[1] "2025-05-13 15:24:45 MDT" options [1,] "file" "170129a" [2,] "flight" "RF02" [3,] "project" "ATOM2" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "300" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "2" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "full" [48,] "o2caltype" "full" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "TRUE" [64,] "icartt" "lookup" [65,] "icarttrev" "1" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "170129a" [1] "Reading in flight and plotting intervals" Read 26 records [1] "Reading in /scr/raf/stephens/AO2DAT/170129a.mr" Read 16825 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.42 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.46 seconds" [1] "New JOGEST = 2.46 seconds" [1] "New VALVE SKIP = 24 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/170129a.hr" Read 67303 records [1] "HR FILE MATCHES" [1] "Converting hrdata statout" [1] "Tue May 13 03:24:46 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30762 description: HS CO2 = 385.36 O2 = -508.2" [1] "position 2 cylinder OK30761 description: LS CO2 = 419.93 O2 = -734.9" [1] "position 3 cylinder OK30772 description: LT CO2 = 393.42 O2 = -585.8" [1] "position 4 cylinder OK30769 description: WT CO2 = 398.36 O2 = -770.7" [1] "position 5 cylinder OK30770 description: LP CO2 = 398.31 O2 = -788.5" [1] 385.3575 419.9279 393.4152 398.3573 398.3104 [1] -508.1886 -734.9407 -585.7574 -770.6737 -788.4535 [1] "Nominal linear calibrations:" [1] "co2scl = 0.996 co2off = -12.68 o2scla = -0.045 o2offa = 23.8" [1] "(dV/V)/(dXO2/XO2) = -4.644" [1] "(dV/V)/d(O2/N2) = -3.672" [1] "Reading in very high resolution timeseries" Read 336500 records [1] 336500 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 03:24:46 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 03:24:49 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.672" [1] "o2scaleavenew_drelVdrelP = -4.644" [1] "median(o2scalenew) = -3.69" [1] "Empirical dV/V vs dP/P relationship =-2.431, r^2 =0.001, damping =0.524" [1] "Tue May 13 03:24:49 PM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "Plotting Jog Shapes" [1] "Tue May 13 03:25:41 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 1923884.419392 SECONDS" [1] "Tue May 13 03:25:41 PM MDT 2025 done recreating mr o2diffs" [1] "Removed 1 medium-rate record(s) with accumulation errors" [1] "Removed 11 medium-rate record(s) from calbreak period" [1] "from: 15959" [1] "to: 15969" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 159.772 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 70.268 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 70.548 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -26.118 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 10 [1] 95 [1] 120 [1] 120 [1] 120 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 1 29.68966 3834.372 981226.8 1 [2,] 2 29.68970 3521.035 985066.1 -1 [3,] 3 29.68973 3459.366 981700.1 1 [4,] 80 29.69184 3437.288 988159.2 -1 [5,] 81 29.69187 3172.296 984791.5 1 [6,] 82 29.69190 2821.758 987594.0 -1 [7,] 156 29.69400 2465.078 990011.3 -1 [8,] 157 29.69403 