[1] "2025-05-13 14:53:25 MDT" options [1,] "file" "160812c" [2,] "flight" "RF06" [3,] "project" "ATOM1" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "1000" [7,] "spspco" "1000" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "7" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "aft" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "full" [48,] "o2caltype" "full" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "FALSE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "TRUE" [64,] "icartt" "98" [65,] "icarttrev" "1" [66,] "mmsrev" "TRUE" [67,] "usespline" "-19" [68,] "updncorr" "4pt" [69,] "updnave" "160812c" [1] "Reading in flight and plotting intervals" Read 10 records [1] "Reading in /scr/raf/stephens/AO2DAT/160812c.mr" Read 18738 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.42 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.43 seconds" [1] "New JOGEST = 2.43 seconds" [1] "New VALVE SKIP = 25 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/160812c.hr" Read 74954 records [1] "HR FILE MATCHES" [1] "Converting hrdata statout" [1] "Tue May 13 02:53:25 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30762 description: HS CO2 = 385.35 O2 = -512.3" [1] "position 2 cylinder OK30761 description: LS CO2 = 419.92 O2 = -738.3" [1] "position 3 cylinder OK30772 description: LT CO2 = 393.43 O2 = -588.2" [1] "position 4 cylinder OK30766 description: WT CO2 = 402.6 O2 = -861" [1] "position 5 cylinder OK30769 description: LP CO2 = 398.34 O2 = -814.2" [1] 385.3524 419.9194 393.4309 402.5976 398.3393 [1] -512.2570 -738.3273 -588.2407 -860.9763 -814.2372 [1] "Nominal linear calibrations:" [1] "co2scl = 1.064 co2off = 13.93 o2scla = -0.046 o2offa = -210.1" [1] "(dV/V)/(dXO2/XO2) = -4.58" [1] "(dV/V)/d(O2/N2) = -3.621" [1] "Reading in very high resolution timeseries" Read 374760 records [1] 374760 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 02:53:26 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 02:53:28 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.621" [1] "o2scaleavenew_drelVdrelP = -4.58" [1] "median(o2scalenew) = -3.618" [1] "Empirical dV/V vs dP/P relationship =-2.614, r^2 =0.006, damping =0.571" [1] "Tue May 13 02:53:28 PM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "MASKING 20 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 02:54:29 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 19514760.570432 SECONDS" [1] "Tue May 13 02:54:29 PM MDT 2025 done recreating mr o2diffs" [1] "Removed 1 medium-rate record(s) with accumulation errors" [1] "Screening 4 LiH2O values less than -10" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 189.647 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 82.052 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 83.315 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -17.016 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 5 [1] 9 [1] 19 [1] 20 [1] 20 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 1 225.8654 -550.0886 1044904.9 1 [2,] 84 225.8677 -1391.8937 1043226.6 -1 [3,] 85 225.8677 -1958.8514 1044683.7 1 [4,] 86 225.8678 -2508.9050 1042032.9 -1 [5,] 3032 225.9510 -2431.5489 1009622.2 -1 [6,] 4310 225.9869 -2242.6097 999500.3 -1 [7,] 5926 226.0318 -2373.7909 991702.6 -1 [8,] 7570 226.0777 -2298.4405 990761.1 -1 [9,] 8944 226.1162 -2242.0986 998747.7 -1 [10,] 10978 226.1734 -2122.6826 1001606.6 -1 [11,] 11598 226.1909 -2249.7049 989540.7 -1 [12,] 11599 226.1909 -2247.8975 992249.3 1 [13,] 11600 226.1909 -2249.9424 990574.9 -1 [14,] 11601 226.1909 -2235.5581 993385.8 1 [15,] 11602 226.1910 -2236.2026 