[1] "2025-05-13 14:12:01 MDT" options [1,] "file" "160125b" [2,] "flight" "RF06" [3,] "project" "ORCAS" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "300" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "11" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "aft" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "full" [48,] "o2caltype" "full" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "FALSE" [64,] "icartt" "0" [65,] "icarttrev" "0" [66,] "mmsrev" "TRUE" [67,] "usespline" "4pt" [68,] "updnave" "160125b" [1] "Reading in flight and plotting intervals" Read 15 records [1] "Reading in /scr/raf/stephens/AO2DAT/160125b.mr" Read 11908 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.25 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.25 seconds" [1] "New JOGEST = 2.25 seconds" [1] "New VALVE SKIP = 27 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/160125b.hr" Read 47635 records [1] "HR FILE MATCHES" [1] "Converting hrdata statout" [1] "Tue May 13 02:12:02 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30771 description: HS CO2 = 391.3 O2 = -452.6" [1] "position 2 cylinder OK30764 description: LS CO2 = 404.02 O2 = -715.2" [1] "position 3 cylinder OK30772 description: LT CO2 = 392.41 O2 = -581.9" [1] "position 4 cylinder OK30766 description: WT CO2 = 377.96 O2 = -528.4" [1] "position 5 cylinder OK30761 description: LP CO2 = 369.44 O2 = -819.5" [1] 391.3025 404.0230 392.4100 377.9574 369.4436 [1] -452.6143 -715.2115 -581.9304 -528.3608 -819.5255 [1] "Nominal linear calibrations:" [1] "co2scl = 1.027 co2off = 0.62 o2scla = -0.045 o2offa = -143" [1] "(dV/V)/(dXO2/XO2) = -4.625" [1] "(dV/V)/d(O2/N2) = -3.656" [1] "Reading in very high resolution timeseries" Read 238160 records [1] 238160 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 02:12:02 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 02:12:04 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.656" [1] "o2scaleavenew_drelVdrelP = -4.625" [1] "median(o2scalenew) = -3.671" [1] "Empirical dV/V vs dP/P relationship =-2.61, r^2 =0.022, damping =0.564" [1] "Tue May 13 02:12:04 PM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "MASKING 20 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 02:12:36 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "RECALC TIME MATCHES" [1] "Tue May 13 02:12:36 PM MDT 2025 done recreating mr o2diffs" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 216.957 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 84.786 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 78.441 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 17.632 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 0 [1] 66 [1] 86 [1] 86 [1] 86 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 157 25.65402 -1357.665854 994962.7 -1 [2,] 158 25.65405 -1069.395983 996369.0 1 [3,] 159 25.65408 -711.652994 995754.2 -1 [4,] 161 25.65413 -407.387787 996144.7 -1 [5,] 309 25.65820 -911.152349 1005389.7 -1 [6,] 310 25.65822 -710.392549 1006341.1 1 [7,] 311 25.65825 -476.131299 1005926.0 -1 [8,] 459 25.66232 -391.149414 1009363.7 -1 [9,] 460 25.66234 -682.632896 1009772.2 1 [10,] 461 25.66237 -1031.364011 1008717.6 -1 [11,] 535 25.66440 -1210.534636 1009507.7 -1 [12,] 536 25.66442 -751.988639 1010709.5 1 [13,] 537 25.66445 -315.464966 1010411.5 -1 [14,] 775 25.67065 -203.760360 1013614.3 -1 [15,] 776 25.67067 -401.673728 1013826.2 1 [16,] 777 25.67070 -719.513247 