.83925 704.921113 967033.6 1 [47,] 1050 32.83928 1012.047380 967724.1 -1 [48,] 1051 32.83931 1208.611361 966429.3 1 [49,] 1052 32.83933 953.234843 967608.4 -1 [50,] 1053 32.83936 613.572163 966889.4 1 [51,] 1245 32.84484 70.667445 956886.6 1 [52,] 1246 32.84486 107.773093 956907.9 -1 [53,] 1247 32.84489 -94.405797 956528.4 1 [54,] 1248 32.84492 -372.452606 956179.9 -1 [55,] 1249 32.84495 -359.367019 956265.8 1 [56,] 1250 32.84498 -128.047451 956104.8 -1 [57,] 1251 32.84500 62.367265 955943.5 1 [58,] 1253 32.84506 -17.096615 955852.3 1 [59,] 1254 32.84509 -146.821773 955939.5 -1 [60,] 1255 32.84511 -80.367741 956230.2 1 [61,] 1287 32.84605 71.519041 954805.2 1 [62,] 1288 32.84608 40.904842 954809.3 -1 [63,] 1289 32.84611 -56.227733 954417.9 1 [64,] 1290 32.84614 -68.363486 954154.1 -1 [65,] 1291 32.84616 -82.425477 954017.1 1 [66,] 1292 32.84619 -273.420021 954121.1 -1 [67,] 1293 32.84622 -319.852956 954596.5 1 [68,] 1418 32.84983 -248.333660 949117.6 -1 [69,] 1419 32.84985 -475.838482 949164.7 1 [70,] 1420 32.84988 -533.178711 948489.1 -1 [71,] 1421 32.84991 -341.208817 948670.7 1 [72,] 1433 32.85027 -82.430159 948323.7 1 [73,] 1434 32.85030 -98.077300 948528.7 -1 [74,] 1435 32.85033 -237.870140 948738.1 1 [75,] 1900 32.86365 -465.791030 933748.4 -1 [76,] 1976 32.86578 -430.269723 931889.1 -1 [77,] 1977 32.86581 -731.392677 932221.6 1 [78,] 1978 32.86584 -961.285883 931380.0 -1 [79,] 2228 32.87287 -501.714575 925658.4 -1 [80,] 2234 32.87303 -933.760338 925111.6 -1 [81,] 2306 32.87502 -1185.027296 923975.9 -1 [82,] 2307 32.87505 -810.756019 925020.0 1 [83,] 2308 32.87508 -426.108225 924715.5 -1 [84,] 3849 32.91738 -670.412369 952567.4 1 [85,] 3850 32.91741 -611.322788 951981.0 -1 [86,] 3851 32.91753 -175.420112 952217.3 1 [87,] 3852 32.91756 -341.898620 952140.1 -1 [88,] 3853 32.91759 -553.013065 952592.9 1 [89,] 3962 32.92068 -768.006632 952347.5 -1 [90,] 4038 32.92280 -498.732424 953197.4 -1 [91,] 4039 32.92283 -880.067843 953607.0 1 [92,] 4040 32.92286 -1286.214488 952436.6 -1 [93,] 4244 32.92859 -781.930808 957634.8 -1 [94,] 4254 32.92887 -149.187902 958567.3 -1 [95,] 4255 32.92890 104.456492 958640.7 1 [96,] 4256 32.92893 318.455943 959069.1 -1 [97,] 4358 32.93182 4.172838 961080.5 -1 [98,] 4359 32.93185 343.948356 961000.2 1 [99,] 4360 32.93188 519.439047 961598.2 -1 [100,] 4361 32.93191 301.440634 961061.6 1 [101,] 4362 32.93193 -94.450103 961046.1 -1 [102,] 4364 32.93199 -547.252055 960649.6 -1 [103,] 4368 32.93210 -30.926245 961260.1 -1 [104,] 4370 32.93215 488.806905 961755.3 -1 [105,] 4372 32.93221 781.875010 962071.3 -1 [106,] 4374 32.93226 1039.641434 962389.1 -1 [107,] 4375 32.93229 1285.340849 961309.4 1 [108,] 4376 32.93232 1525.019277 962918.9 -1 [109,] 4378 32.93237 1695.876932 963135.9 -1 [110,] 4379 32.93240 1385.552160 961440.9 1 [111,] 4380 32.93243 874.900003 962307.8 -1 [112,] 4381 32.93247 226.405770 961366.1 1 [113,] 4382 32.93250 137.938483 961601.2 -1 [114,] 4383 32.93253 466.088152 961412.6 1 [115,] 4384 32.93256 759.063137 962291.2 -1 [116,] 4544 32.93659 -184.090132 964844.7 -1 [117,] 4545 32.93661 -673.976689 964987.3 1 [118,] 4546 32.93664 -1264.763162 963795.4 -1 [119,] 4547 32.93666 -1776.045332 964998.6 1 [120,] 4548 32.93668 -2122.349431 963001.4 -1 [121,] 4552 32.93678 -1838.891842 963354.7 -1 [122,] 4562 32.93703 -710.143074 964713.4 -1 [123,] 5104 32.95134 -635.846082 977156.5 -1 [124,] 5105 32.95137 -646.545020 977722.3 1 [125,] 5106 32.95557 -765.279972 979519.3 -1 [126,] 5107 32.95560 -788.180016 980203.2 1 [127,] 5374 32.96315 -910.106416 979540.3 -1 [128,] 5380 32.96332 -1415.849197 978969.0 -1 [129,] 5450 32.96529 -1493.599475 978659.1 -1 [130,] 5451 32.96532 -1089.614200 980053.2 1 [131,] 5452 32.96535 -682.714291 979480.4 -1 [132,] 5526 32.96744 -1130.438902 978966.8 -1 [133,] 5596 32.96939 -1193.313492 979305.5 -1 [134,] 5597 32.96942 -934.809109 980414.5 1 [135,] 5598 32.96945 -656.271723 979832.4 -1 [136,] 6772 33.00248 -641.529494 999658.4 -1 [137,] 6850 33.00468 -476.992445 998496.4 -1 [138,] 6851 33.00471 -957.616980 998904.6 1 [139,] 6852 33.00473 -1366.754691 997591.6 -1 [140,] 8230 33.04116 -920.423160 1010604.7 -1 [141,] 8236 33.04132 -1318.032142 