2907.366 987588.7 1 [9,] 158 29.69406 3244.693 990882.9 -1 [10,] 234 29.69624 2875.292 993181.3 -1 [11,] 308 29.69833 2726.317 995374.8 -1 [12,] 309 29.69836 2944.214 992672.3 1 [13,] 310 29.69839 3213.004 995928.2 -1 [14,] 454 29.70251 3393.018 1000674.1 -1 [15,] 455 29.70253 3036.523 997278.1 1 [16,] 456 29.70256 2624.892 999927.0 -1 [17,] 528 29.70460 2793.297 1002424.3 -1 [18,] 529 29.70463 3104.263 999602.2 1 [19,] 530 29.70466 3324.368 1002982.0 -1 [20,] 746 29.71085 3210.307 1007938.5 -1 [21,] 747 29.71088 2854.605 1004741.3 1 [22,] 748 29.71091 2527.114 1007319.6 -1 [23,] 818 29.71291 2466.233 1008340.2 -1 [24,] 819 29.71294 2819.420 1005859.3 1 [25,] 820 29.71297 3199.558 1009154.7 -1 [26,] 1182 29.72337 3097.666 1012429.3 -1 [27,] 1183 29.72340 2783.381 1009312.3 1 [28,] 1184 29.72342 2514.781 1011868.9 -1 [29,] 1330 29.72762 3427.292 1013347.8 -1 [30,] 1488 29.73171 3650.640 1011722.7 -1 [31,] 1489 29.73174 3144.671 1007970.4 1 [32,] 1490 29.73176 2578.086 1010554.2 -1 [33,] 1568 29.73376 2446.612 1007853.4 -1 [34,] 1569 29.73379 2825.104 1005347.9 1 [35,] 1570 29.73382 3223.695 1008605.8 -1 [36,] 1645 29.73574 3251.997 1002489.0 1 [37,] 1646 29.73577 3242.479 1005559.7 -1 [38,] 1647 29.73579 3352.190 1002132.0 1 [39,] 2562 29.76144 2941.289 999342.3 -1 [40,] 2636 29.76354 3170.992 997847.9 -1 [41,] 2637 29.76356 2871.870 994663.7 1 [42,] 2638 29.76360 2517.294 997152.3 -1 [43,] 3794 29.79692 3321.161 984745.9 -1 [44,] 3796 29.79700 3271.743 984679.2 -1 [45,] 3797 29.79703 2953.062 981455.8 1 [46,] 3798 29.79706 2633.049 984037.3 -1 [47,] 3870 29.79917 2846.665 983826.5 -1 [48,] 3872 29.79923 3335.930 984250.7 -1 [49,] 3942 29.80125 3148.874 983164.8 -1 [50,] 3944 29.80130 2795.160 982793.5 -1 [51,] 5122 29.83511 3046.617 989332.0 -1 [52,] 5128 29.83527 3384.725 989751.7 -1 [53,] 5200 29.83711 3398.586 990468.2 -1 [54,] 5201 29.83713 3018.825 987075.5 1 [55,] 5202 29.83716 2627.650 989679.0 -1 [56,] 6464 29.87236 3136.543 985773.0 -1 [57,] 6468 29.87247 3150.841 985826.5 -1 [58,] 6469 29.87250 2900.171 982699.3 1 [59,] 6470 29.87252 2612.844 985283.4 -1 [60,] 6542 29.87455 2452.282 985721.5 -1 [61,] 6543 29.87458 2787.129 983286.2 1 [62,] 6544 29.87461 3150.383 986459.0 -1 [63,] 8014 29.91674 3162.259 999569.6 -1 [64,] 8092 29.91894 3230.159 999744.3 -1 [65,] 8093 29.91897 2856.664 996512.4 1 [66,] 8094 29.91899 2506.579 999018.9 -1 [67,] 9382 29.95551 3134.714 1008188.0 -1 [68,] 9386 29.95563 2989.260 1007883.1 -1 [69,] 9387 29.95566 2728.261 1004866.4 1 [70,] 9388 29.95569 2497.152 1007372.0 -1 [71,] 9458 29.95766 2461.446 1005203.8 -1 [72,] 9459 29.95769 2913.080 1002661.5 1 [73,] 9460 29.95772 3249.255 1005950.6 -1 [74,] 10772 29.99516 2826.063 1006936.2 -1 [75,] 10778 29.99534 3368.883 1007584.2 -1 [76,] 10846 29.99728 3434.321 1008034.1 -1 [77,] 10847 29.99732 3235.942 1004531.9 1 [78,] 10848 29.99735 2951.385 1007476.8 -1 [79,] 10850 29.99740 2498.143 1007058.0 -1 [80,] 12504 30.04187 3127.238 1003795.4 -1 [81,] 12510 30.04204 2492.691 1003207.4 -1 [82,] 12580 30.04402 2460.209 1003605.2 -1 [83,] 12581 30.04405 2820.856 1001129.3 1 [84,] 12582 30.04408 3184.775 1004396.0 -1 [85,] 12656 30.04618 2820.245 1004216.0 -1 [86,] 12728 30.04822 3218.500 1004352.0 -1 [87,] 14328 30.09380 2843.850 1017020.5 -1 [88,] 14336 30.09403 3156.818 1017483.8 -1 [89,] 14337 30.09405 2911.056 1014256.6 1 [90,] 14338 30.09409 2358.821 1016641.4 -1 [91,] 14339 30.09411 1872.912 1014267.1 1 [92,] 14340 30.09414 1530.578 1015820.1 -1 [93,] 14342 30.09420 1583.626 1015914.0 -1 [94,] 14343 30.09423 1799.715 1014308.9 1 [95,] 14344 30.09426 2077.145 1016459.8 -1 [96,] 14345 30.09429 2342.949 1014336.5 1 [97,] 14346 30.09432 2577.920 1017007.3 -1 [98,] 14348 30.09437 2973.832 1017447.2 -1 [99,] 14350 30.09443 3258.019 1017776.0 -1 [100,] 14532 30.09958 3127.793 1020172.8 -1 [101,] 14533 30.09961 2843.867 1017008.0 1 [102,] 14534 30.09964 2518.982 1019604.6 -1 [103,] 14604 30.10162 2467.503 1020011.9 -1 [104,] 14605 30.10165 2825.445 1017470.6 1 [105,] 14606 30.10168 3182.593 1020748.4 -1 [106,] 15957 30.13995 3260.308 999335.8 1 [107,] 15958 30.13998 3299.831 1002618.2 -1 [108,] 15959 30.14032 3259.247 1003306.7 -1 [109,] 15960 30.14034 3295.827 999971.3 1 [110,] 16051 30.14289 3268.068 1003762.2 -1 [111,] 16525 30.15629 3330.297 1007154.9 -1 [112,] 16526 30.15632 2951.279 1003828.8 1 [113,] 16527 30.15635 2589.646 1006487.3 -1 [114,] 16597 30.15832 2480.450 1007214.6 -1 [115,] 16598 30.15834 2746.847 1004705.1 1 [116,] 16599 30.15837 3063.163 1007868.6 -1 [117,] 16601 30.15843 3383.447 1008190.8 -1 [118,] 16671 30.16041 3375.533 1008795.5 -1 [119,] 16672 30.16044 3125.353 1005374.7 1 [120,] 16673 30.16046 2865.823 1008290.8 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 4438 29.81587 1.055594e+09 [2,] 9635 29.96265 4.192060e+02 [3,] 14637 30.10257 1.355376e+03 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 159.772 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 70.268 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 70.548 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -26.118 PER MEG" [1] 385.3575 419.9279 393.4152 398.3573 398.3104 [1] -508.1886 -734.9407 -585.7574 -770.6737 -788.4535 [1] "Nominal linear calibrations:" [1] "co2scl = 0.996 co2off = -12.68 o2scla = -0.045 o2offa = 23.7" [1] "(dV/V)/(dXO2/XO2) = -4.611" [1] "(dV/V)/d(O2/N2) = -3.646" [1] "Finding cal and sample periods" [1] "Median Cal: 2.94 minutes" [1] "Average Cal: 2.93 minutes" [1] "Shortest Cal: 2.68 minutes" [1] "Longest Cal: 5 minutes" [1] "Removed 4 calibration period(s) with less than 30 seconds of data" [1] "at: 14" [1] "at: 19" [1] "at: 47" [1] "at: 60" [1] "Reading in aircraft data" [1] "Reading /scr/raf/stephens/HUMERGE/ATOM2/MMS/MMS-1HZ_DC8_20170129_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 17 items Read 17 items Read 1 item Read 1 item Read 18 items Read 628794 items [1] "Reading /scr/raf/stephens/HUMERGE/ATOM2/MMS/MMS-20Hz_DC8_20170129_R0.