1013046.0 -1 [17,] 778 25.67073 -1054.034035 1013834.4 1 [18,] 779 25.67075 -1296.202071 1012524.3 -1 [19,] 855 25.67272 -1371.747022 1013004.2 -1 [20,] 856 25.67275 -1188.744428 1014406.5 1 [21,] 857 25.67277 -924.160750 1013521.6 -1 [22,] 859 25.67282 -454.493623 1013999.2 -1 [23,] 937 25.67483 -801.888960 1014635.7 -1 [24,] 1015 25.67684 -1139.317034 1015596.8 -1 [25,] 1016 25.67687 -868.442102 1016779.0 1 [26,] 1017 25.67689 -524.559807 1016283.8 -1 [27,] 1259 25.68334 -452.002253 1014687.9 -1 [28,] 1260 25.68337 -856.724103 1015130.6 1 [29,] 1261 25.68340 -1279.253207 1013799.0 -1 [30,] 1341 25.68559 -975.405317 1011771.2 -1 [31,] 1421 25.68778 -256.472804 1010232.9 -1 [32,] 1619 25.69299 -346.648942 1006354.9 -1 [33,] 1620 25.69302 -5.976425 1006676.1 1 [34,] 1621 25.69304 402.922228 1007116.9 -1 [35,] 1622 25.69307 745.833014 1006662.7 1 [36,] 1623 25.69310 951.239647 1007646.2 -1 [37,] 1647 25.69372 -628.248675 1005830.4 -1 [38,] 1648 25.69375 -339.986163 1006431.4 1 [39,] 1649 25.69377 135.613620 1006582.2 -1 [40,] 1650 25.69380 696.153001 1006364.8 1 [41,] 1651 25.69383 1149.551800 1007540.9 -1 [42,] 2819 25.72428 -914.785212 978293.4 -1 [43,] 2825 25.72444 -1333.019022 977834.0 -1 [44,] 2901 25.72641 -1401.088160 977151.7 -1 [45,] 2902 25.72643 -1104.967137 978505.3 1 [46,] 2903 25.72646 -764.000875 977796.0 -1 [47,] 2981 25.72847 -459.576644 977523.9 -1 [48,] 2982 25.72849 -787.073971 977966.7 1 [49,] 2983 25.72852 -1108.041630 976874.4 -1 [50,] 4623 25.77145 -924.523812 982037.5 -1 [51,] 4629 25.77161 -635.624410 982432.3 -1 [52,] 4703 25.77363 -414.212268 983477.4 -1 [53,] 4704 25.77366 -768.181092 983880.7 1 [54,] 4705 25.77369 -1174.713934 982712.4 -1 [55,] 5397 25.79262 -959.340846 988416.9 -1 [56,] 5477 25.79479 -1439.215998 988475.2 -1 [57,] 5478 25.79482 -1066.478695 989908.9 1 [58,] 5479 25.79485 -654.148290 989304.4 -1 [59,] 5555 25.79692 -774.586490 989738.7 -1 [60,] 6499 25.82272 -937.996371 992521.3 -1 [61,] 6505 25.82289 -555.882661 992993.3 -1 [62,] 6579 25.82491 -406.318471 993860.4 -1 [63,] 6580 25.82494 -816.675409 994276.7 1 [64,] 6581 25.82496 -1253.715100 993039.1 -1 [65,] 9133 25.89097 -892.006216 1002419.2 -1 [66,] 9217 25.89322 -1421.642258 1003541.8 -1 [67,] 9218 25.89325 -1062.508494 1004993.3 1 [68,] 9219 25.89327 -670.818596 1004380.2 -1 [69,] 9299 25.89542 -761.269930 1005509.7 -1 [70,] 10391 25.92395 -896.517656 1012555.5 -1 [71,] 10397 25.92411 -481.047175 1013021.5 -1 [72,] 10471 25.92600 -409.655044 1013294.7 -1 [73,] 10472 25.92603 -653.392828 1013701.8 1 [74,] 10473 25.92605 -972.447308 1012673.2 -1 [75,] 10475 25.92610 -1348.101467 1012338.0 -1 [76,] 11305 25.94859 -1062.989742 1013872.0 -1 [77,] 11679 25.95877 -251.637416 1007644.8 -1 [78,] 11680 25.95880 -739.117274 1007889.6 1 [79,] 11681 25.95883 -1272.981895 1006592.9 -1 [80,] 11755 25.96084 -1417.513164 1005110.2 -1 [81,] 11756 25.96086 -1140.770708 1006526.4 1 [82,] 11757 25.96089 -808.531323 1005729.6 -1 [83,] 11759 25.96094 -452.196827 1006032.0 -1 [84,] 11833 25.96293 -461.739491 1005120.7 -1 [85,] 11834 25.96296 -772.921814 1005573.8 1 [86,] 11835 25.96298 -1107.139739 1004443.6 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 2348 25.71198 388.554 [2,] 3674 25.74650 290.982 [3,] 7035 25.83687 97559970.000 [4,] 7079 25.83801 293.448 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 216.957 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 84.786 