991748.1 -1 [16,] 11603 226.1910 -2237.7624 994545.6 1 [17,] 12736 226.2229 -2235.9761 981526.2 -1 [18,] 14278 226.2662 -1642.8819 989166.3 -1 [19,] 17196 226.3484 -1777.2219 985917.4 -1 [20,] 18014 226.3714 -2138.9295 1009766.4 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 5564 226.0217 9.105953e+08 [2,] 12947 226.2288 3.697170e+02 [3,] 15305 226.2951 9.205955e+10 [4,] 16607 226.3318 9.255947e+11 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 189.647 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 82.052 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 83.315 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -17.016 PER MEG" [1] 385.3524 419.9194 393.4309 402.5976 398.3393 [1] -512.2570 -738.3273 -588.2407 -860.9763 -814.2372 [1] "Nominal linear calibrations:" [1] "co2scl = 1.064 co2off = 13.93 o2scla = -0.046 o2offa = -209.8" [1] "(dV/V)/(dXO2/XO2) = -4.589" [1] "(dV/V)/d(O2/N2) = -3.628" [1] "Finding cal and sample periods" [1] "Median Cal: 2.94 minutes" [1] "Average Cal: 2.9 minutes" [1] "Shortest Cal: 0.73 minutes" [1] "Longest Cal: 4.98 minutes" [1] "Removed 4 calibration period(s) with less than 30 seconds of data" [1] "at: 14" [1] "at: 19" [1] "at: 55" [1] "at: 60" [1] "Reading in aircraft data" [1] "Reading /scr/raf/stephens/HUMERGE/ATOM1/MMS/MMS-1HZ_DC8_20160812_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 17 items Read 17 items Read 1 item Read 1 item Read 18 items Read 690120 items [1] "Reading /scr/raf/stephens/HUMERGE/ATOM1/MMS/MMS-20Hz_DC8_20160812_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 25 items Read 25 items Read 1 item Read 1 item Read 26 items Read 19953882 items [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = 0.00755" [1] "HS CO2 vs. PACAB: m = 0.00822, r^2 = 0.4" [1] "LS CO2 vs. PACAB: m = 0.00688, r^2 = 0.17" [1] "HS+LS LIH2O vs. PACAB: m = -0.000274" [1] "HS LIH2O vs. PACAB: m = -0.000269, r^2 = 0.83" [1] "LS LIH2O vs. PACAB: m = -0.000278, r^2 = 0.89" [1] "HS+LS CO2 vs. LIH2O: m = 0.574" [1] "HS CO2 vs. LIH2O: m = -17.5, r^2 = 0.13" [1] "LS CO2 vs. LIH2O: m = 18.6, r^2 = 0.07" [1] "APCO2 vs. PACAB: m = 0.0158, r^2 = 0.03" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 0.213" [1] "HS O2 vs. PACAB: m = 0.23, r^2 = 0.51" [1] "LS O2 vs. PACAB: m = 0.196, r^2 = 0.55" [1] "HS+LS O2 vs. LIH2O: m = -743" [1] "HS O2 vs. LIH2O: m = -765, r^2 = 0.57" [1] "LS O2 vs. LIH2O: m = -720, r^2 = 0.78" [1] "HS+LS O2 vs. PAO2: m = -18.3" [1] "HS O2 vs. PAO2: m = -19.3, r^2 = 0.51" [1] "LS O2 vs. PAO2: m = -17.4, r^2 = 0.66" [1] "HS+LS O2 vs. TPBOX: m = 5.58" [1] "HS O2 vs. TPBOX: m = 5.27, r^2 = 0.52" [1] "LS O2 vs. TPBOX: m = 5.89, r^2 = 0.81" [1] "APO vs. PACAB: m = -0.32, r^2 = 0.03" [1] "APO vs. PAO2: m = -9.5, r^2 = 0" [1] "APO vs. TPBOX: m = 3.55, r^2 = 0" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 6.03, r^2 = 0.21" [1] "LS CO2 vs. LiCor Cell P: m = 4.91, r^2 = 0.11" [1] "HS CO2 vs. CO2 Vol P: m = 0.348, r^2 = 0.08" [1] "LS CO2 vs. CO2 Vol P: m = 0.329, r^2 = 0.06" [1] "HS CO2 vs. SLOPE: m = 0.602, r^2 = 0.07" [1] "LS CO2 vs. SLOPE: m = 1.31, r^2 = 0.18" [1] "HS O2 vs. O2 Vol P: m = -16.4, r^2 = 0.39" [1] "LS O2 vs. O2 Vol P: m = -16.4, r^2 = 0.6" [1] "HS O2 vs. O2 Cell T: m = 7.78, r^2 = 0.27" [1] "LS O2 vs. O2 Cell T: m = 6.52, r^2 = 0.34" [1] "HS O2 vs. CO2 Vol P: m = -9.82, r^2 = 0.2" [1] "LS O2 vs. CO2 Vol P: m = -13, r^2 = 0.58" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = 9.22, r^2 = 0.17" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = -4.94, r^2 = 0.3" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -9.82, r^2 = 