[1] "2025-05-13 14:07:35 MDT" options [1,] "file" "160121a" [2,] "flight" "RF03" [3,] "project" "ORCAS" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "1000" [7,] "spspco" "1000" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "11" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "aft" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "full" [48,] "o2caltype" "full" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "FALSE" [64,] "icartt" "0" [65,] "icarttrev" "0" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "160121a" [1] "Reading in flight and plotting intervals" Read 18 records [1] "Reading in /scr/raf/stephens/AO2DAT/160121a.mr" Read 14248 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.25 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.26 seconds" [1] "New JOGEST = 2.26 seconds" [1] "New VALVE SKIP = 27 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/160121a.hr" Read 56994 records [1] "HR FILE LENGTH NOT NSWITCH * MRDATA FILE LENGTH" [1] 14248 56994 [1] "HR FILE LENGTH NOT MULTIPLE OF NSWITCH" [1] 14248 56994 [1] "Converting hrdata statout" [1] "Tue May 13 02:07:35 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30771 description: HS CO2 = 391.3 O2 = -452.9" [1] "position 2 cylinder OK30764 description: LS CO2 = 404.02 O2 = -715.4" [1] "position 3 cylinder OK30772 description: LT CO2 = 392.41 O2 = -582.2" [1] "position 4 cylinder OK30762 description: WT CO2 = 410.62 O2 = -688.7" [1] "position 5 cylinder OK30761 description: LP CO2 = 369.44 O2 = -819.3" [1] 391.3020 404.0215 392.4100 410.6170 369.4412 [1] -452.8965 -715.4241 -582.1660 -688.7000 -819.3288 [1] "Nominal linear calibrations:" [1] "co2scl = 1.064 co2off = -12.3 o2scla = -0.044 o2offa = -172.7" [1] "(dV/V)/(dXO2/XO2) = -4.808" [1] "(dV/V)/d(O2/N2) = -3.801" [1] "Reading in very high resolution timeseries" Read 284960 records [1] 284960 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 02:07:36 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 02:07:37 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.801" [1] "o2scaleavenew_drelVdrelP = -4.808" [1] "median(o2scalenew) = -3.8" [1] "Empirical dV/V vs dP/P relationship =-2.641, r^2 =0.092, damping =0.549" [1] "Tue May 13 02:07:38 PM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "MASKING 0 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "TRYING AGAIN, MASKING 40 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 02:08:23 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 939931.7976 SECONDS" [1] "Tue May 13 02:08:23 PM MDT 2025 done recreating mr o2diffs" [1] "Removed 4 medium-rate record(s) with accumulation errors" [1] "Removed 88 medium-rate record(s) from calbreak period" [1] "from: 662" [1] "to: 749" [1] "Removed 14 medium-rate record(s) from calbreak period" [1] "from: 1336" [1] "to: 1349" [1] "Removed 14 medium-rate record(s) from screenall period" [1] "from: 1336" [1] "to: 1349" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 1700 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 1514.225 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 1515.736 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 1515.367 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -24.846 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 