[1] "2025-05-13 14:39:55 MDT" options [1,] "file" "160801b" [2,] "flight" "RF02" [3,] "project" "ATOM1" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "1000" [7,] "spspco" "1000" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "7" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "aft" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "full" [48,] "o2caltype" "full" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "TRUE" [64,] "icartt" "lookup" [65,] "icarttrev" "2" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "160801b" [1] "Reading in flight and plotting intervals" Read 21 records [1] "Reading in /scr/raf/stephens/AO2DAT/160801b.mr" Read 17821 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.42 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.43 seconds" [1] "New JOGEST = 2.43 seconds" [1] "New VALVE SKIP = 25 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/160801b.hr" Read 71288 records [1] "HR FILE LENGTH NOT NSWITCH * MRDATA FILE LENGTH" [1] 17821 71288 [1] "Converting hrdata statout" [1] "Tue May 13 02:39:56 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30762 description: HS CO2 = 385.35 O2 = -513.2" [1] "position 2 cylinder OK30761 description: LS CO2 = 419.92 O2 = -739.1" [1] "position 3 cylinder OK30772 description: LT CO2 = 393.43 O2 = -588.1" [1] "position 4 cylinder OK30770 description: WT CO2 = 395.88 O2 = -744.8" [1] "position 5 cylinder OK30769 description: LP CO2 = 398.34 O2 = -819.8" [1] 385.3507 419.9191 393.4324 395.8798 398.3391 [1] -513.2491 -739.1273 -588.0912 -744.7893 -819.8219 [1] "Nominal linear calibrations:" [1] "co2scl = 1.058 co2off = 16.57 o2scla = -0.046 o2offa = -185.9" [1] "(dV/V)/(dXO2/XO2) = -4.578" [1] "(dV/V)/d(O2/N2) = -3.619" [1] "Reading in very high resolution timeseries" Read 356440 records [1] 356440 [1] "VHR FILE LENGTH NOT 5 * NSWITCH * MRDATA FILE LENGTH" [1] 17821 71288 356440 [1] "REMOVING LEADING OR TRAILING VHR JOG(S) AT:" [1] 356421 356422 356423 356424 356425 356426 356427 356428 356429 356430 [11] 356431 356432 356433 356434 356435 356436 356437 356438 356439 356440 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 02:39:57 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 02:40:00 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.619" [1] "o2scaleavenew_drelVdrelP = -4.578" [1] "median(o2scalenew) = -3.627" [1] "Empirical dV/V vs dP/P relationship =-2.615, r^2 =0.001, damping =0.571" [1] "Tue May 13 02:40:00 PM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "Plotting Jog Shapes" [1] "Tue May 13 02:40:59 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 2.7561600008994 SECONDS" [1] "Tue May 13 02:40:59 PM MDT 2025 done recreating mr o2diffs" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 2439.098 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 2454.201 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 2448.688 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 21.433 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 0 [1] 22 [1] 34 [1] 34 [1] 39 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 2383 214.6068 -1750.71918 977351.6 -1 [2,] 3617 214.6415 -1953.14488 981537.4 -1 [3,] 4837 214.6762 -2363.84315 967943.9 -1 [4,] 6075 214.7109 -2426.83261 952936.5 -1 [5,] 8051 214.7665 -1933.52190 988435.4 -1 [6,] 9287 214.8012 -1854.06935 