0.2" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -13, r^2 = 0.58" [1] "HS O2 vs. LIH2O: m = -750, r^2 = 0.44" [1] "LS O2 vs. LIH2O: m = -736, r^2 = 0.77" [1] "HS O2 vs. SLOPE: m = 0.0204, r^2 = 0" [1] "LS O2 vs. SLOPE: m = 0.0274, r^2 = 0" [1] "HS CO2 vs. Time: m = 29.183, r^2 = 0.86" [1] "LS CO2 vs. Time: m = 29.582, r^2 = 0.86" [1] "HS CO2 vs. Cylinder T: m = 1.219, r^2 = 0.11" [1] "LS CO2 vs. Cylinder T: m = 1.045, r^2 = 0.074" [1] "HS CO2 vs. Regulator T: m = 0.007, r^2 = 0" [1] "LS CO2 vs. Regulator T: m = -0.061, r^2 = 0.003" [1] "HS CO2 vs. Ref. Volumes T: m = 0.73, r^2 = 0.16" [1] "LS CO2 vs. Ref. Volumes T: m = 0.624, r^2 = 0.1" [1] "HS CO2 vs. Manifold T: m = -0.019, r^2 = 0" [1] "LS CO2 vs. Manifold T: m = -0.027, r^2 = 0.002" [1] "HS CO2 vs. Pump Box T: m = -0.047, r^2 = 0.01" [1] "LS CO2 vs. Pump Box T: m = -0.032, r^2 = 0.004" [1] "HS O2 vs. Cylinder T: m = 14.021, r^2 = 0.05" [1] "LS O2 vs. Cylinder T: m = -2.818, r^2 = 0.003" [1] "HS O2 vs. Regulator T: m = 9.645, r^2 = 0.26" [1] "LS O2 vs. Regulator T: m = -0.184, r^2 = 0" [1] "HS O2 vs. Ref. Volumes T: m = 8.051, r^2 = 0.06" [1] "LS O2 vs. Ref. Volumes T: m = -1.99, r^2 = 0.006" [1] "HS O2 vs. Manifold T: m = 6.575, r^2 = 0.34" [1] "LS O2 vs. Manifold T: m = 6.81, r^2 = 0.609" [1] "HS O2 vs. Pump Box T: m = 4.784, r^2 = 0.41" [1] "LS O2 vs. Pump Box T: m = 5.789, r^2 = 0.825" [1] "HS CO2 vs. WT P: m = 0.006, r^2 = 0.09" [1] "LS CO2 vs. WT P: m = 0.001, r^2 = 0.001" [1] "HS CO2 vs. SP P: m = 0.00802, r^2 = 0.33" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.266, r^2 = 0.52" [1] "HS CO2 vs. SP P comb with PACAB: m = -0.261, r^2 = 0.52" [1] "LS CO2 vs. SP P: m = 0.00815, r^2 = 0.32" [1] "LS CO2 vs. PACAB comb with SP P: m = 0.023, r^2 = 0" [1] "LS CO2 vs. SP P comb with PACAB: m = -0.022, r^2 = 0" [1] "HS CO2 vs. WT FL: m = 0.112, r^2 = 0.04" [1] "LS CO2 vs. WT FL: m = 0.042, r^2 = 0.004" [1] "HS CO2 vs. SP FL: m = -0.183, r^2 = 0.04" [1] "LS CO2 vs. SP FL: m = 0.104, r^2 = 0.021" [1] "HS O2 vs. SLPDIFF: m = -0.205, r^2 = 0.01" [1] "LS O2 vs. SLPDIFF: m = -1.125, r^2 = 0.356" [1] "HS O2 vs. WT P: m = 0.228, r^2 = 0.38" [1] "LS O2 vs. WT P: m = 0.196, r^2 = 0.57" [1] "HS O2 vs. SP P: m = 0.235, r^2 = 0.4" [1] "LS O2 vs. SP P: m = 0.2, r^2 = 0.566" [1] "HS O2 vs. WT FL: m = 6.906, r^2 = 0.43" [1] "LS O2 vs. WT FL: m = 6.682, r^2 = 0.626" [1] "HS O2 vs. SP FL: m = -2.755, r^2 = 0.03" [1] "LS O2 vs. SP FL: m = -3.35, r^2 = 0.132" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): 59.85, 72.64" [1] "Empirical LP O2 lag flow(s): 98.8, 99.2" [1] "Empirical LP CO2 lag time(s): 42.49, 50.69" [1] "Empirical LP CO2 lag flow(s): 98.8, 99.2" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.81" [1] "Median all HS CO2 SD = 0.81" [1] "Median all LS CO2 SD = 0.81" [1] "Median all LT CO2 SD = 0.83" [1] "Median all WT CO2 SD = 0.8" [1] "Median all HS or LS CO2 SD = 0.81" [1] "Median all cal O2 SD = 2.44" [1] "Median all HS O2 SD = 2.27" [1] "Median all LS O2 SD = 1.95" [1] "Median all LT O2 SD = 4.25" [1] "Median all WT O2 SD = 2.13" [1] "Median all HS or LS O2 SD = 2.13" [1] "Median all cal CO2 Slope = 0.02" [1] "Median all HS CO2 Slope = -0.04" [1] "Median all LS CO2 Slope = 0" [1] "Median all LT CO2 Slope = -0.1" [1] "Median all WT CO2 Slope = 0.05" [1] "Median all HS or LS CO2 Slope = 0" [1] "Median all cal O2 Slope = 0.74" [1] "Median all HS O2 Slope = 1.4" [1] "Median all LS O2 Slope = 0.39" [1] "Median all LT O2 Slope = 6.13" [1] "Median all WT O2 Slope = -1.33" [1] "Median all HS or LS O2 Slope = 0.76" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 8.24 per