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 25 items Read 25 items Read 1 item Read 1 item Read 26 items Read 18182164 items [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = 0.00849" [1] "HS CO2 vs. PACAB: m = 0.0133, r^2 = 0.54" [1] "LS CO2 vs. PACAB: m = 0.00372, r^2 = 0.06" [1] "HS+LS LIH2O vs. PACAB: m = -0.000193" [1] "HS LIH2O vs. PACAB: m = -0.000195, r^2 = 0.95" [1] "LS LIH2O vs. PACAB: m = -0.000191, r^2 = 0.97" [1] "HS+LS CO2 vs. LIH2O: m = -55.3" [1] "HS CO2 vs. LIH2O: m = -62.5, r^2 = 0.46" [1] "LS CO2 vs. LIH2O: m = -48, r^2 = 0.25" [1] "APCO2 vs. PACAB: m = -0.0217, r^2 = 0.17" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 0.0738" [1] "HS O2 vs. PACAB: m = 0.075, r^2 = 0.15" [1] "LS O2 vs. PACAB: m = 0.0725, r^2 = 0.14" [1] "HS+LS O2 vs. LIH2O: m = -452" [1] "HS O2 vs. LIH2O: m = -491, r^2 = 0.27" [1] "LS O2 vs. LIH2O: m = -413, r^2 = 0.17" [1] "HS+LS O2 vs. PAO2: m = -9.75" [1] "HS O2 vs. PAO2: m = -7.46, r^2 = 0.02" [1] "LS O2 vs. PAO2: m = -12, r^2 = 0.06" [1] "HS+LS O2 vs. TPBOX: m = 13.9" [1] "HS O2 vs. TPBOX: m = 18.2, r^2 = 0.72" [1] "LS O2 vs. TPBOX: m = 9.69, r^2 = 0.29" [1] "APO vs. PACAB: m = 0.414, r^2 = 0.17" [1] "APO vs. PAO2: m = -33.3, r^2 = 0.09" [1] "APO vs. TPBOX: m = 18.9, r^2 = 0.23" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 17.6, r^2 = 0.12" [1] "LS CO2 vs. LiCor Cell P: m = 21.6, r^2 = 0.12" [1] "HS CO2 vs. CO2 Vol P: m = 1.24, r^2 = 0.03" [1] "LS CO2 vs. CO2 Vol P: m = 1.17, r^2 = 0.03" [1] "HS CO2 vs. SLOPE: m = 1.34, r^2 = 0.05" [1] "LS CO2 vs. SLOPE: m = 2.7, r^2 = 0.06" [1] "HS O2 vs. O2 Vol P: m = -4.63, r^2 = 0.01" [1] "LS O2 vs. O2 Vol P: m = -7.63, r^2 = 0.02" [1] "HS O2 vs. O2 Cell T: m = -1.7, r^2 = 0.01" [1] "LS O2 vs. O2 Cell T: m = 1.03, r^2 = 0" [1] "HS O2 vs. CO2 Vol P: m = -19.7, r^2 = 0.1" [1] "LS O2 vs. CO2 Vol P: m = -12.4, r^2 = 0.03" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = -14.7, r^2 = 0.1" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = -2.66, r^2 = 0" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -19.7, r^2 = 0.1" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -12.4, r^2 = 0.03" [1] "HS O2 vs. LIH2O: m = -500, r^2 = 0.23" [1] "LS O2 vs. LIH2O: m = -414, r^2 = 0.13" [1] "HS O2 vs. SLOPE: m = 1.13, r^2 = 0.18" [1] "LS O2 vs. SLOPE: m = 0.00367, r^2 = 0" [1] "HS CO2 vs. Time: m = 27.009, r^2 = 0.92" [1] "LS CO2 vs. Time: m = 26.724, r^2 = 0.91" [1] "HS CO2 vs. Cylinder T: m = -11.777, r^2 = 0.18" [1] "LS CO2 vs. Cylinder T: m = -14.158, r^2 = 0.26" [1] "HS CO2 vs. Regulator T: m = -1.666, r^2 = 0.23" [1] "LS CO2 vs. Regulator T: m = -2.335, r^2 = 0.313" [1] "HS CO2 vs. Ref. Volumes T: m = -1.643, r^2 = 0.1" [1] "LS CO2 vs. Ref. Volumes T: m = -2.385, r^2 = 0.123" [1] "HS CO2 vs. Manifold T: m = -1.136, r^2 = 0.27" [1] "LS CO2 vs. Manifold T: m = -1.139, r^2 = 0.272" [1] "HS CO2 vs. Pump Box T: m = -0.372, r^2 = 0.02" [1] "LS CO2 vs. Pump Box T: m = -0.504, r^2 = 0.054" [1] "HS O2 vs. Cylinder T: m = -54.361, r^2 = 0.05" [1] "LS O2 vs. Cylinder T: m = 5.463, r^2 = 0" [1] "HS O2 vs. Regulator T: m = 3.92, r^2 = 0.01" [1] "LS O2 vs. Regulator T: m = -7.178, r^2 = 0.032" [1] "HS O2 vs. Ref. Volumes T: m = -4.873, r^2 = 0.01" [1] "LS O2 vs. Ref. Volumes T: m = 0.668, r^2 = 0" [1] "HS O2 vs. Manifold T: m = 1.873, r^2 = 0.01" [1] "LS O2 vs. Manifold T: m = 4.911, r^2 = 0.054" [1] "HS O2 