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 78.441 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 17.632 PER MEG" [1] 391.3025 404.0230 392.4100 377.9574 369.4436 [1] -452.6143 -715.2115 -581.9304 -528.3608 -819.5255 [1] "Nominal linear calibrations:" [1] "co2scl = 1.027 co2off = 0.62 o2scla = -0.045 o2offa = -143.1" [1] "(dV/V)/(dXO2/XO2) = -4.624" [1] "(dV/V)/d(O2/N2) = -3.656" [1] "Finding cal and sample periods" [1] "Median Cal: 2.94 minutes" [1] "Average Cal: 2.87 minutes" [1] "Shortest Cal: 0.12 minutes" [1] "Longest Cal: 5 minutes" [1] "Removed 2 calibration period(s) with less than 30 seconds of data" [1] "at: 14" [1] "at: 43" [1] "Reading in aircraft data" [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.0014" [1] "HS CO2 vs. PACAB: m = 0.00171, r^2 = 0.19" [1] "LS CO2 vs. PACAB: m = -0.00451, r^2 = 0.37" [1] "HS+LS LIH2O vs. PACAB: m = -9.88e-05" [1] "HS LIH2O vs. PACAB: m = -9.85e-05, r^2 = 0.83" [1] "LS LIH2O vs. PACAB: m = -9.91e-05, r^2 = 0.88" [1] "HS+LS CO2 vs. LIH2O: m = 34" [1] "HS CO2 vs. LIH2O: m = 26.8, r^2 = 0.41" [1] "LS CO2 vs. LIH2O: m = 41.3, r^2 = 0.56" [1] "APCO2 vs. PACAB: m = 0.0699, r^2 = 0.56" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = -0.121" [1] "HS O2 vs. PACAB: m = -0.117, r^2 = 0.21" [1] "LS O2 vs. PACAB: m = -0.125, r^2 = 0.45" [1] "HS+LS O2 vs. LIH2O: m = 661" [1] "HS O2 vs. LIH2O: m = 264, r^2 = 0.02" [1] "LS O2 vs. LIH2O: m = 1060, r^2 = 0.56" [1] "HS+LS O2 vs. PAO2: m = -5.17" [1] "HS O2 vs. PAO2: m = -13.5, r^2 = 0.28" [1] "LS O2 vs. PAO2: m = 3.19, r^2 = 0.02" [1] "HS+LS O2 vs. TPBOX: m = -1.7" [1] "HS O2 vs. TPBOX: m = -3.62, r^2 = 0.24" [1] "LS O2 vs. TPBOX: m = 0.217, r^2 = 0" [1] "APO vs. PACAB: m = -1.38, r^2 = 0.56" [1] "APO vs. PAO2: m = 10.7, r^2 = 0" [1] "APO vs. TPBOX: m = -21.6, r^2 = 0.03" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 2.67, r^2 = 0.35" [1] "LS CO2 vs. LiCor Cell P: m = 2.04, r^2 = 0.07" [1] "HS CO2 vs. CO2 Vol P: m = 0.389, r^2 = 0.73" [1] "LS CO2 vs. CO2 Vol P: m = 0.175, r^2 = 0.07" [1] "HS CO2 vs. SLOPE: m = 0.0834, r^2 = 0" [1] "LS CO2 vs. SLOPE: m = -0.822, r^2 = 0.41" [1] "HS O2 vs. O2 Vol P: m = -7.89, r^2 = 0.06" [1] "LS O2 vs. O2 Vol P: m = 4.18, r^2 = 0.02" [1] "HS O2 vs. O2 Cell T: m = 0.27, r^2 = 0" [1] "LS O2 vs. O2 Cell T: m = -3.68, r^2 = 0.07" [1] "HS O2 vs. CO2 Vol P: m = -10.8, r^2 = 0.1" [1] "LS O2 vs. CO2 Vol P: m = 2.49, r^2 = 0.01" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = 2.01, r^2 = 0" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = -7.53, r^2 = 0.07" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -10.8, r^2 = 0.1" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = 2.49, r^2 = 0.01" [1] "HS O2 vs. LIH2O: m = 362, r^2 = 0.02" [1] "LS O2 vs. LIH2O: m = 1090, r^2 = 0.27" [1] "HS O2 vs. SLOPE: m = -1.77, r^2 = 0.6" [1] "LS O2 vs. SLOPE: m = 0.355, r^2 = 0.05" [1] "HS CO2 vs. Time: m = 16.589, r^2 = 0.93" [1] "LS CO2 vs. Time: m = 17.064, r^2 = 0.91" [1] "HS CO2 vs. Cylinder T: m = 0.273, r^2 = 0.03" [1] "LS CO2 vs. Cylinder T: m = 0.044, r^2 = 0" [1] "HS CO2 vs. Regulator T: m = -0.261, r^2 = 0.48" [1] "LS CO2 vs. Regulator T: m = -0.373, r^2 = 0.469" [1] "HS CO2 vs. Ref. Volumes T: m = 0.049, r^2 = 0.01" [1] "LS CO2 vs. Ref. Volumes T: m = 0.078, r^2 = 0.005" [1] "HS CO2 vs. Manifold T: m = -0.103, r^2 = 0.24" [1] "LS CO2 vs. Manifold T: m = -0.014, r^2 = 0.002" [1] "HS CO2 vs. Pump Box T: m = -0.025, r^2 = 0.04" [1] "LS CO2 vs. Pump