14 [1] 27 [1] 35 [1] 35 [1] 38 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 538 21.59797 -2016.5231 1143230.7 -1 [2,] 539 21.59800 -1522.9244 1145506.1 1 [3,] 540 21.59803 -1077.9139 1144282.1 -1 [4,] 660 21.60131 -884.9957 1142565.0 -1 [5,] 661 21.60134 -1033.7063 1143527.3 1 [6,] 662 21.61205 14818.6999 1108285.8 -1 [7,] 663 21.61208 962.6496 1109044.3 1 [8,] 664 21.61211 -7028.9205 1105636.8 -1 [9,] 665 21.61213 -3014.3645 1107558.6 1 [10,] 666 21.61216 -943.7248 1104935.2 -1 [11,] 667 21.61219 -1954.9196 1107276.7 1 [12,] 1236 21.62829 -1726.9149 1104864.5 -1 [13,] 1237 21.62833 -1736.5743 1106212.5 1 [14,] 1238 21.62835 -1732.1809 1103809.5 -1 [15,] 1239 21.62838 -1713.5041 1105179.5 1 [16,] 1240 21.62841 -1699.1549 1102782.0 -1 [17,] 1334 21.63104 -2198.3297 1105726.7 -1 [18,] 1335 21.63107 -1601.1559 1107346.5 1 [19,] 1336 21.64042 -1636.2093 1089449.4 -1 [20,] 1337 21.64045 -1626.0277 1091388.7 1 [21,] 1570 21.64662 -1612.4394 1094561.1 -1 [22,] 1816 21.65330 -1480.4715 1094462.9 -1 [23,] 1817 21.65335 -1317.6614 1096627.1 1 [24,] 1818 21.65339 -1267.0810 1095631.8 -1 [25,] 1841 21.65399 -1612.8653 1095839.3 1 [26,] 1842 21.65402 -1571.3097 1093548.3 -1 [27,] 1843 21.65405 -1535.0472 1094823.7 1 [28,] 2102 21.66078 -1596.9907 1091841.3 -1 [29,] 2103 21.66080 -1609.7201 1093110.3 1 [30,] 2104 21.66083 -1637.6397 1090832.2 -1 [31,] 2984 21.68378 -1625.2577 1077596.9 -1 [32,] 3598 21.69979 -1671.0633 1068448.6 -1 [33,] 6062 21.76463 -1817.4366 1010233.2 -1 [34,] 8226 21.82079 -1782.2959 976282.7 -1 [35,] 10570 21.88341 -1647.9451 955930.2 -1 [36,] 11840 21.91815 -1594.7123 952961.6 -1 [37,] 13496 21.96178 -1697.6821 914727.6 -1 [38,] 13901 21.97280 -1441.3403 914593.6 1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 3587 21.69951 289.687 [2,] 9606 21.85823 10057.560 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 523.845 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 190.55 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 176.009 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -24.846 PER MEG" [1] "Screened 456 CO2 values from screenco2 period 21.6182 to 21.635" [1] 391.3020 404.0215 392.4100 410.6170 369.4412 [1] -452.8965 -715.4241 -582.1660 -688.7000 -819.3288 [1] "Nominal linear calibrations:" [1] "co2scl = 1.073 co2off = -15.56 o2scla = -0.044 o2offa = -172.7" [1] "(dV/V)/(dXO2/XO2) = -4.804" [1] "(dV/V)/d(O2/N2) = -3.798" [1] "Finding cal and sample periods" [1] "Median Cal: 2.94 minutes" [1] "Average Cal: 2.86 minutes" [1] "Shortest Cal: 0.2 minutes" [1] "Longest Cal: 4.99 minutes" [1] "Removed 4 calibration period(s) with less than 30 seconds of data" [1] "at: 9" [1] "at: 13" [1] "at: 37" [1] "at: 41" [1] "Reading in aircraft data" [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = 0.00214" [1] "HS CO2 vs. PACAB: m = 0.000183, r^2 = 0" [1] "LS CO2 vs. PACAB: m = 0.00409, r^2 = 0.4" [1] "HS+LS LIH2O vs. PACAB: m = -0.000103" [1] "HS LIH2O vs. PACAB: m = -0.000103, r^2 = 0.9" [1] "LS LIH2O vs. PACAB: m = -0.000103, r^2 = 0.82" [1] "HS+LS CO2 vs. LIH2O: m = -5.82" [1] "HS CO2 vs. LIH2O: m = 7.08, r^2 = 0.03" [1] "LS CO2 vs. LIH2O: m = -18.7, r^2 = 0.11" [1] "APCO2 vs. PACAB: m = 0.0789, r^2 = 0.54" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = -0.00939" [1] "HS