1010102.8 -1 [142,] 8314 33.04344 -1475.135332 1009181.2 -1 [143,] 8315 33.04346 -1092.385745 1010595.0 1 [144,] 8316 33.04350 -602.401846 1010051.1 -1 [145,] 9642 33.07928 -898.124551 1021855.1 -1 [146,] 9648 33.07943 -559.512345 1022138.1 -1 [147,] 9722 33.08131 -517.280883 1021062.7 -1 [148,] 9723 33.08134 -760.591559 1021471.2 1 [149,] 9724 33.08136 -1076.132596 1020398.5 -1 [150,] 9726 33.08141 -1409.653119 1020068.0 -1 [151,] 11046 33.11527 -841.684974 1024681.9 -1 [152,] 11052 33.11543 -1301.895658 1024155.0 -1 [153,] 11130 33.11758 -1263.129804 1023321.2 -1 [154,] 11131 33.11760 -886.094412 1024508.6 1 [155,] 11132 33.11763 -551.523747 1024033.9 -1 [156,] 12664 33.15957 -463.496612 1037710.2 -1 [157,] 12670 33.15973 -157.442315 1038005.4 -1 [158,] 12744 33.16176 -178.472461 1037298.0 -1 [159,] 12745 33.16179 -603.977057 1037440.1 1 [160,] 12746 33.16181 -966.037947 1036486.5 -1 [161,] 12818 33.16376 -1034.947691 1035180.0 -1 [162,] 12819 33.16379 65.282512 1036173.8 1 [163,] 12820 33.16382 840.627439 1037095.9 -1 [164,] 12821 33.16385 -237.603855 1036187.5 1 [165,] 12822 33.16388 -1859.272455 1034230.4 -1 [166,] 12823 33.16390 -2826.338287 1036093.2 1 [167,] 12824 33.16393 -2839.278542 1033159.9 -1 [168,] 12825 33.16396 -1888.068472 1036024.2 1 [169,] 12826 33.16399 -509.459153 1035658.9 -1 [170,] 12827 33.16401 580.383483 1036049.9 1 [171,] 12828 33.16404 1096.033374 1037292.2 -1 [172,] 12829 33.16407 883.853218 1036059.3 1 [173,] 12830 33.16410 226.446852 1036311.8 -1 [174,] 12831 33.16412 -439.095094 1036007.4 1 [175,] 12832 33.16415 -937.504353 1035053.1 -1 [176,] 13538 33.18351 -272.116842 1029229.8 -1 [177,] 13902 33.19374 358.353867 1033569.5 -1 [178,] 13903 33.19377 -52.234076 1033172.8 1 [179,] 13904 33.19380 -458.959347 1032811.4 -1 [180,] 13974 33.19580 -525.577659 1033636.4 -1 [181,] 13975 33.19583 -227.474568 1034129.8 1 [182,] 13976 33.19586 95.158780 1034332.4 -1 [183,] 14048 33.19787 -103.375649 1033717.0 -1 [184,] 14120 33.19989 57.482050 1033041.6 -1 [185,] 14183 33.20166 -869.830428 1031656.5 1 [186,] 14184 33.20169 265.086746 1031964.6 -1 [187,] 14185 33.20172 4480.945082 1031596.2 1 [188,] 14186 33.20174 269.652855 1031961.5 -1 [189,] 14187 33.20177 -14758.539884 1031560.5 1 [190,] 14188 33.20180 3346.123414 1035564.8 -1 [191,] 14189 33.20183 90242.830919 1032015.6 1 [192,] 14190 33.20185 164086.989045 1243741.1 -1 [193,] 14191 33.20188 263659.059434 1034881.3 1 [194,] 14192 33.20191 228036.472318 1342937.7 -1 [195,] 14193 33.20194 302154.179560 1036713.0 1 [196,] 14194 33.20197 227058.759631 1342927.2 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 3530 32.90835 1.083097e+12 [2,] 4400 32.93302 3.169830e+02 [3,] 9814 33.08364 1.058097e+10 [4,] 12820 33.16382 5.069030e+02 [5,] 14190 33.20185 4.021290e+02 [6,] 14191 33.20188 3.929020e+02 [7,] 14192 33.20191 3.887540e+02 [8,] 14193 33.20194 4.837400e+02 [9,] 14194 33.20197 6.334410e+02 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 188.556 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 150.773 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 151.621 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -13.611 PER MEG" [1] 32.91806 32.91817 [1] "Screened 5 O2 values from screeno2 period 32.9180555555556 to 32.9181712962963" [1] "Screened 7 O2 and CO2 values when pdsp not controlling" [1] 385.3575 419.9283 393.4150 398.3605 398.3123 [1] -508.1779 -734.9683 -585.5853 -770.8202 -788.5477 [1] "Nominal linear calibrations:" [1] "co2scl = 0.962 co2off = -10.02 o2scla = -0.05 o2offa = -147.3" [1] "(dV/V)/(dXO2/XO2) = -4.2" [1] "(dV/V)/d(O2/N2) = -3.321" [1] "Finding cal and sample periods" [1] "Median Cal: 2.91 minutes" [1] "Average Cal: 2.92 minutes" [1] "Shortest Cal: 2.76 minutes" [1] "Longest Cal: 4.98 minutes" [1] "Removed 1 calibration period(s) with less than 30 seconds of data" [1] "at: 48" [1] "Reading in aircraft data" [1] "Reading /scr/raf/stephens/HUMERGE/ATOM2/MMS/MMS-1HZ_DC8_20170201_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 17 items Read 17 items Read 1 item Read 1 item Read 18 items Read 530316 items [1] "Reading /scr/raf/stephens/HUMERGE/ATOM2/MMS/MMS-20Hz_DC8_20170201_R0.