meg" [1] "Initial O2 Calibration Offset = 1.04 per meg" [1] "SD of O2 Calibration (post-takeoff) = 8.11 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = 10.73 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = 10.6 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using ATom1 RF04-RF11 outer 1/8\" inlet volumes" [1] "before any lag: 74767.36 120241.67" [1] "Time lag adjustments = 7 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 50.8 at 101.4 sccm" [1] "Median O2 delay + tlagff = 51.5 at 101.4 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 50.5 at 101.4 sccm" [1] "Median O2 delay from 3-way + tlagff = 51.2 at 101.4 sccm" [1] "after calc and ff lag: 74709.19 120185.73" [1] "2025-05-13 14:55:38 MDT" [1] "Calculating 1-sec interpolated values" [1] "Screened 1 1-Hz values because of data gaps at:" [1] 225.933 [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Not reporting 1261 O2 values from manual exclude period 225.953819444444 to 225.989236111111" [1] "Not reporting 1261 APO values from manual exclude period 225.953819444444 to 225.989236111111" [1] "Not reporting 1261 CO2 values from manual exclude period 225.953819444444 to 225.989236111111" [1] "Not reporting 1261 APO values from manual exclude period 225.953819444444 to 225.989236111111" [1] "Not reporting 12780 O2 values from manual exclude period 226.032719907407 to 367" [1] "Not reporting 12780 APO values from manual exclude period 226.032719907407 to 367" [1] "Not reporting 12780 CO2 values from manual exclude period 226.032719907407 to 367" [1] "Not reporting 12780 APO values from manual exclude period 226.032719907407 to 367" [1] "Not reporting 3062 smoothed O2 values from manual exclude period 225.953234716893 to 225.988676869705" [1] "Not reporting 3062 smoothed APO values from manual exclude period 225.953234716893 to 225.988676869705" [1] "Not reporting 3062 smoothed CO2 values from manual exclude period 225.953234716893 to 225.988676869705" [1] "Not reporting 3062 smoothed APO values from manual exclude period 225.953234716893 to 225.988676869705" [1] "Not reporting 29270 smoothed O2 values from manual exclude period 226.032162220101 to 366.999352501477" [1] "Not reporting 29270 smoothed APO values from manual exclude period 226.032162220101 to 366.999352501477" [1] "Not reporting 29270 smoothed CO2 values from manual exclude period 226.032162220101 to 366.999352501477" [1] "Not reporting 29270 smoothed APO values from manual exclude period 226.032162220101 to 366.999352501477" [1] "Not reporting 3062 smoothed O2 values from manual exclude period 225.953234716893 to 225.988676869705" [1] "Not reporting 3062 smoothed APO values from manual exclude period 225.953234716893 to 225.988676869705" [1] "Not reporting 3062 smoothed CO2 values from manual exclude period 225.953234716893 to 225.988676869705" [1] "Not reporting 3062 smoothed APO values from manual exclude period 225.953234716893 to 225.988676869705" [1] "Not reporting 29270 smoothed O2 values from manual exclude period 226.032162220101 to 366.999352501477" [1] "Not reporting 29270 smoothed APO values from manual exclude period 226.032162220101 to 366.999352501477" [1] "Not reporting 29270 smoothed CO2 values from manual exclude period 226.032162220101 to 366.999352501477" [1] "Not reporting 29270 smoothed APO values from manual exclude period 226.032162220101 to 366.999352501477" [1] "Plotting intervals" [1] "Excluding 3 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 3 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 3 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"