1001316.3 -1 [7,] 10525 214.8359 -1588.19371 1016451.2 -1 [8,] 11759 214.8706 -1995.11230 1035120.0 -1 [9,] 13013 214.9053 -1315.58507 1020778.7 -1 [10,] 14247 214.9401 -2069.26259 1014801.5 -1 [11,] 15953 214.9876 -2129.57302 1028336.4 -1 [12,] 16673 215.0079 -2143.47466 1014239.2 -1 [13,] 16674 215.0079 -2015.58283 1016834.9 1 [14,] 16675 215.0079 -1849.24928 1015241.4 -1 [15,] 17365 215.0273 -2007.34528 1028275.2 -1 [16,] 17373 215.0276 -1863.36447 1028037.5 -1 [17,] 17374 215.0276 1237.20393 1030010.3 1 [18,] 17375 215.0276 15002.95470 1048073.1 -1 [19,] 17376 215.0276 47515.35635 1030332.3 1 [20,] 17377 215.0277 81494.13987 1124265.3 -1 [21,] 17378 215.0277 125855.60378 1030492.5 1 [22,] 17379 215.0277 137820.86925 1197423.6 -1 [23,] 17380 215.0278 174478.49205 1030710.3 1 [24,] 17381 215.0278 150822.57198 1213812.5 -1 [25,] 17382 215.0278 173384.63620 1030801.5 1 [26,] 17383 215.0278 150680.89847 1213771.1 -1 [27,] 17384 215.0279 194476.06972 1030984.3 1 [28,] 17385 215.0279 150592.17401 1213758.5 -1 [29,] 17386 215.0279 89897.39396 1030845.6 1 [30,] 17387 215.0279 -2055.66650 1028529.9 -1 [31,] 17388 215.0280 -20085.82139 1030445.9 1 [32,] 17389 215.0280 -3330.06246 1026942.8 -1 [33,] 17390 215.0280 2107.81021 1030463.7 1 [34,] 17391 215.0281 -1773.67440 1028696.1 -1 [35,] 17392 215.0281 -2491.22692 1030488.5 1 [36,] 17393 215.0281 -971.93428 1029513.8 -1 [37,] 17423 215.0289 36.03327 1030605.5 -1 [38,] 17424 215.0290 -515.44818 1030609.7 1 [39,] 17425 215.0290 -1032.22766 1029545.1 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 3263 214.6316 9.062500e+24 [2,] 4752 214.6738 9.158317e+04 [3,] 14174 214.9380 2.701340e+02 [4,] 14681 214.9524 9.058663e+05 [5,] 15119 214.9647 2.743030e+02 [6,] 17376 215.0276 3.517870e+02 [7,] 17377 215.0277 3.443590e+02 [8,] 17378 215.0277 3.389840e+02 [9,] 17379 215.0277 3.322010e+02 [10,] 17380 215.0278 3.233500e+02 [11,] 17381 215.0278 3.193630e+02 [12,] 17382 215.0278 3.051530e+02 [13,] 17383 215.0278 3.000700e+02 [14,] 17387 215.0279 4.369000e+02 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) -264.98 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) -247.359 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) -240.526 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 21.433 PER MEG" [1] "Screened 12 O2 and CO2 values when pdsp not controlling" [1] 385.3507 419.9191 393.4324 395.8798 398.3391 [1] -513.2491 -739.1273 -588.0912 -744.7893 -819.8219 [1] "Nominal linear calibrations:" [1] "co2scl = 1.058 co2off = 16.57 o2scla = -0.046 o2offa = -186" [1] "(dV/V)/(dXO2/XO2) = -4.572" [1] "(dV/V)/d(O2/N2) = -3.614" [1] "Finding cal and sample periods" [1] "Median Cal: 2.95 minutes" [1] "Average Cal: 2.95 minutes" [1] "Shortest Cal: 2.84 minutes" [1] "Longest Cal: 4.99 minutes" [1] "Removed 2 calibration period(s) with less than 30 seconds of data" [1] "at: 14" [1] "at: 19" [1] "Reading in aircraft data" [1] "Reading /scr/raf/stephens/HUMERGE/ATOM1/MMS/MMS-1HZ_DC8_20160801_R2.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 17 items Read 17 items Read 1 item Read 1 item Read 18 items Read 658314 items [1] "Reading /scr/raf/stephens/HUMERGE/ATOM1/MMS/MMS-20Hz_DC8_20160801_R1.