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 25 items Read 25 items Read 1 item Read 1 item Read 26 items Read 15337140 items [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.00506" [1] "HS CO2 vs. PACAB: m = -0.00194, r^2 = 0.05" [1] "LS CO2 vs. PACAB: m = -0.00819, r^2 = 0.65" [1] "HS+LS LIH2O vs. PACAB: m = -0.000182" [1] "HS LIH2O vs. PACAB: m = -0.000154, r^2 = 0.63" [1] "LS LIH2O vs. PACAB: m = -0.00021, r^2 = 0.75" [1] "HS+LS CO2 vs. LIH2O: m = 30.7" [1] "HS CO2 vs. LIH2O: m = 27.8, r^2 = 0.55" [1] "LS CO2 vs. LIH2O: m = 33.5, r^2 = 0.9" [1] "APCO2 vs. PACAB: m = -0.0294, r^2 = 0.01" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 0.461" [1] "HS O2 vs. PACAB: m = -0.542, r^2 = 0.04" [1] "LS O2 vs. PACAB: m = 1.46, r^2 = 0.2" [1] "HS+LS O2 vs. LIH2O: m = -3790" [1] "HS O2 vs. LIH2O: m = -787, r^2 = 0" [1] "LS O2 vs. LIH2O: m = -6800, r^2 = 0.26" [1] "HS+LS O2 vs. PAO2: m = -261" [1] "HS O2 vs. PAO2: m = -254, r^2 = 0.46" [1] "LS O2 vs. PAO2: m = -267, r^2 = 0.86" [1] "HS+LS O2 vs. TPBOX: m = 68.9" [1] "HS O2 vs. TPBOX: m = 77.6, r^2 = 0.74" [1] "LS O2 vs. TPBOX: m = 60.2, r^2 = 0.68" [1] "APO vs. PACAB: m = 0.493, r^2 = 0.01" [1] "APO vs. PAO2: m = -189, r^2 = 0.54" [1] "APO vs. TPBOX: m = 78.7, r^2 = 0.85" [1] "Correcting for TPBOX effect on VUV using concentration dependent specification = 0 * DO2 + 80" [1] "HS+LS O2 vs. PACAB postcorr: m = -1.28" [1] "HS O2 vs. PACAB postcorr: m = -2.18, r^2 = 0.38" [1] "LS O2 vs. PACAB postcorr: m = -0.372, r^2 = 0.03" [1] "HS+LS O2 vs. LIH2O postcorr: m = 3520" [1] "HS O2 vs. LIH2O postcorr: m = 4190, r^2 = 0.11" [1] "LS O2 vs. LIH2O postcorr: m = 2840, r^2 = 0.12" [1] "HS+LS O2 vs. PAO2 postcorr: m = -28.8" [1] "HS O2 vs. PAO2 postcorr: m = -55.7, r^2 = 0.07" [1] "LS O2 vs. PAO2 postcorr: m = -1.9, r^2 = 0" [1] "HS+LS O2 vs. TPBOX postcorr: m = -8.66" [1] "HS O2 vs. TPBOX postcorr: m = 1.3, r^2 = 0" [1] "LS O2 vs. TPBOX postcorr: m = -18.6, r^2 = 0.16" [1] "APO vs. PACAB postcorr: m = -0.405, r^2 = 0" [1] "APO vs. PAO2 postcorr: m = 43.5, r^2 = 0" [1] "APO vs. TPBOX postcorr: m = 2.25, r^2 = 0" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = -0.709, r^2 = 0.06" [1] "LS CO2 vs. LiCor Cell P: m = -0.771, r^2 = 0.03" [1] "HS CO2 vs. CO2 Vol P: m = 0.136, r^2 = 0.05" [1] "LS CO2 vs. CO2 Vol P: m = 0.343, r^2 = 0.14" [1] "HS CO2 vs. SLOPE: m = -0.0552, r^2 = 0" [1] "LS CO2 vs. SLOPE: m = 0.962, r^2 = 0.28" [1] "HS O2 vs. O2 Vol P: m = -63.6, r^2 = 0.06" [1] "LS O2 vs. O2 Vol P: m = 5.06, r^2 = 0" [1] "HS O2 vs. O2 Cell T: m = 34.4, r^2 = 0.11" [1] "LS O2 vs. O2 Cell T: m = 9.56, r^2 = 0.01" [1] "HS O2 vs. CO2 Vol P: m = 24.7, r^2 = 0.01" [1] "LS O2 vs. CO2 Vol P: m = 28.5, r^2 = 0.02" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = 54.3, r^2 = 0.02" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = -6.45, r^2 = 0.01" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = 24.7, r^2 = 0.01" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = 28.5, r^2 = 0.02" [1] "HS O2 vs. LIH2O: m = 4220, r^2 = 0.07" [1] "LS O2 vs. LIH2O: m = 2470, r^2 = 0.06" [1] "HS O2 vs. SLOPE: m = -0.757, r^2 = 0.02" [1] "LS O2 vs. SLOPE: m = 0.594, r^2 = 0.03" [1] "HS CO2 vs. Time: m = 16.064, r^2 = 0.72" [1] "LS CO2 vs. Time: m = 15.791, r^2 = 0.7" [1] "HS CO2 vs. Cylinder T: m = -0.238, r^2 = 0.03" [1] "LS CO2 vs. Cylinder T: m = -0.03, r^2 = 0" [1] "HS CO2 vs. Regulator T: m = -0.178, r^2 = 0.2" [1] "LS CO2 vs. Regulator T: m = -0.303, r^2 = 0.311" [1] "HS CO2 vs. Ref. Volumes T: m = -0.116, r^2 = 0.13" [1] "LS CO2 vs. Ref. Volumes T: m = -0.125, r^2 = 0.061" [1] "HS CO2 vs. Manifold T: m = -0.098, r^2 = 0.23" [1] "LS CO2 vs. Manifold T: m = -0.167, r^2 = 0.262" [1] "HS CO2 vs. Pump Box T: m = -0.022, r^2 = 0.03" [1] "LS CO2 vs. Pump Box T: m = -0.147, r^2 = 0.458" [1] "HS O2 vs. Cylinder T: m = 262.821, r^2 = 0.17" [1] "LS O2 vs. Cylinder T: m = 169.91, r^2 = 0.09" [1] "HS O2 vs. Regulator T: m = 22.544, r^2 = 0.02" [1] "LS O2 vs. Regulator T: m = -13.984, r^2 = 0.012" [1] "HS O2 vs. Ref. Volumes T: m = 42.948, r^2 = 0.08" [1] "LS O2 vs. Ref. Volumes T: m = 15.491, r^2 = 0.017" [1] "HS O2 vs. Manifold T: m = 29.477, r^2 = 0.1" [1] "LS O2 vs. Manifold T: m = 7.141, r^2 = 