O2 vs. PACAB: m = -0.029, r^2 = 0.01" [1] "LS O2 vs. PACAB: m = 0.0102, r^2 = 0" [1] "HS+LS O2 vs. LIH2O: m = -489" [1] "HS O2 vs. LIH2O: m = -322, r^2 = 0.02" [1] "LS O2 vs. LIH2O: m = -657, r^2 = 0.13" [1] "HS+LS O2 vs. PAO2: m = -13.3" [1] "HS O2 vs. PAO2: m = -20.5, r^2 = 0.1" [1] "LS O2 vs. PAO2: m = -6.15, r^2 = 0.01" [1] "HS+LS O2 vs. TPBOX: m = 2.77" [1] "HS O2 vs. TPBOX: m = 1.57, r^2 = 0.02" [1] "LS O2 vs. TPBOX: m = 3.96, r^2 = 0.23" [1] "APO vs. PACAB: m = -1.69, r^2 = 0.54" [1] "APO vs. PAO2: m = -168, r^2 = 0.19" [1] "APO vs. TPBOX: m = 2.95, r^2 = 0" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 3.74, r^2 = 0.39" [1] "LS CO2 vs. LiCor Cell P: m = 3.63, r^2 = 0.22" [1] "HS CO2 vs. CO2 Vol P: m = 0.65, r^2 = 0.42" [1] "LS CO2 vs. CO2 Vol P: m = 0.596, r^2 = 0.24" [1] "HS CO2 vs. SLOPE: m = -0.107, r^2 = 0.02" [1] "LS CO2 vs. SLOPE: m = 0.0631, r^2 = 0" [1] "HS O2 vs. O2 Vol P: m = -16.2, r^2 = 0.07" [1] "LS O2 vs. O2 Vol P: m = -3.63, r^2 = 0" [1] "HS O2 vs. O2 Cell T: m = 4.1, r^2 = 0.06" [1] "LS O2 vs. O2 Cell T: m = -3.07, r^2 = 0.02" [1] "HS O2 vs. CO2 Vol P: m = -2.78, r^2 = 0" [1] "LS O2 vs. CO2 Vol P: m = -11.6, r^2 = 0.06" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = -5.52, r^2 = 0.01" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = 5.95, r^2 = 0.01" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -2.78, r^2 = 0" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -11.6, r^2 = 0.06" [1] "HS O2 vs. LIH2O: m = -64.5, r^2 = 0" [1] "LS O2 vs. LIH2O: m = -562, r^2 = 0.05" [1] "HS O2 vs. SLOPE: m = -0.728, r^2 = 0.18" [1] "LS O2 vs. SLOPE: m = -0.505, r^2 = 0.21" [1] "HS CO2 vs. Time: m = 20.335, r^2 = 0.96" [1] "LS CO2 vs. Time: m = 20.405, r^2 = 0.97" [1] "HS CO2 vs. Cylinder T: m = -3.286, r^2 = 0.34" [1] "LS CO2 vs. Cylinder T: m = -1.576, r^2 = 0.053" [1] "HS CO2 vs. Regulator T: m = -0.256, r^2 = 0.1" [1] "LS CO2 vs. Regulator T: m = 0.246, r^2 = 0.087" [1] "HS CO2 vs. Ref. Volumes T: m = 0.449, r^2 = 0.26" [1] "LS CO2 vs. Ref. Volumes T: m = 0.216, r^2 = 0.029" [1] "HS CO2 vs. Manifold T: m = -0.089, r^2 = 0.04" [1] "LS CO2 vs. Manifold T: m = -0.248, r^2 = 0.135" [1] "HS CO2 vs. Pump Box T: m = 0.015, r^2 = 0" [1] "LS CO2 vs. Pump Box T: m = 0.157, r^2 = 0.306" [1] "HS O2 vs. Cylinder T: m = 26.227, r^2 = 0.01" [1] "LS O2 vs. Cylinder T: m = 19.482, r^2 = 0.005" [1] "HS O2 vs. Regulator T: m = 7.899, r^2 = 0.05" [1] "LS O2 vs. Regulator T: m = 16.261, r^2 = 0.231" [1] "HS O2 vs. Ref. Volumes T: m = 8.073, r^2 = 0.04" [1] "LS O2 vs. Ref. Volumes T: m = -2.213, r^2 = 0.002" [1] "HS O2 vs. Manifold T: m = 4.703, r^2 = 0.05" [1] "LS O2 vs. Manifold T: m = 0.604, r^2 = 0" [1] "HS O2 vs. Pump Box T: m = 1.761, r^2 = 0.02" [1] "LS O2 vs. Pump Box T: m = 4.46, r^2 = 0.152" [1] "HS CO2 vs. WT P: m = 0.002, r^2 = 0.11" [1] "LS CO2 vs. WT P: m = 0.004, r^2 = 0.404" [1] "HS CO2 vs. SP P: m = 0.00167, r^2 = 0.14" [1] "HS CO2 vs. PACAB comb with SP P: m = -0.023, r^2 = 0.14" [1] "HS CO2 vs. SP P comb with PACAB: m = 0.025, r^2 = 0.14" [1] "LS CO2 vs. SP P: m = 0.00411, r^2 = 0.43" [1] "LS CO2 vs. PACAB comb with SP P: m = 0.146, r^2 = 0.6" [1] "LS CO2 vs. SP P comb with PACAB: m = -0.141, r^2 = 0.6" [1] "HS CO2 vs. WT FL: m = 0.17, r^2 = 0.18" [1] "LS CO2 vs. WT FL: m = 0.119, r^2 = 