Box T: m = -0.047, r^2 = 0.086" [1] "HS O2 vs. Cylinder T: m = -20.89, r^2 = 0.03" [1] "LS O2 vs. Cylinder T: m = 9.167, r^2 = 0.009" [1] "HS O2 vs. Regulator T: m = -12.541, r^2 = 0.2" [1] "LS O2 vs. Regulator T: m = -10.795, r^2 = 0.25" [1] "HS O2 vs. Ref. Volumes T: m = -7.322, r^2 = 0.04" [1] "LS O2 vs. Ref. Volumes T: m = -17.723, r^2 = 0.176" [1] "HS O2 vs. Manifold T: m = 2.514, r^2 = 0.03" [1] "LS O2 vs. Manifold T: m = -0.7, r^2 = 0.003" [1] "HS O2 vs. Pump Box T: m = -3.572, r^2 = 0.14" [1] "LS O2 vs. Pump Box T: m = 0.055, r^2 = 0" [1] "HS CO2 vs. WT P: m = -0.001, r^2 = 0.07" [1] "LS CO2 vs. WT P: m = -0.002, r^2 = 0.091" [1] "HS CO2 vs. SP P: m = 8.74e-06, r^2 = 0" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.009, r^2 = 0.04" [1] "HS CO2 vs. SP P comb with PACAB: m = -0.01, r^2 = 0.04" [1] "LS CO2 vs. SP P: m = -0.00287, r^2 = 0.2" [1] "LS CO2 vs. PACAB comb with SP P: m = -0.127, r^2 = 0.25" [1] "LS CO2 vs. SP P comb with PACAB: m = 0.124, r^2 = 0.25" [1] "HS CO2 vs. WT FL: m = -0.105, r^2 = 0.27" [1] "LS CO2 vs. WT FL: m = -0.082, r^2 = 0.058" [1] "HS CO2 vs. SP FL: m = 0.005, r^2 = 0" [1] "LS CO2 vs. SP FL: m = 0.058, r^2 = 0.113" [1] "HS O2 vs. SLPDIFF: m = -0.761, r^2 = 0.02" [1] "LS O2 vs. SLPDIFF: m = 0.742, r^2 = 0.171" [1] "HS O2 vs. WT P: m = -0.031, r^2 = 0.01" [1] "LS O2 vs. WT P: m = -0.109, r^2 = 0.166" [1] "HS O2 vs. SP P: m = -0.114, r^2 = 0.12" [1] "LS O2 vs. SP P: m = -0.119, r^2 = 0.198" [1] "HS O2 vs. WT FL: m = 1.456, r^2 = 0.01" [1] "LS O2 vs. WT FL: m = -6.451, r^2 = 0.23" [1] "HS O2 vs. SP FL: m = 2.996, r^2 = 0.14" [1] "LS O2 vs. SP FL: m = 1.587, r^2 = 0.053" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): 71.25, 59.42" [1] "Empirical LP O2 lag flow(s): 103.5, 101.2" [1] "Empirical LP CO2 lag time(s): 69, 57.09" [1] "Empirical LP CO2 lag flow(s): 103.5, 101.2" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.78" [1] "Median all HS CO2 SD = 0.81" [1] "Median all LS CO2 SD = 0.81" [1] "Median all LT CO2 SD = 0.77" [1] "Median all WT CO2 SD = 0.77" [1] "Median all HS or LS CO2 SD = 0.81" [1] "Median all cal O2 SD = 1.94" [1] "Median all HS O2 SD = 1.7" [1] "Median all LS O2 SD = 1.6" [1] "Median all LT O2 SD = 2.12" [1] "Median all WT O2 SD = 1.99" [1] "Median all HS or LS O2 SD = 1.67" [1] "Median all cal CO2 Slope = -0.01" [1] "Median all HS CO2 Slope = 0.04" [1] "Median all LS CO2 Slope = 0.01" [1] "Median all LT CO2 Slope = 0.16" [1] "Median all WT CO2 Slope = -0.05" [1] "Median all HS or LS CO2 Slope = 0.02" [1] "Median all cal O2 Slope = 0.21" [1] "Median all HS O2 Slope = 0.15" [1] "Median all LS O2 Slope = 0.89" [1] "Median all LT O2 Slope = 0.7" [1] "Median all WT O2 Slope = -0.06" [1] "Median all HS or LS O2 Slope = 0.35" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 8.05 per meg" [1] "Initial O2 Calibration Offset = -14.95 per meg" [1] "SD of O2 Calibration (post-takeoff) = 3.69 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = -20.02 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = -14.09 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using ORCAS inlet volumes" [1] "before any lag: 56135.12 83372.98" [1] "Time lag adjustments = 11 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 54 at 103.6 sccm" [1] "Median O2 delay + tlagff = 54.8 at 103.6 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 53.9 at 103.6 sccm" [1] "Median O2 delay from 3-way + tlagff = 54.7 at 103.6 sccm" [1] "after