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 25 items Read 25 items Read 1 item Read 1 item Read 26 items Read 19034340 items [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.00141" [1] "HS CO2 vs. PACAB: m = -0.000994, r^2 = 0.05" [1] "LS CO2 vs. PACAB: m = -0.00183, r^2 = 0.39" [1] "HS+LS LIH2O vs. PACAB: m = -0.00014" [1] "HS LIH2O vs. PACAB: m = -0.000135, r^2 = 0.92" [1] "LS LIH2O vs. PACAB: m = -0.000146, r^2 = 0.93" [1] "HS+LS CO2 vs. LIH2O: m = 11.1" [1] "HS CO2 vs. LIH2O: m = 8.26, r^2 = 0.07" [1] "LS CO2 vs. LIH2O: m = 13.9, r^2 = 0.45" [1] "APCO2 vs. PACAB: m = 0.0201, r^2 = 0.01" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 0.0578" [1] "HS O2 vs. PACAB: m = 0.177, r^2 = 0.36" [1] "LS O2 vs. PACAB: m = -0.0619, r^2 = 0.2" [1] "HS+LS O2 vs. LIH2O: m = -453" [1] "HS O2 vs. LIH2O: m = -1240, r^2 = 0.36" [1] "LS O2 vs. LIH2O: m = 333, r^2 = 0.18" [1] "HS+LS O2 vs. PAO2: m = -25.3" [1] "HS O2 vs. PAO2: m = -21.7, r^2 = 0.33" [1] "LS O2 vs. PAO2: m = -28.9, r^2 = 0.56" [1] "HS+LS O2 vs. TPBOX: m = 13.4" [1] "HS O2 vs. TPBOX: m = 12.3, r^2 = 0.63" [1] "LS O2 vs. TPBOX: m = 14.6, r^2 = 0.63" [1] "APO vs. PACAB: m = -0.403, r^2 = 0.01" [1] "APO vs. PAO2: m = -19, r^2 = 0" [1] "APO vs. TPBOX: m = -19.6, r^2 = 0.04" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = -0.578, r^2 = 0.01" [1] "LS CO2 vs. LiCor Cell P: m = 0.639, r^2 = 0.02" [1] "HS CO2 vs. CO2 Vol P: m = 0.315, r^2 = 0.16" [1] "LS CO2 vs. CO2 Vol P: m = 0.319, r^2 = 0.34" [1] "HS CO2 vs. SLOPE: m = 0.0609, r^2 = 0" [1] "LS CO2 vs. SLOPE: m = -0.338, r^2 = 0.14" [1] "HS O2 vs. O2 Vol P: m = -20.9, r^2 = 0.22" [1] "LS O2 vs. O2 Vol P: m = -31.8, r^2 = 0.54" [1] "HS O2 vs. O2 Cell T: m = 6.6, r^2 = 0.09" [1] "LS O2 vs. O2 Cell T: m = 15.4, r^2 = 0.49" [1] "HS O2 vs. CO2 Vol P: m = -30.3, r^2 = 0.4" [1] "LS O2 vs. CO2 Vol P: m = -24.8, r^2 = 0.28" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = -6.39, r^2 = 0.03" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = -1.34, r^2 = 0" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -30.3, r^2 = 0.4" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -24.8, r^2 = 0.28" [1] "HS O2 vs. LIH2O: m = -1240, r^2 = 0.29" [1] "LS O2 vs. LIH2O: m = 78, r^2 = 0" [1] "HS O2 vs. SLOPE: m = -0.548, r^2 = 0.4" [1] "LS O2 vs. SLOPE: m = -0.919, r^2 = 0.09" [1] "HS CO2 vs. Time: m = 14.678, r^2 = 0.9" [1] "LS CO2 vs. Time: m = 15.101, r^2 = 0.91" [1] "HS CO2 vs. Cylinder T: m = -0.33, r^2 = 0.02" [1] "LS CO2 vs. Cylinder T: m = 0.335, r^2 = 0.033" [1] "HS CO2 vs. Regulator T: m = -0.24, r^2 = 0.09" [1] "LS CO2 vs. Regulator T: m = -0.067, r^2 = 0.016" [1] "HS CO2 vs. Ref. Volumes T: m = -0.166, r^2 = 0.06" [1] "LS CO2 vs. Ref. Volumes T: m = -0.023, r^2 = 0.002" [1] "HS CO2 vs. Manifold T: m = -0.188, r^2 = 0.3" [1] "LS CO2 vs. Manifold T: m = -0.135, r^2 = 0.308" [1] "HS CO2 vs. Pump Box T: m = -0.125, r^2 = 0.2" [1] "LS CO2 vs. Pump Box T: m = -0.118, r^2 = 0.311" [1] "HS O2 vs. Cylinder T: m = -49.382, r^2 = 0.11" [1] "LS O2 vs. Cylinder T: m = -13.556, r^2 = 0.007" [1] "HS O2 vs. Regulator T: m = 6.609, r^2 = 0.02" [1] "LS O2 vs. Regulator T: m = 27.308, r^2 = 0.374" [1] "HS O2 vs. Ref. Volumes T: m = -11.275, r^2 = 0.07" [1] "LS O2 vs. Ref. Volumes T: m = 9.348, r^2 = 0.051" [1] "HS O2 vs. Manifold T: m = 10.894, r^2 = 0.27" [1] "LS O2 vs. Manifold T: m = 15.144, r^2 = 0.538" [1] "HS O2 vs. Pump Box T: m = 12.456, r^2 = 0.52" [1] "LS O2 vs. Pump Box T: m = 13.955, r^2 = 0.605" [1] "HS CO2 vs. WT