vs. Pump Box T: m = 13.673, r^2 = 0.4" [1] "LS O2 vs. Pump Box T: m = 10.847, r^2 = 0.27" [1] "HS CO2 vs. WT P: m = 0.015, r^2 = 0.45" [1] "LS CO2 vs. WT P: m = 0.013, r^2 = 0.331" [1] "HS CO2 vs. SP P: m = 0.0135, r^2 = 0.56" [1] "HS CO2 vs. PACAB comb with SP P: m = -0.011, r^2 = 0.44" [1] "HS CO2 vs. SP P comb with PACAB: m = 0.026, r^2 = 0.44" [1] "LS CO2 vs. SP P: m = 0.0066, r^2 = 0.16" [1] "LS CO2 vs. PACAB comb with SP P: m = 0.045, r^2 = 0.33" [1] "LS CO2 vs. SP P comb with PACAB: m = -0.032, r^2 = 0.33" [1] "HS CO2 vs. WT FL: m = 0.124, r^2 = 0.01" [1] "LS CO2 vs. WT FL: m = 0.338, r^2 = 0.031" [1] "HS CO2 vs. SP FL: m = -0.438, r^2 = 0.44" [1] "LS CO2 vs. SP FL: m = -0.443, r^2 = 0.377" [1] "HS O2 vs. SLPDIFF: m = 3.036, r^2 = 0.32" [1] "LS O2 vs. SLPDIFF: m = -0.635, r^2 = 0.061" [1] "HS O2 vs. WT P: m = 0.076, r^2 = 0.14" [1] "LS O2 vs. WT P: m = 0.075, r^2 = 0.117" [1] "HS O2 vs. SP P: m = 0.079, r^2 = 0.14" [1] "LS O2 vs. SP P: m = 0.077, r^2 = 0.12" [1] "HS O2 vs. WT FL: m = 6.704, r^2 = 0.21" [1] "LS O2 vs. WT FL: m = 4.171, r^2 = 0.051" [1] "HS O2 vs. SP FL: m = -1.717, r^2 = 0.08" [1] "LS O2 vs. SP FL: m = -2.373, r^2 = 0.116" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): 75.56, 33.96, 34.2, 32.06" [1] "Empirical LP O2 lag flow(s): 99.5, 99.2, 99.5, 92.4" [1] "Empirical LP CO2 lag time(s): 71.15, 46.4, 29.18, 29.73" [1] "Empirical LP CO2 lag flow(s): 99.5, 99.2, 99.5, 92.4" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.85" [1] "Median all HS CO2 SD = 0.83" [1] "Median all LS CO2 SD = 0.85" [1] "Median all LT CO2 SD = 0.82" [1] "Median all WT CO2 SD = 0.89" [1] "Median all HS or LS CO2 SD = 0.85" [1] "Median all cal O2 SD = 3.51" [1] "Median all HS O2 SD = 2.94" [1] "Median all LS O2 SD = 3.62" [1] "Median all LT O2 SD = 3.01" [1] "Median all WT O2 SD = 2.77" [1] "Median all HS or LS O2 SD = 3.34" [1] "Median all cal CO2 Slope = 0.08" [1] "Median all HS CO2 Slope = 0.08" [1] "Median all LS CO2 Slope = 0.06" [1] "Median all LT CO2 Slope = 0.17" [1] "Median all WT CO2 Slope = 0.13" [1] "Median all HS or LS CO2 Slope = 0.07" [1] "Median all cal O2 Slope = 0.32" [1] "Median all HS O2 Slope = -0.24" [1] "Median all LS O2 Slope = 0.12" [1] "Median all LT O2 Slope = 0.61" [1] "Median all WT O2 Slope = 0.19" [1] "Median all HS or LS O2 Slope = -0.08" [1] "Broke calibration interpolation before 30.14 and after 30.1403" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 4.36 per meg" [1] "Initial O2 Calibration Offset = 1.64 per meg" [1] "SD of O2 Calibration (post-takeoff) = 4.65 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = 2.15 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = 5.74 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using ATom2 inlet volumes" [1] "before any lag: 59586.54 100606.15" [1] "Time lag adjustments = 2 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 49.1 at 97.4 sccm" [1] "Median O2 delay + tlagff = 49.9 at 97.4 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 46.9 at 97.4 sccm" [1] "Median O2 delay from 3-way + tlagff = 47.6 at 97.4 sccm" [1] "after calc and ff lag: 59533.77 