calc and ff lag: 56069.81 83306.79" [1] "2025-05-13 14:13:10 MDT" [1] "Calculating 1-sec interpolated values" [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Outputting data files" [1] "Not reporting 55 O2 values from manual exclude period 25.775162 to 25.776674" [1] "Not reporting 55 APO values from manual exclude period 25.775162 to 25.776674" [1] "Not reporting 62 O2 values from manual exclude period 25.778376 to 25.780077" [1] "Not reporting 62 APO values from manual exclude period 25.778376 to 25.780077" [1] "Not reporting 138 O2 values from manual exclude period 25.784047 to 25.787828" [1] "Not reporting 138 APO values from manual exclude period 25.784047 to 25.787828" [1] "Not reporting 42 O2 values from manual exclude period 25.791799 to 25.792933" [1] "Not reporting 42 APO values from manual exclude period 25.791799 to 25.792933" [1] "Not reporting 48 O2 values from manual exclude period 25.800495 to 25.801818" [1] "Not reporting 48 APO values from manual exclude period 25.800495 to 25.801818" [1] "Not reporting 42 O2 values from manual exclude period 25.899179 to 25.900314" [1] "Not reporting 42 APO values from manual exclude period 25.899179 to 25.900314" [1] "Not reporting 97 O2 values from manual exclude period 25.927537 to 25.930184" [1] "Not reporting 97 APO values from manual exclude period 25.927537 to 25.930184" [1] "Not reporting 129 smoothed O2 values from manual exclude period 25.7745540969256 to 25.7760479348216" [1] "Not reporting 129 smoothed APO values from manual exclude period 25.7745540969256 to 25.7760479348216" [1] "Not reporting 147 smoothed O2 values from manual exclude period 25.7777432402453 to 25.7794528894491" [1] "Not reporting 147 smoothed APO values from manual exclude period 25.7777432402453 to 25.7794528894491" [1] "Not reporting 327 smoothed O2 values from manual exclude period 25.7834151215041 to 25.7872048367775" [1] "Not reporting 327 smoothed APO values from manual exclude period 25.7834151215041 to 25.7872048367775" [1] "Not reporting 101 smoothed O2 values from manual exclude period 25.7911669920329 to 25.7923330299678" [1] "Not reporting 101 smoothed APO values from manual exclude period 25.7911669920329 to 25.7923330299678" [1] "Not reporting 113 smoothed O2 values from manual exclude period 25.7998950415501 to 25.8011928300319" [1] "Not reporting 113 smoothed APO values from manual exclude period 25.7998950415501 to 25.8011928300319" [1] "Not reporting 96 smoothed O2 values from manual exclude period 25.8985797635251 to 25.8996921256089" [1] "Not reporting 96 smoothed APO values from manual exclude period 25.8985797635251 to 25.8996921256089" [1] "Not reporting 227 smoothed O2 values from manual exclude period 25.9269319558602 to 25.9295570249662" [1] "Not reporting 227 smoothed APO values from manual exclude period 25.9269319558602 to 25.9295570249662" [1] "Not reporting 129 smoothed O2 values from manual exclude period 25.7745540969256 to 25.7760479348216" [1] "Not reporting 129 smoothed APO values from manual exclude period 25.7745540969256 to 25.7760479348216" [1] "Not reporting 147 smoothed O2 values from manual exclude period 25.7777432402453 to 25.7794528894491" [1] "Not reporting 147 smoothed APO values from manual exclude period 25.7777432402453 to 25.7794528894491" [1] "Not reporting 327 smoothed O2 values from manual exclude period 25.7834151215041 to 25.7872048367775" [1] "Not reporting 327 smoothed APO