P: m = -0.002, r^2 = 0.1" [1] "LS CO2 vs. WT P: m = -0.001, r^2 = 0.168" [1] "HS CO2 vs. SP P: m = -0.00162, r^2 = 0.15" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.067, r^2 = 0.38" [1] "HS CO2 vs. SP P comb with PACAB: m = -0.07, r^2 = 0.38" [1] "LS CO2 vs. SP P: m = -0.00138, r^2 = 0.19" [1] "LS CO2 vs. PACAB comb with SP P: m = 0.044, r^2 = 0.3" [1] "LS CO2 vs. SP P comb with PACAB: m = -0.042, r^2 = 0.3" [1] "HS CO2 vs. WT FL: m = -0.156, r^2 = 0.32" [1] "LS CO2 vs. WT FL: m = -0.078, r^2 = 0.186" [1] "HS CO2 vs. SP FL: m = 0.01, r^2 = 0.01" [1] "LS CO2 vs. SP FL: m = 0.022, r^2 = 0.065" [1] "HS O2 vs. SLPDIFF: m = 0.63, r^2 = 0.31" [1] "LS O2 vs. SLPDIFF: m = 1.593, r^2 = 0.078" [1] "HS O2 vs. WT P: m = 0.166, r^2 = 0.24" [1] "LS O2 vs. WT P: m = -0.075, r^2 = 0.063" [1] "HS O2 vs. SP P: m = 0.173, r^2 = 0.24" [1] "LS O2 vs. SP P: m = -0.068, r^2 = 0.061" [1] "HS O2 vs. WT FL: m = 3.391, r^2 = 0.04" [1] "LS O2 vs. WT FL: m = 8.056, r^2 = 0.272" [1] "HS O2 vs. SP FL: m = -3.222, r^2 = 0.16" [1] "LS O2 vs. SP FL: m = 2.598, r^2 = 0.13" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): 56.4, 56.94" [1] "Empirical LP O2 lag flow(s): 104, 85.4" [1] "Empirical LP CO2 lag time(s): 49.23, 49.77" [1] "Empirical LP CO2 lag flow(s): 104, 85.4" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.82" [1] "Median all HS CO2 SD = 0.83" [1] "Median all LS CO2 SD = 0.83" [1] "Median all LT CO2 SD = 0.82" [1] "Median all WT CO2 SD = 0.79" [1] "Median all HS or LS CO2 SD = 0.83" [1] "Median all cal O2 SD = 2.59" [1] "Median all HS O2 SD = 2.39" [1] "Median all LS O2 SD = 2.15" [1] "Median all LT O2 SD = 5.74" [1] "Median all WT O2 SD = 1.66" [1] "Median all HS or LS O2 SD = 2.34" [1] "Median all cal CO2 Slope = 0.01" [1] "Median all HS CO2 Slope = 0.04" [1] "Median all LS CO2 Slope = 0.07" [1] "Median all LT CO2 Slope = 0.05" [1] "Median all WT CO2 Slope = -0.13" [1] "Median all HS or LS CO2 Slope = 0.05" [1] "Median all cal O2 Slope = 0.58" [1] "Median all HS O2 Slope = 0.67" [1] "Median all LS O2 Slope = 1.16" [1] "Median all LT O2 Slope = 7.08" [1] "Median all WT O2 Slope = 0.24" [1] "Median all HS or LS O2 Slope = 0.82" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 9.62 per meg" [1] "Initial O2 Calibration Offset = -9.58 per meg" [1] "SD of O2 Calibration (post-takeoff) = 9.38 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = -18.94 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = -14.34 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using ATom1 RF02-RF11 inner 5/16\" inlet volumes" [1] "before any lag: 46698.25 89864.64" [1] "Time lag adjustments = 7 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 53.4 at 99.5 sccm" [1] "Median O2 delay + tlagff = 54.2 at 99.5 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 51.4 at 99.5 sccm" [1] "Median O2 delay from 3-way + tlagff = 52.2 at 99.5 sccm" [1] "after calc and ff lag: 46637.33 89797.94" [1] "2025-05-13 14:41:59 MDT" [1] "Calculating 1-sec interpolated values" [1] "Screened 12 1-Hz values because of data gaps at:" [1] 214.6610 214.6610 214.6611 214.6611 214.6611 214.6611 214.6611 214.6611 [9] 214.6611 214.6611 214.6611 214.6612 [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Not reporting 4284 O2 values from manual exclude period 214.603472222222 to 214.724212962963" [1] "Not reporting 