0.009" [1] "HS O2 vs. Pump Box T: m = -12.521, r^2 = 0.05" [1] "LS O2 vs. Pump Box T: m = -22.938, r^2 = 0.204" [1] "HS CO2 vs. WT P: m = -0.003, r^2 = 0.12" [1] "LS CO2 vs. WT P: m = -0.009, r^2 = 0.592" [1] "HS CO2 vs. SP P: m = -0.00409, r^2 = 0.33" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.073, r^2 = 0.54" [1] "HS CO2 vs. SP P comb with PACAB: m = -0.079, r^2 = 0.54" [1] "LS CO2 vs. SP P: m = -0.00987, r^2 = 0.68" [1] "LS CO2 vs. PACAB comb with SP P: m = 0.068, r^2 = 0.68" [1] "LS CO2 vs. SP P comb with PACAB: m = -0.079, r^2 = 0.68" [1] "HS CO2 vs. WT FL: m = -0.087, r^2 = 0.34" [1] "LS CO2 vs. WT FL: m = -0.137, r^2 = 0.449" [1] "HS CO2 vs. SP FL: m = -0.042, r^2 = 0.06" [1] "LS CO2 vs. SP FL: m = 0.002, r^2 = 0" [1] "HS O2 vs. SLPDIFF: m = 1.708, r^2 = 0.18" [1] "LS O2 vs. SLPDIFF: m = -0.02, r^2 = 0" [1] "HS O2 vs. WT P: m = -2.166, r^2 = 0.36" [1] "LS O2 vs. WT P: m = -0.523, r^2 = 0.034" [1] "HS O2 vs. SP P: m = -2.19, r^2 = 0.35" [1] "LS O2 vs. SP P: m = -0.55, r^2 = 0.036" [1] "HS O2 vs. WT FL: m = 11.472, r^2 = 0.03" [1] "LS O2 vs. WT FL: m = -1.866, r^2 = 0.002" [1] "HS O2 vs. SP FL: m = 47.651, r^2 = 0.39" [1] "LS O2 vs. SP FL: m = 7.453, r^2 = 0.014" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): 78.8, 29.64, 31.62, 14.61" [1] "Empirical LP O2 lag flow(s): 105.3, 91.2, 91.6, 94.4" [1] "Empirical LP CO2 lag time(s): 78.8, 24.8, 25.23, 14.61" [1] "Empirical LP CO2 lag flow(s): 105.3, 91.2, 91.6, 94.4" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.82" [1] "Median all HS CO2 SD = 0.79" [1] "Median all LS CO2 SD = 0.81" [1] "Median all LT CO2 SD = 0.8" [1] "Median all WT CO2 SD = 0.86" [1] "Median all HS or LS CO2 SD = 0.8" [1] "Median all cal O2 SD = 10.83" [1] "Median all HS O2 SD = 9.52" [1] "Median all LS O2 SD = 10.83" [1] "Median all LT O2 SD = 8.39" [1] "Median all WT O2 SD = 10.16" [1] "Median all HS or LS O2 SD = 9.93" [1] "Median all cal CO2 Slope = 0" [1] "Median all HS CO2 Slope = -0.06" [1] "Median all LS CO2 Slope = -0.01" [1] "Median all LT CO2 Slope = -0.01" [1] "Median all WT CO2 Slope = 0.1" [1] "Median all HS or LS CO2 Slope = -0.02" [1] "Median all cal O2 Slope = 3.16" [1] "Median all HS O2 Slope = 3.16" [1] "Median all LS O2 Slope = 0.81" [1] "Median all LT O2 Slope = -4.65" [1] "Median all WT O2 Slope = 3.23" [1] "Median all HS or LS O2 Slope = 3.1" [1] "Broke calibration interpolation before 32.9513888888889 and after 32.9555555555556" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 27.87 per meg" [1] "Initial O2 Calibration Offset = 41.3 per meg" [1] "SD of O2 Calibration (post-takeoff) = 21.23 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = 42.53 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = 55.42 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using ATom2 inlet volumes" [1] "before any lag: 69907.19 103849.95" [1] "Time lag adjustments = 2 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 48.1 at 94.3 sccm" [1] "Median O2 delay + tlagff = 48.9 at 94.3 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 44.6 at 94.3 sccm" [1] "Median O2 delay from 3-way + tlagff = 45.3 at 94.3 sccm" [1] "after calc and ff lag: 69859.16 103806.3" [1] "2025-05-13 15:30:13 MDT" [1] "Calculating 1-sec interpolated values" [1] "Screened 357 1-Hz values because of data gaps at:" [1] 32.91692 32.95088 32.95089 32.95090 32.95091 32.95093 32.95094 32.95095 [9] 32.95096 32.95097 32.95098 32.95100 32.95101 32.95102 32.95103 32.95104 [17] 32.95105 32.95106 32.95108 32.95109 32.95110 32.95111 32.95112 32.95113 [25] 32.95115 32.95116 32.95117 32.95118 32.95119 32.95120 32.95122 32.95123 [33] 32.95124 32.95125 32.95126 32.95127 32.95128 32.95130 32.95131 32.95132 [41] 32.95133 32.95134 32.95135 32.95137 32.95138 32.95139 32.95140 32.95141 [49] 32.95142 32.95144 32.95145 32.95146 32.95147 32.95148 32.95149 32.95150 [57] 32.95152 32.95153 32.95154 32.95155 32.95156 32.95157 32.95159 32.95160 [65] 32.95161 32.95162 32.95163 32.95164 32.95166 32.95167 32.95168 32.95169 [73] 32.95170 32.95171 32.95172 32.95174 32.95175 32.95176 32.95177 32.95178 [81] 32.95179 32.95181 32.95182 32.95183 32.95184 32.95185 32.95186 32.95188 [89] 32.95189 32.95190 32.95191 