100557.04" [1] "2025-05-13 15:26:39 MDT" [1] "Calculating 1-sec interpolated values" [1] "Screened 41 1-Hz values because of data gaps at:" [1] 29.81043 29.81044 29.81045 29.81046 29.81047 29.81049 29.81050 29.81051 [9] 29.81052 29.81053 29.81054 29.81056 29.81057 29.81058 29.81059 29.81060 [17] 29.81061 29.81063 29.81064 29.81065 29.81066 29.81067 29.81068 30.13942 [25] 30.13943 30.13944 30.13946 30.13947 30.13948 30.13949 30.13950 30.13951 [33] 30.13953 30.13954 30.13955 30.13956 30.13957 30.13958 30.13959 30.13961 [41] 30.13962 [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Not reporting 56 O2 values from manual exclude period 29.795526 to 29.797173" [1] "Not reporting 56 APO values from manual exclude period 29.795526 to 29.797173" [1] "Not reporting 73 O2 values from manual exclude period 29.877505 to 29.879564" [1] "Not reporting 73 APO values from manual exclude period 29.877505 to 29.879564" [1] "Not reporting 58 O2 values from manual exclude period 29.960307 to 29.961955" [1] "Not reporting 58 APO values from manual exclude period 29.960307 to 29.961955" [1] "Not reporting 58 O2 values from manual exclude period 29.998207 to 29.999855" [1] "Not reporting 58 APO values from manual exclude period 29.998207 to 29.999855" [1] "Not reporting 83 O2 values from manual exclude period 29.9775 to 29.98" [1] "Not reporting 83 APO values from manual exclude period 29.9775 to 29.98" [1] "Not reporting 145 smoothed O2 values from manual exclude period 29.7949745957757 to 29.7966464847132" [1] "Not reporting 145 smoothed APO values from manual exclude period 29.7949745957757 to 29.7966464847132" [1] "Not reporting 178 smoothed O2 values from manual exclude period 29.8769526680326 to 29.8790097201366" [1] "Not reporting 178 smoothed APO values from manual exclude period 29.8769526680326 to 29.8790097201366" [1] "Not reporting 142 smoothed O2 values from manual exclude period 29.9597799013642 to 29.9614130887208" [1] "Not reporting 142 smoothed APO values from manual exclude period 29.9597799013642 to 29.9614130887208" [1] "Not reporting 141 smoothed O2 values from manual exclude period 29.997683329284 to 29.9993169147319" [1] "Not reporting 141 smoothed APO values from manual exclude period 29.997683329284 to 29.9993169147319" [1] "Not reporting 217 smoothed O2 values from manual exclude period 29.9769425702972 to 29.979454058639" [1] "Not reporting 217 smoothed APO values from manual exclude period 29.9769425702972 to 29.979454058639" [1] "Not reporting 145 smoothed O2 values from manual exclude period 29.7949745957757 to 29.7966464847132" [1] "Not reporting 145 smoothed APO values from manual exclude period 29.7949745957757 to 29.7966464847132" [1] "Not reporting 178 smoothed O2 values from manual exclude period 29.8769526680326 to 29.8790097201366" [1] "Not reporting 178 smoothed APO values from manual exclude period 29.8769526680326 to 29.8790097201366" [1] "Not reporting 142 smoothed O2 values from manual exclude period 29.9597799013642 to 29.9614130887208" [1] "Not reporting 142 smoothed APO values from manual exclude period 29.9597799013642 to 