4284 APO values from manual exclude period 214.603472222222 to 214.724212962963" [1] "Not reporting 567 O2 values from manual exclude period 214.733078703704 to 214.749027777778" [1] "Not reporting 567 APO values from manual exclude period 214.733078703704 to 214.749027777778" [1] "Not reporting 1460 O2 values from manual exclude period 214.999074074074 to 367" [1] "Not reporting 1460 APO values from manual exclude period 214.999074074074 to 367" [1] "Not reporting 202 O2 values from manual exclude period 214.810009 to 214.815701" [1] "Not reporting 202 APO values from manual exclude period 214.810009 to 214.815701" [1] "Not reporting 117 O2 values from manual exclude period 214.8166 to 214.819896" [1] "Not reporting 117 APO values from manual exclude period 214.8166 to 214.819896" [1] "Not reporting 384 O2 values from manual exclude period 214.824689 to 214.835475" [1] "Not reporting 384 APO values from manual exclude period 214.824689 to 214.835475" [1] "Not reporting 426 O2 values from manual exclude period 214.834277 to 214.846261" [1] "Not reporting 426 APO values from manual exclude period 214.834277 to 214.846261" [1] "Not reporting 736 O2 values from manual exclude period 214.898393 to 214.919066" [1] "Not reporting 736 APO values from manual exclude period 214.898393 to 214.919066" [1] "Not reporting 64 O2 values from manual exclude period 214.927155 to 214.928953" [1] "Not reporting 64 APO values from manual exclude period 214.927155 to 214.928953" [1] "Not reporting 444 O2 values from manual exclude period 214.956516 to 214.968501" [1] "Not reporting 444 APO values from manual exclude period 214.956516 to 214.968501" [1] "Not reporting 63 O2 values from manual exclude period 214.983481 to 214.985279" [1] "Not reporting 63 APO values from manual exclude period 214.983481 to 214.985279" [1] "Not reporting 106 O2 values from manual exclude period 215.003555 to 215.006551" [1] "Not reporting 106 APO values from manual exclude period 215.003555 to 215.006551" [1] "Not reporting 10344 smoothed O2 values from manual exclude period 214.60276178601 to 214.723597874483" [1] "Not reporting 10344 smoothed APO values from manual exclude period 214.60276178601 to 214.723597874483" [1] "Not reporting 1380 smoothed O2 values from manual exclude period 214.732450604837 to 214.748416278934" [1] "Not reporting 1380 smoothed APO values from manual exclude period 214.732450604837 to 214.748416278934" [1] "Not reporting 2479 smoothed O2 values from manual exclude period 214.998462708781 to 366.999227988419" [1] "Not reporting 2479 smoothed APO values from manual exclude period 214.998462708781 to 366.999227988419" [1] "Not reporting 491 smoothed O2 values from manual exclude period 214.809385895808 to 214.815062343639" [1] "Not reporting 491 smoothed APO values from manual exclude period 214.809385895808 to 214.815062343639" [1] "Not reporting 285 smoothed O2 values from manual exclude period 214.815951924172 to 214.8192530693" [1] "Not reporting 285 smoothed APO values from manual exclude period 214.815951924172 to 214.8192530693" [1] "Not reporting 934 smoothed O2 values from manual exclude period 214.824038587525 to 214.834847783879" [1] "Not reporting 934 smoothed APO values from manual exclude period 214.824038587525 to 214.834847783879" [1] "Not reporting 1037 smoothed O2 values