32.95192 32.95193 32.95194 32.95196 32.95197 [97] 32.95198 32.95199 32.95200 32.95201 32.95203 32.95204 32.95205 32.95206 [105] 32.95207 32.95208 32.95209 32.95211 32.95212 32.95213 32.95214 32.95215 [113] 32.95216 32.95218 32.95219 32.95220 32.95221 32.95222 32.95223 32.95225 [121] 32.95226 32.95227 32.95228 32.95229 32.95230 32.95231 32.95233 32.95234 [129] 32.95235 32.95236 32.95237 32.95238 32.95240 32.95241 32.95242 32.95243 [137] 32.95244 32.95245 32.95247 32.95248 32.95249 32.95250 32.95251 32.95252 [145] 32.95253 32.95255 32.95256 32.95257 32.95258 32.95259 32.95260 32.95262 [153] 32.95263 32.95264 32.95265 32.95266 32.95267 32.95269 32.95270 32.95271 [161] 32.95272 32.95273 32.95274 32.95275 32.95277 32.95278 32.95279 32.95280 [169] 32.95281 32.95282 32.95284 32.95285 32.95286 32.95287 32.95288 32.95289 [177] 32.95291 32.95292 32.95293 32.95294 32.95295 32.95296 32.95297 32.95299 [185] 32.95300 32.95301 32.95302 32.95303 32.95304 32.95306 32.95307 32.95308 [193] 32.95309 32.95310 32.95311 32.95312 32.95314 32.95315 32.95316 32.95317 [201] 32.95318 32.95319 32.95321 32.95322 32.95323 32.95324 32.95325 32.95326 [209] 32.95328 32.95329 32.95330 32.95331 32.95332 32.95333 32.95334 32.95336 [217] 32.95337 32.95338 32.95339 32.95340 32.95341 32.95343 32.95344 32.95345 [225] 32.95346 32.95347 32.95348 32.95350 32.95351 32.95352 32.95353 32.95354 [233] 32.95355 32.95356 32.95358 32.95359 32.95360 32.95361 32.95362 32.95363 [241] 32.95365 32.95366 32.95367 32.95368 32.95369 32.95370 32.95372 32.95373 [249] 32.95374 32.95375 32.95376 32.95377 32.95378 32.95380 32.95381 32.95382 [257] 32.95383 32.95384 32.95385 32.95387 32.95388 32.95389 32.95390 32.95391 [265] 32.95392 32.95394 32.95395 32.95396 32.95397 32.95398 32.95399 32.95400 [273] 32.95402 32.95403 32.95404 32.95405 32.95406 32.95407 32.95409 32.95410 [281] 32.95411 32.95412 32.95413 32.95414 32.95416 32.95417 32.95418 32.95419 [289] 32.95420 32.95421 32.95422 32.95424 32.95425 32.95426 32.95427 32.95428 [297] 32.95429 32.95431 32.95432 32.95433 32.95434 32.95435 32.95436 32.95437 [305] 32.95439 32.95440 32.95441 32.95442 32.95443 32.95444 32.95446 32.95447 [313] 32.95448 32.95449 32.95450 32.95451 32.95453 32.95454 32.95455 32.95456 [321] 32.95457 32.95458 32.95459 32.95461 32.95462 32.95463 32.95464 32.95465 [329] 32.95466 32.95468 32.95469 32.95470 32.95471 32.95472 32.95473 32.95475 [337] 32.95476 32.95477 32.95478 32.95479 32.95480 32.95481 32.95483 32.95484 [345] 32.95485 32.95486 32.95487 32.95488 32.95490 32.95491 32.95492 32.95493 [353] 32.95494 32.95495 32.95497 32.95498 32.95499 [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] 13.81031631 0.15412771 -15.23279274 -16.22628787 -17.79524325 [6] 10.57839992 11.09346198 11.09346198 10.98377624 -2.71547149 [11] -10.57296823 -14.02982867 4.14489618 21.69509320 29.25983560 [16] 29.25983560 29.25983560 1.15334274 1.82161125 1.82161125 [21] -4.47116661 -11.47670625 -12.17243429 3.09170214 -10.82529389 [26] 3.95712357 -0.73881965 -0.73881965 3.55701292 1.44769914 [31] 1.73403817 5.37018206 6.79775057 13.20852359 -46.07109690 [36] -46.07109690 -47.48550820 -29.11764983 -18.03330433 -11.59791721 [41] -10.57125700 -14.31563992 -13.46028965 -14.06826404 -14.14057339 [46] -14.26723436 -28.60114359 -28.60114359 -20.35432892 -20.35432892 [51] -33.95881463 -33.49224986 -33.76238689 -33.02270220 -25.07002603 [56] -12.05800066 -12.05800066 -25.60668974 -23.93956332 19.63303323 [61] 19.63303323 15.91581781 12.99205458 12.99205458 2.28608487 [66] -13.83429152 -22.24284704 -22.24284704 -6.14195730 -3.79837009 [71] -23.91260234 37.87565959 -25.06892124 -12.26895793 -31.68041807 [76] -59.76340705 -59.76340705 -46.81071224 -21.40907025 -31.32876819 [81] -31.32876819 -32.09424612 -33.00723288 -31.97300569 -31.97300569 [86] -31.97300569 -44.02989681 -44.02989681 -44.02989681 -44.02989681 [91] -20.82016519 -20.82016519 -20.82016519 -15.16201218 -24.46730219 [96] -6.39572771 -21.41275880 -21.41275880 -32.56987937 -29.84623053 [101] -27.47649458 -27.47649458 -4.01363874 -1.98539591 -1.93463220 [106] 17.92753138 22.27590085 21.21727590 20.25096744 20.14616083 [111] 12.72201681 12.70501193 12.68720132 12.60020512 20.47558044 [116] 20.46212014 20.46212014 20.46212014 11.01337048 10.24098836 [121] 8.08471262 5.54281561 0.37044058 -1.08688317 -1.08688317 [126] -1.08688317 9.18701826 10.11985649 10.11985649 5.80480511 [131] -4.13236499 -15.38800948 -15.38800948 -15.38800948 -17.04577781 [136] NA NA NA NA NA [141] NA NA NA NA NA [146] NA NA NA NA NA [151] NA -18.08689037 -18.08689037 -20.00465358 -21.36306779 [156] -17.17809804 -17.17809804 -17.17809804 -10.59508675 -13.86464968 [161] -13.86464968 -13.86464968 -15.36628410 -20.60519552 -21.60575743 [166] -21.60575743 -21.60575743 -29.95150782 -31.05401897 -31.05401897 [171] -31.00687975 -29.32858152 -40.81280281 -49.10600243 -54.93360099 [176] -58.01504519 -58.01504519 -58.01504519 -57.40262560 NA [181] NA NA NA NA NA [186] NA NA -12.79221503 -12.79221503 -12.79221503 [191] -1.96286017 14.88357797 15.02329048 15.02329048 -3.12959859 [196] -26.64984445 -24.30976584 -24.30976584 9.47537700 -10.08230346 [201] -15.32540523 -15.38322451 -13.69966208 -12.06213793 -12.05840797 [206] -12.05840797 1.33736631 0.02894947 -1.11346921 -1.11346921 [211] -3.13182503 -5.66670750 2.05261484 5.00555644 4.13933597 [216] 0.14366798 0.14366798 0.14366798 -0.02964887 -15.28812842 [221] -15.58878153 -15.58878153 -15.35811076 -0.26864208 -3.05216593 [226] -4.69596349 -7.30895051 -14.41858209 -14.41858209 -14.09111345 [231] -9.96756288 20.84227234 20.91794323 20.91794323 20.86563946 [236] 13.16908040 10.14966085 1.69490120 0.83686784 12.30865169 [241] 12.30865169 12.30865169 11.46536211 -7.85316295 -7.85316295 [246] -7.85316295 -7.85316295 1.17349651 -4.10509028 -8.97586042 [251] -11.84533565 -21.76186079 -21.76186079 -21.76186079 -23.31005071 [256] -10.30628115 9.24752994 16.98160126 21.37462657 42.82281606 [261] 42.82281606 42.82281606 41.83088535 36.75034693 36.75034693 [266] 36.75034693 36.75034693 24.51603869 27.70871919 43.07927819 [271] 53.55405617 47.03569099 47.03569099 47.03569099 61.57559983 [276] 53.33101399 34.31205229 34.31205229 41.13933975 48.55439591 [281] 48.55439591 48.19683855 38.78767030 18.05285685 12.16483716 [286] 12.16483716 21.35640202 29.45445892 29.45445892 29.45445892 [291] 29.26269782 27.13962462 27.01214454 27.01214454 24.83540202 [296] 12.88026708 12.88026708 12.88026708 23.74091347 32.83454712 [301] 37.42991497 38.28227051 37.80587409 37.50454733 37.50454733 [306] 37.50454733 37.76205518 NA NA NA [311] NA NA NA NA NA [316] 32.50562316 32.50562316 32.50562316 31.02795561 25.32385201 [321] 25.32385201 25.12255880 NA NA NA [326] NA NA NA NA NA [331] 41.76965953 41.76965953 41.76965953 41.76965953 39.18355957 [336] 39.18355957 39.18355957 38.91162091 36.96346325 31.65660038 [341] 31.65660038 31.65660038 22.31467942 11.93628516 18.99380744 [346] 30.30008291 37.31555619 38.40699604 38.40699604 38.40699604 [351] 38.42059821 41.44395915 42.43528762 42.43528762 35.27910723 [356] 29.63993032 29.63993032 31.08292262 39.51206478 50.18254901 [361] 50.42106243 50.42106243 50.92672450 53.41262218 53.41262218 [366] 53.37980989 51.67838732 47.12198464 47.12198464 47.12198464 [371] 47.25334061 48.20532376 48.20532376 48.20532376 48.20532376 [376] 68.20690506 68.20690506 68.20690506 68.20690506 52.49941477 [381] 52.49941477 52.49941477 52.49941477 51.96737256 50.22022359 [386] 48.60213070 48.25286811 40.58232366 40.58232366 40.58232366 [391] 40.58232366 56.82277150 56.82277150 56.82277150 56.82277150 [396] 52.68653048 52.68653048 52.68653048 52.68653048 37.14193798 [401] 37.14193798 37.14193798 37.14193798 30.09274388 24.66755180 [406] 18.61378416 18.61378416 33.56300826 33.56300826 33.56300826 [411] 33.56300826 32.33706422 32.33706422 32.33706422 32.32519866 [416] 14.65354657 14.41371932 14.40821094 14.40292044 17.61715288 [421] 17.61715288 17.61715288 [1] 26.47183 27.59261 28.32518 28.75042 29.45985 30.53609 31.89948 [8] 32.97229 34.05412 35.23720 37.20987 39.63515 42.97768 46.22322 [15] 49.51678 53.14067 56.42056 59.65914 62.84647 65.22679 67.28314 [22] 69.88938 72.39128 74.86307 77.50522 79.90784 82.72844 85.72429 [29] 89.98016 93.68573 97.70097 101.06335 104.25816 106.94535 110.44613 [36] 113.30598 115.69763 118.47292 120.98456 123.74687 127.57982 131.03901 [43] 133.92077 136.97549 