values from manual exclude period 25.7834151215041 to 25.7872048367775" [1] "Not reporting 101 smoothed O2 values from manual exclude period 25.7911669920329 to 25.7923330299678" [1] "Not reporting 101 smoothed APO values from manual exclude period 25.7911669920329 to 25.7923330299678" [1] "Not reporting 113 smoothed O2 values from manual exclude period 25.7998950415501 to 25.8011928300319" [1] "Not reporting 113 smoothed APO values from manual exclude period 25.7998950415501 to 25.8011928300319" [1] "Not reporting 96 smoothed O2 values from manual exclude period 25.8985797635251 to 25.8996921256089" [1] "Not reporting 96 smoothed APO values from manual exclude period 25.8985797635251 to 25.8996921256089" [1] "Not reporting 227 smoothed O2 values from manual exclude period 25.9269319558602 to 25.9295570249662" [1] "Not reporting 227 smoothed APO values from manual exclude period 25.9269319558602 to 25.9295570249662" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item Read 21961 records [1] 6 2192 21961 [1] "done reading AO2" [1] 2016 2016 2016 2016 2016 2016 [1] 5 5 5 5 5 5 [1] 69158 69164 69174 69184 69194 69204 [1] "2016-01-05 19:12:38 UTC" "2016-01-05 19:12:44 UTC" [3] "2016-01-05 19:12:54 UTC" "2016-01-05 19:13:04 UTC" [5] "2016-01-05 19:13:14 UTC" "2016-01-05 19:13:24 UTC" [1] -301.49 -307.23 -306.56 -310.03 -312.49 -304.86 [1] 28610 [1] "Average Date / Time for slice RF06 = 2016-01-25 19:43:31.4009163379669" [1] "sum(lsel) = 1746" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 15.21997 821.89758 [1] 15.21997 821.89758 [1] 178.1024 984.7800 [1] 1.171971e-03 9.999990e+05 [1] "highestmid = 698.987372" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ORCAS RF06 APO_AO2 range = -343.2,-274.27" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 21961 records [1] 6 2192 21961 [1] "done reading AO2" [1] 2016 2016 2016 2016 2016 2016 [1] 5 5 5 5 5 5 [1] 69158 69164 69174 69184 69194 69204 [1] "2016-01-05 19:12:38 UTC" "2016-01-05 19:12:44 UTC" [3] "2016-01-05 19:12:54 UTC" "2016-01-05 19:13:04 UTC" [5] "2016-01-05 19:13:14 UTC" "2016-01-05 19:13:24 UTC" [1] -616.74 -615.88 -612.65 -613.33 -605.02 -591.01 [1] 28619 [1] "Average Date / Time for slice RF06 = 2016-01-25 19:43:32.1694333553314" [1] "sum(lsel) = 1747" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 15.21997 821.89758 [1] 15.21997 821.89758 [1] 178.1024 984.7800 [1] 1.171971e-03 9.999990e+05 [1] "highestmid = 698.987372" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ORCAS RF06 O2_AO2 range = -609.18,-535.54" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 21961 records [1] 6 2192 21961 [1] "done reading AO2" [1] 2016 2016 2016 2016 2016 2016 [1] 5 5 5 5 5 5 [1] 69158 69164 69174 69184 69194 69204 [1] "2016-01-05 19:12:38 UTC" "2016-01-05 19:12:44 UTC" [3] "2016-01-05 19:12:54 UTC" "2016-01-05 19:13:04 UTC" [5] "2016-01-05 19:13:14 UTC" "2016-01-05 19:13:24 UTC" [1] 410.011 408.755 408.268 407.738 405.688 404.472 [1] 32773 [1] "Average Date / Time for slice RF06 = 2016-01-25 19:42:55.6193089485168" [1] "sum(lsel) = 1823" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 15.21997 821.89758 [1] 15.21997 821.89758 [1] 178.1024 984.7800 [1] 1.171971e-03 9.999990e+05 [1] "highestmid = 698.987372" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ORCAS RF06 CO2_AO2 range = 396.67,401.37" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 6 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"