from manual exclude period 214.833634739222 to 214.845639192572" [1] "Not reporting 1037 smoothed APO values from manual exclude period 214.833634739222 to 214.845639192572" [1] "Not reporting 1786 smoothed O2 values from manual exclude period 214.897778354035 to 214.918455306008" [1] "Not reporting 1786 smoothed APO values from manual exclude period 214.897778354035 to 214.918455306008" [1] "Not reporting 154 smoothed O2 values from manual exclude period 214.926530342762 to 214.928321522547" [1] "Not reporting 154 smoothed APO values from manual exclude period 214.926530342762 to 214.928321522547" [1] "Not reporting 1037 smoothed O2 values from manual exclude period 214.955881655577 to 214.967893404032" [1] "Not reporting 1037 smoothed APO values from manual exclude period 214.955881655577 to 214.967893404032" [1] "Not reporting 155 smoothed O2 values from manual exclude period 214.982715944292 to 214.984510691485" [1] "Not reporting 155 smoothed APO values from manual exclude period 214.982715944292 to 214.984510691485" [1] "Not reporting 257 smoothed O2 values from manual exclude period 215.002942955435 to 215.005922316073" [1] "Not reporting 257 smoothed APO values from manual exclude period 215.002942955435 to 215.005922316073" [1] "Not reporting 10344 smoothed O2 values from manual exclude period 214.60276178601 to 214.723597874483" [1] "Not reporting 10344 smoothed APO values from manual exclude period 214.60276178601 to 214.723597874483" [1] "Not reporting 1380 smoothed O2 values from manual exclude period 214.732450604837 to 214.748416278934" [1] "Not reporting 1380 smoothed APO values from manual exclude period 214.732450604837 to 214.748416278934" [1] "Not reporting 2479 smoothed O2 values from manual exclude period 214.998462708781 to 366.999227988419" [1] "Not reporting 2479 smoothed APO values from manual exclude period 214.998462708781 to 366.999227988419" [1] "Not reporting 491 smoothed O2 values from manual exclude period 214.809385895808 to 214.815062343639" [1] "Not reporting 491 smoothed APO values from manual exclude period 214.809385895808 to 214.815062343639" [1] "Not reporting 285 smoothed O2 values from manual exclude period 214.815951924172 to 214.8192530693" [1] "Not reporting 285 smoothed APO values from manual exclude period 214.815951924172 to 214.8192530693" [1] "Not reporting 934 smoothed O2 values from manual exclude period 214.824038587525 to 214.834847783879" [1] "Not reporting 934 smoothed APO values from manual exclude period 214.824038587525 to 214.834847783879" [1] "Not reporting 1037 smoothed O2 values from manual exclude period 214.833634739222 to 214.845639192572" [1] "Not reporting 1037 smoothed APO values from manual exclude period 214.833634739222 to 214.845639192572" [1] "Not reporting 1786 smoothed O2 values from manual exclude period 214.897778354035 to 214.918455306008" [1] "Not reporting 1786 smoothed APO values from manual exclude period 214.897778354035 to 214.918455306008" [1] "Not reporting 154 smoothed O2 values from manual exclude period 214.926530342762 to 214.928321522547" [1] "Not reporting 154 smoothed APO values from manual exclude period 214.926530342762 to 214.928321522547" [1] "Not reporting 1037 smoothed O2 values from manual exclude period 214.955881655577 to 214.967893404032" [1] "Not reporting 1037 smoothed APO