139.73947 142.17640 144.40260 146.78330 149.07258 [50] 151.24100 153.63784 156.29097 158.68963 162.05533 164.72159 167.79457 [57] 171.67070 176.11765 180.45097 184.20250 187.42311 190.32124 192.75929 [64] 194.85979 197.17468 199.29140 201.57775 204.18255 206.69135 209.27029 [71] 211.93122 214.88758 217.57946 220.76566 223.46245 226.02105 228.33415 [78] 231.45934 233.91711 236.25278 238.96144 241.33701 243.50640 245.53473 [85] 247.92746 249.97546 252.48707 254.70220 257.14275 259.40471 262.67462 [92] 266.07474 269.15401 271.74246 273.96760 276.20530 278.42917 280.54057 [99] 282.65740 284.75469 287.11411 290.15203 292.59494 295.06539 297.11159 [106] 299.49515 301.05865 302.42480 303.19503 303.57434 303.77890 303.84044 [113] 303.90490 304.21976 304.77057 305.69796 306.63941 307.41046 308.24809 [120] 308.78938 309.33167 309.85306 310.41121 310.95493 311.52622 312.20698 [127] 313.14503 313.91691 314.70909 315.72985 316.76977 318.55404 320.42163 [134] 322.09731 324.21799 326.21138 327.90662 329.58095 331.21224 332.64547 [141] 334.19046 335.56468 336.94993 338.46340 339.77327 341.33944 342.96616 [148] 344.71949 346.44064 348.53037 351.07157 353.05401 354.94535 357.01330 [155] 358.60932 360.32291 361.85330 363.28428 364.69059 366.13476 367.49767 [162] 368.91968 370.37363 372.23315 373.97323 376.03131 377.71512 379.44913 [169] 381.25853 382.93213 384.70803 386.25972 387.72718 389.27541 390.90127 [176] 392.31410 393.52464 394.75596 396.10978 397.57444 399.17212 400.88968 [183] 402.82216 404.66332 406.57661 408.38214 410.56622 412.65739 414.54140 [190] 416.30864 417.81929 419.70299 421.29892 423.01777 424.73340 426.32227 [197] 428.38182 430.16938 432.46223 434.41274 436.24704 438.45095 440.09789 [204] 442.43710 444.32015 446.05998 447.79671 449.15063 450.30147 451.44739 [211] 452.40889 453.40427 454.27014 455.36565 456.37770 457.32896 458.28788 [218] 459.15098 460.20543 461.43668 462.69130 463.93759 465.33798 466.81460 [225] 468.40202 469.73076 471.07781 472.51356 473.59773 474.71916 475.61588 [232] 476.76634 477.61918 478.44119 479.29283 480.30107 481.39512 482.55467 [239] 483.67292 485.00533 486.22315 487.35706 488.52306 489.80616 491.20274 [246] 492.55040 493.92448 495.54268 496.97692 498.40075 499.64586 500.96148 [253] 501.99341 503.09925 504.08005 504.90729 505.73384 506.45035 507.13740 [260] 507.71123 508.21066 508.71298 509.13614 509.63241 510.16230 510.68026 [267] 511.26982 511.94089 512.64391 513.44871 514.16150 515.18530 516.04932 [274] 516.87584 517.83596 518.61710 519.44308 520.30246 520.98422 521.68819 [281] 522.53347 523.40792 524.24890 525.05779 525.85686 526.60481 527.37354 [288] 528.08388 528.68350 529.38993 530.01213 530.78812 531.66852 532.43361 [295] 533.18467 534.18929 535.06186 535.96260 536.90680 537.85165 538.74182 [302] 539.66596 540.53989 541.40936 542.32538 543.11379 544.17911 545.04781 [309] 545.83210 546.55166 547.23072 547.80086 548.22331 548.69772 549.13510 [316] 549.52829 549.79856 550.13721 550.44852 550.71681 551.00919 551.23303 [323] 551.43194 551.61314 551.73712 551.81832 551.88984 551.93299 552.20103 [330] 552.44693 552.94108 553.50201 554.12556 554.87963 555.66401 556.41094 [337] 557.18082 558.05874 558.95208 559.98854 560.93725 562.11563 563.26950 [344] 564.84025 566.02656 567.46632 568.61538 569.76794 570.98135 572.15227 [351] 573.16025 574.38439 575.21376 576.22978 577.08456 577.99492 578.79588 [358] 579.57079 580.49898 581.33179 582.18012 583.12457 584.09761 585.15641 [365] 585.99968 586.97071 587.73612 588.69256 589.23824 589.83610 590.32183 [372] 590.70981 591.17493 591.46424 591.67053 591.87244 591.96149 591.97370 [379] 592.13780 592.42008 592.74325 593.07326 593.60927 594.18964 594.78607 [386] 595.33843 595.77220 596.18536 596.51045 596.84727 597.03338 597.29130 [393] 597.48273 597.69605 597.97656 598.28258 598.56060 599.02941 599.43288 [400] 599.91025 600.39654 600.86531 601.41732 601.99497 602.53734 603.19413 [407] 603.74005 604.31566 604.86930 605.36163 605.75307 606.29984 606.88619 [414] 607.46402 608.08001 608.84078 609.54346 610.20181 610.99230 611.68822 [421] 612.28467 612.95363 [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Not reporting 45 O2 values from manual