0.053" [1] "HS CO2 vs. SP FL: m = -0.029, r^2 = 0.03" [1] "LS CO2 vs. SP FL: m = -0.131, r^2 = 0.399" [1] "HS O2 vs. SLPDIFF: m = 0.533, r^2 = 0.04" [1] "LS O2 vs. SLPDIFF: m = 0.5, r^2 = 0.045" [1] "HS O2 vs. WT P: m = -0.05, r^2 = 0.03" [1] "LS O2 vs. WT P: m = -0.017, r^2 = 0.004" [1] "HS O2 vs. SP P: m = -0.058, r^2 = 0.04" [1] "LS O2 vs. SP P: m = -0.016, r^2 = 0.003" [1] "HS O2 vs. WT FL: m = 3.621, r^2 = 0.04" [1] "LS O2 vs. WT FL: m = 3.833, r^2 = 0.034" [1] "HS O2 vs. SP FL: m = 2.011, r^2 = 0.06" [1] "LS O2 vs. SP FL: m = 0.467, r^2 = 0.003" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): 54.14, 64.31" [1] "Empirical LP O2 lag flow(s): 101.6, 106.2" [1] "Empirical LP CO2 lag time(s): 49.3, 50.31" [1] "Empirical LP CO2 lag flow(s): 101.6, 106.2" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.84" [1] "Median all HS CO2 SD = 0.84" [1] "Median all LS CO2 SD = 0.81" [1] "Median all LT CO2 SD = 0.8" [1] "Median all WT CO2 SD = 0.89" [1] "Median all HS or LS CO2 SD = 0.84" [1] "Median all cal O2 SD = 2.98" [1] "Median all HS O2 SD = 2.75" [1] "Median all LS O2 SD = 3.43" [1] "Median all LT O2 SD = 3.28" [1] "Median all WT O2 SD = 2.45" [1] "Median all HS or LS O2 SD = 2.84" [1] "Median all cal CO2 Slope = 0.01" [1] "Median all HS CO2 Slope = -0.04" [1] "Median all LS CO2 Slope = 0.04" [1] "Median all LT CO2 Slope = 0.13" [1] "Median all WT CO2 Slope = 0.02" [1] "Median all HS or LS CO2 Slope = -0.01" [1] "Median all cal O2 Slope = 1.13" [1] "Median all HS O2 Slope = 1.13" [1] "Median all LS O2 Slope = 1.94" [1] "Median all LT O2 Slope = 2.52" [1] "Median all WT O2 Slope = 0.01" [1] "Median all HS or LS O2 Slope = 1.39" [1] "Broke calibration interpolation before 21.601339 and after 21.612049" [1] "Broke calibration interpolation before 21.631071 and after 21.640016" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 4.41 per meg" [1] "Initial O2 Calibration Offset = 6.08 per meg" [1] "SD of O2 Calibration (post-takeoff) = 2.93 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = 6.69 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = 6.52 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using ORCAS inlet volumes" [1] "before any lag: 50391.24 84588.11" [1] "Time lag adjustments = 11 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 56.3 at 106.1 sccm" [1] "Median O2 delay + tlagff = 57 at 106.1 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 53.1 at 106.1 sccm" [1] "Median O2 delay from 3-way + tlagff = 53.9 at 106.1 sccm" [1] "after calc and ff lag: 50324.4 84526.07" [1] "2025-05-13 14:09:04 MDT" [1] "Calculating 1-sec interpolated values" [1] "Screened 800 1-Hz values because of data gaps at:" [1] 21.63050 21.63051 21.63052 21.63053 21.63054 21.63056 21.63057 21.63058 [9] 21.63059 21.63060 21.63061 21.63062 21.63064 21.63065 21.63066 21.63067 [17] 21.63068 21.63069 21.63071 21.63072 21.63073 21.63074 21.63075 21.63076 [25] 21.63078 21.63079 21.63080 21.63081 21.63082 21.63083 21.63084 21.63086 [33] 21.63087 21.63088 21.63089 21.63090 21.63091 21.63093 21.63094 21.63095 [41] 21.63096 21.63097 21.63098 21.63100 21.63101 21.63102 21.63103 21.63104 [49] 21.63105 21.63106 21.63108 21.63109 21.63110 21.63111 21.63112 21.63113 [57] 21.63115 21.63116 21.63117 21.63118 21.63119 21.63120 21.63122 