values from manual exclude period 214.955881655577 to 214.967893404032" [1] "Not reporting 155 smoothed O2 values from manual exclude period 214.982715944292 to 214.984510691485" [1] "Not reporting 155 smoothed APO values from manual exclude period 214.982715944292 to 214.984510691485" [1] "Not reporting 257 smoothed O2 values from manual exclude period 215.002942955435 to 215.005922316073" [1] "Not reporting 257 smoothed APO values from manual exclude period 215.002942955435 to 215.005922316073" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1608/AO2_DC8_20160801_R6.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 146288 items [1] 2 3658 36572 [1] "done reading AO2" [1] 2016 2016 2016 2016 2016 2016 [1] 211 211 211 211 211 211 [1] 52390 52400 52410 52420 52430 52440 [1] "2016-07-29 14:33:10 UTC" "2016-07-29 14:33:20 UTC" [3] "2016-07-29 14:33:30 UTC" "2016-07-29 14:33:40 UTC" [5] "2016-07-29 14:33:50 UTC" "2016-07-29 14:34:00 UTC" [1] -331.855 -323.667 -327.769 -312.971 -306.666 -308.221 [1] 18319 [1] "Average Date / Time for slice RF02 = 2016-08-01 20:16:05.92839288711548" [1] "sum(lsel) = 1201" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 28.607 771.710 [1] 28.607 771.710 [1] 228.290 971.393 [1] 8.571429e-03 9.999990e+05 [1] "highestmid = 724.998" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM1 RF02 APO_AO2 range = -368.01,-297.95" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1608/AO2_DC8_20160801_R6.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 146288 items [1] 2 3658 36572 [1] "done reading AO2" [1] 2016 2016 2016 2016 2016 2016 [1] 211 211 211 211 211 211 [1] 52390 52400 52410 52420 52430 52440 [1] "2016-07-29 14:33:10 UTC" "2016-07-29 14:33:20 UTC" [3] "2016-07-29 14:33:30 UTC" "2016-07-29 14:33:40 UTC" [5] "2016-07-29 14:33:50 UTC" "2016-07-29 14:34:00 UTC" [1] -686.170 -664.361 -645.644 -620.863 -609.519 -607.167 [1] 18321 [1] "Average Date / Time for slice RF02 = 2016-08-01 20:16:16.6638934612274" [1] "sum(lsel) = 1202" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 28.607 771.710 [1] 28.607 771.710 [1] 228.290 971.393 [1] 8.571429e-03 9.999990e+05 [1] "highestmid = 724.998" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM1 RF02 O2_AO2 range = -632.45,-536.01" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item [1] "Reading /h/eol/stephens/NCAR/VUV2/AO2/DATA/1608/AO2_DC8_20160801_R6.ict" Read 2 items Read 4 items Read 2 items Read 3 items Read 1 item Read 1 item Read 3 items Read 3 items Read 1 item Read 1 item Read 4 items Read 146288 items [1] 2 3658 36572 [1] "done reading AO2" [1] 2016 2016 2016 2016 2016 2016 [1] 211 211 211 211 211 211 [1] 52390 52400 52410 52420 52430 52440 [1] "2016-07-29 14:33:10 UTC" "2016-07-29 14:33:20 UTC" [3] "2016-07-29 14:33:30 UTC" "2016-07-29 14:33:40 UTC" [5] "2016-07-29 14:33:50 UTC" "2016-07-29 14:34:00 UTC" [1] 417.4485 414.8557 410.5120 408.6122 407.6516 406.9080 [1] 26668 [1] "Average Date / Time for slice RF02 = 2016-08-01 19:20:43.1733236312866" [1] "sum(lsel) = 2729" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 28.607 783.146 [1] 28.607 783.146 [1] 216.854 971.393 [1] 1.387779e-16 9.999990e+05 [1] "highestmid = 724.999" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ATOM1 RF02 CO2_AO2 range = 393.88,405.04" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"