29.9614130887208" [1] "Not reporting 141 smoothed O2 values from manual exclude period 29.997683329284 to 29.9993169147319" [1] "Not reporting 141 smoothed APO values from manual exclude period 29.997683329284 to 29.9993169147319" [1] "Not reporting 217 smoothed O2 values from manual exclude period 29.9769425702972 to 29.979454058639" [1] "Not reporting 217 smoothed APO values from manual exclude period 29.9769425702972 to 29.979454058639" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1701/AO2_DC8_20170129_R5.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 139732 items [1] 2 3494 34933 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 26 26 26 26 26 26 [1] 61910 61920 61930 61940 61950 61960 [1] "2017-01-26 17:11:50 UTC" "2017-01-26 17:12:00 UTC" [3] "2017-01-26 17:12:10 UTC" "2017-01-26 17:12:20 UTC" [5] "2017-01-26 17:12:30 UTC" "2017-01-26 17:12:40 UTC" [1] -382.3889 -387.0900 -364.9280 -347.1720 -349.8190 -364.4600 [1] 27483 [1] "Average Date / Time for slice RF02 = 2017-01-29 22:29:08.549241065979" [1] "sum(lsel) = 2833" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -14.882 803.001 [1] -14.882 803.001 [1] 196.999 1014.882 [1] 4.440892e-16 9.999990e+05 [1] "highestmid = 724.994" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM2 RF02 APO_AO2 range = -370.07,-298.72" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1701/AO2_DC8_20170129_R5.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 139732 items [1] 2 3494 34933 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 26 26 26 26 26 26 [1] 61910 61920 61930 61940 61950 61960 [1] "2017-01-26 17:11:50 UTC" "2017-01-26 17:12:00 UTC" [3] "2017-01-26 17:12:10 UTC" "2017-01-26 17:12:20 UTC" [5] "2017-01-26 17:12:30 UTC" "2017-01-26 17:12:40 UTC" [1] -770.4522 -755.1640 -715.8090 -685.0810 -683.6090 -687.0920 [1] 27493 [1] "Average Date / Time for slice RF02 = 2017-01-29 22:29:08.549241065979" [1] "sum(lsel) = 2833" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -14.882 803.001 [1] -14.882 803.001 [1] 196.999 1014.882 [1] 4.440892e-16 9.999990e+05 [1] "highestmid = 724.994" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM2 RF02 O2_AO2 range = -694.67,-573.85" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1701/AO2_DC8_20170129_R5.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 139732 items [1] 2 3494 34933 [1] "done reading AO2" [1] 2017 2017 2017 2017 2017 2017 [1] 26 26 26 26 26 26 [1] 61910 61920 61930 61940 61950 61960 [1] "2017-01-26 17:11:50 UTC" "2017-01-26 17:12:00 UTC" [3] "2017-01-26 17:12:10 UTC" "2017-01-26 17:12:20 UTC" [5] "2017-01-26 17:12:30 UTC" "2017-01-26 17:12:40 UTC" [1] 423.8729 420.0680 416.7962 414.3267 413.5424 411.4184 [1] 27697 [1] "Average Date / Time for slice RF02 = 2017-01-29 22:28:43.2334494590759" [1] "sum(lsel) = 2870" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -14.882 803.001 [1] -14.882 803.001 [1] 196.999 1014.882 [1] 4.440892e-16 9.999990e+05 [1] "highestmid = 724.994" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM2 RF02 CO2_AO2 range = 399.98,413.3" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"