exclude period 33.163259 to 33.1645" [1] "Not reporting 45 APO values from manual exclude period 33.163259 to 33.1645" [1] "Not reporting 110 smoothed O2 values from manual exclude period 33.1626826315493 to 33.1639559578125" [1] "Not reporting 110 smoothed APO values from manual exclude period 33.1626826315493 to 33.1639559578125" [1] "Not reporting 110 smoothed O2 values from manual exclude period 33.1626826315493 to 33.1639559578125" [1] "Not reporting 110 smoothed APO values from manual exclude period 33.1626826315493 to 33.1639559578125" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1702/AO2_DC8_20170201_R3.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 117848 items [1] 3 2947 29462 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 26 26 26 26 26 26 [1] 61910 61920 61930 61940 61950 61960 [1] "2017-01-26 17:11:50 UTC" "2017-01-26 17:12:00 UTC" [3] "2017-01-26 17:12:10 UTC" "2017-01-26 17:12:20 UTC" [5] "2017-01-26 17:12:30 UTC" "2017-01-26 17:12:40 UTC" [1] -382.3889 -387.0900 -364.9280 -347.1720 -349.8190 -364.4600 [1] 27481 [1] "Average Date / Time for slice RF03 = 2017-02-02 00:25:27.5938863754272" [1] "sum(lsel) = 2290" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -32.428 761.662 [1] -32.428 761.662 [1] 238.338 1032.428 [1] 2.220446e-16 9.999990e+05 [1] "highestmid = 724.987" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM2 RF03 APO_AO2 range = -370.26,-273.21" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1702/AO2_DC8_20170201_R3.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 117848 items [1] 3 2947 29462 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 26 26 26 26 26 26 [1] 61910 61920 61930 61940 61950 61960 [1] "2017-01-26 17:11:50 UTC" "2017-01-26 17:12:00 UTC" [3] "2017-01-26 17:12:10 UTC" "2017-01-26 17:12:20 UTC" [5] "2017-01-26 17:12:30 UTC" "2017-01-26 17:12:40 UTC" [1] -770.4522 -755.1640 -715.8090 -685.0810 -683.6090 -687.0920 [1] 27492 [1] "Average Date / Time for slice RF03 = 2017-02-02 00:25:22.0209515094757" [1] "sum(lsel) = 2291" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -32.428 761.662 [1] -32.428 761.662 [1] 238.338 1032.428 [1] 2.220446e-16 9.999990e+05 [1] "highestmid = 724.987" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM2 RF03 O2_AO2 range = -678.76,-569.24" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1702/AO2_DC8_20170201_R3.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 117848 items [1] 3 2947 29462 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 26 26 26 26 26 26 [1] 61910 61920 61930 61940 61950 61960 [1] "2017-01-26 17:11:50 UTC" "2017-01-26 17:12:00 UTC" [3] "2017-01-26 17:12:10 UTC" "2017-01-26 17:12:20 UTC" [5] "2017-01-26 17:12:30 UTC" "2017-01-26 17:12:40 UTC" [1] 423.8729 420.0680 416.7962 414.3267 413.5424 411.4184 [1] 27702 [1] "Average Date / Time for slice RF03 = 2017-02-02 00:24:11.8205461502075" [1] "sum(lsel) = 2307" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -32.428 761.662 [1] -32.428 761.662 [1] 238.338 1032.428 [1] 2.220446e-16 9.999990e+05 [1] "highestmid = 724.987" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM2 RF03 CO2_AO2 range = 405.3,413.84" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 52 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 52 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 52 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 52 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 52 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 52 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 52 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 52 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 52 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 52 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 52 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 52 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 52 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 52 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 52 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 52 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 52 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"