21.63123 [65] 21.63124 21.63125 21.63126 21.63127 21.63128 21.63130 21.63131 21.63132 [73] 21.63133 21.63134 21.63135 21.63137 21.63138 21.63139 21.63140 21.63141 [81] 21.63142 21.63144 21.63145 21.63146 21.63147 21.63148 21.63149 21.63150 [89] 21.63152 21.63153 21.63154 21.63155 21.63156 21.63157 21.63159 21.63160 [97] 21.63161 21.63162 21.63163 21.63164 21.63166 21.63167 21.63168 21.63169 [105] 21.63170 21.63171 21.63172 21.63174 21.63175 21.63176 21.63177 21.63178 [113] 21.63179 21.63181 21.63182 21.63183 21.63184 21.63185 21.63186 21.63188 [121] 21.63189 21.63190 21.63191 21.63192 21.63193 21.63194 21.63196 21.63197 [129] 21.63198 21.63199 21.63200 21.63201 21.63203 21.63204 21.63205 21.63206 [137] 21.63207 21.63208 21.63209 21.63211 21.63212 21.63213 21.63214 21.63215 [145] 21.63216 21.63218 21.63219 21.63220 21.63221 21.63222 21.63223 21.63225 [153] 21.63226 21.63227 21.63228 21.63229 21.63230 21.63231 21.63233 21.63234 [161] 21.63235 21.63236 21.63237 21.63238 21.63240 21.63241 21.63242 21.63243 [169] 21.63244 21.63245 21.63247 21.63248 21.63249 21.63250 21.63251 21.63252 [177] 21.63253 21.63255 21.63256 21.63257 21.63258 21.63259 21.63260 21.63262 [185] 21.63263 21.63264 21.63265 21.63266 21.63267 21.63269 21.63270 21.63271 [193] 21.63272 21.63273 21.63274 21.63275 21.63277 21.63278 21.63279 21.63280 [201] 21.63281 21.63282 21.63284 21.63285 21.63286 21.63287 21.63288 21.63289 [209] 21.63291 21.63292 21.63293 21.63294 21.63295 21.63296 21.63297 21.63299 [217] 21.63300 21.63301 21.63302 21.63303 21.63304 21.63306 21.63307 21.63308 [225] 21.63309 21.63310 21.63311 21.63312 21.63314 21.63315 21.63316 21.63317 [233] 21.63318 21.63319 21.63321 21.63322 21.63323 21.63324 21.63325 21.63326 [241] 21.63328 21.63329 21.63330 21.63331 21.63332 21.63333 21.63334 21.63336 [249] 21.63337 21.63338 21.63339 21.63340 21.63341 21.63343 21.63344 21.63345 [257] 21.63346 21.63347 21.63348 21.63350 21.63351 21.63352 21.63353 21.63354 [265] 21.63355 21.63356 21.63358 21.63359 21.63360 21.63361 21.63362 21.63363 [273] 21.63365 21.63366 21.63367 21.63368 21.63369 21.63370 21.63372 21.63373 [281] 21.63374 21.63375 21.63376 21.63377 21.63378 21.63380 21.63381 21.63382 [289] 21.63383 21.63384 21.63385 21.63387 21.63388 21.63389 21.63390 21.63391 [297] 21.63392 21.63394 21.63395 21.63396 21.63397 21.63398 21.63399 21.63400 [305] 21.63402 21.63403 21.63404 21.63405 21.63406 21.63407 21.63409 21.63410 [313] 21.63411 21.63412 21.63413 21.63414 21.63416 21.63417 21.63418 21.63419 [321] 21.63420 21.63421 21.63422 21.63424 21.63425 21.63426 21.63427 21.63428 [329] 21.63429 21.63431 21.63432 21.63433 21.63434 21.63435 21.63436 21.63437 [337] 21.63439 21.63440 21.63441 21.63442 21.63443 21.63444 21.63446 21.63447 [345] 21.63448 21.63449 21.63450 21.63451 21.63453 21.63454 21.63455 21.63456 [353] 21.63457 21.63458 21.63459 21.63461 21.63462 21.63463 21.63464 21.63465 [361] 21.63466 21.63468 21.63469 21.63470 21.63471 21.63472 21.63473 21.63475 [369] 21.63476 21.63477 21.63478 21.63479 21.63480 21.63481 21.63483 21.63484 [377] 21.63485 21.63486 21.63487 21.63488 21.63490 21.63491 21.63492 21.63493 [385] 21.63494 21.63495 21.63497 21.63498 21.63499 21.63500 21.63501 21.63502 [393] 21.63503 21.63505 21.63506 21.63507 21.63508 21.63509 21.63510 21.63512 [401] 21.63513 21.63514 21.63515 21.63516 21.63517 21.63519 21.63520 21.63521 [409] 21.63522 21.63523 21.63524 21.63525 21.63527 21.63528 21.63529 21.63530 [417] 21.63531 21.63532 21.63534 21.63535 21.63536 21.63537 21.63538 21.63539 [425] 21.63541 21.63542 21.63543 21.63544 21.63545 21.63546 21.63547 21.63549 [433] 21.63550 21.63551 21.63552 21.63553 21.63554 21.63556 21.63557 21.63558 [441] 21.63559 21.63560 21.63561 21.63563 21.63564 21.63565 21.63566 21.63567 [449] 21.63568 21.63569 21.63571 21.63572 21.63573 21.63574 21.63575 21.63576 [457] 21.63578 21.63579 21.63580 21.63581 21.63582 21.63583 21.63584 21.63586 [465] 21.63587 21.63588 21.63589 21.63590 21.63591 21.63593 21.63594 21.63595 [473] 21.63596 21.63597 21.63598 21.63600 21.63601 21.63602 21.63603 21.63604 [481] 21.63605 21.63606 21.63608 21.63609 21.63610 21.63611 21.63612 21.63613 [489] 21.63615 21.63616 21.63617 21.63618 21.63619 21.63620 21.63622 21.63623 [497] 21.63624 21.63625 21.63626 21.63627 21.63628 21.63630 21.63631 21.63632 [505] 21.63633 21.63634 21.63635 21.63637 21.63638 21.63639 21.63640 21.63641 [513] 21.63642 21.63644 21.63645 21.63646 21.63647 21.63648 21.63649 21.63650 [521] 21.63652 21.63653 21.63654 21.63655 21.63656 21.63657 21.63659 21.63660 [529] 21.63661 21.63662 21.63663 21.63664 21.63666 21.63667 21.63668 21.63669 [537] 21.63670 21.63671 21.63672 21.63674 21.63675 21.63676 21.63677 21.63678 [545] 21.63679 21.63681 21.63682 21.63683 21.63684 21.63685 21.63686 21.63687 [553] 21.63689 21.63690 21.63691 21.63692 21.63693 21.63694 21.63696 21.63697 [561] 21.63698 21.63699 21.63700 21.63701 21.63703 21.63704 21.63705 21.63706 [569] 21.63707 21.63708 21.63709 21.63711 21.63712 21.63713 21.63714 21.63715 [577] 21.63716 21.63718 21.63719 21.63720 21.63721 21.63722 21.63723 21.63725 [585] 21.63726 21.63727 21.63728 21.63729 21.63730 21.63731 21.63733 21.63734 [593] 21.63735 21.63736 21.63737 21.63738 21.63740 21.63741 21.63742 21.63743 [601] 21.63744 21.63745 21.63747 21.63748 21.63749 21.63750 21.63751 21.63752 [609] 21.63753 21.63755 21.63756 21.63757 21.63758 21.63759 21.63760 21.63762 [617] 21.63763 21.63764 21.63765 21.63766 21.63767 21.63769 21.63770 21.63771 [625] 21.63772 21.63773 21.63774 21.63775 21.63777 21.63778 21.63779 21.63780 [633] 21.63781 21.63782 21.63784 21.63785 21.63786 21.63787 21.63788 21.63789 [641] 21.63791 21.63792 21.63793 21.63794 21.63795 21.63796 21.63797 21.63799 [649] 21.63800 21.63801 21.63802 21.63803 21.63804 21.63806 21.63807 21.63808 [657] 21.63809 21.63810 21.63811 21.63812 21.63814 21.63815 21.63816 21.63817 [665] 21.63818 21.63819 21.63821 21.63822 21.63823 21.63824 21.63825 21.63826 [673] 21.63828 21.63829 21.63830 21.63831 21.63832 21.63833 21.63834 21.63836 [681] 21.63837 21.63838 21.63839 21.63840 21.63841 21.63843 21.63844 21.63845 [689] 21.63846 21.63847 21.63848 21.63850 21.63851 21.63852 21.63853 21.63854 [697] 21.63855 21.63856 21.63858 21.63859 21.63860 21.63861 21.63862 21.63863 [705] 21.63865 21.63866 21.63867 21.63868 21.63869 21.63870 21.63872 21.63873 [713] 21.63874 21.63875 21.63876 21.63877 21.63878 21.63880 21.63881 21.63882 [721] 21.63883 21.63884 21.63885 21.63887 21.63888 21.63889 21.63890 21.63891 [729] 21.63892 21.63894 21.63895 21.63896 21.63897 21.63898 21.63899 21.63900 [737] 21.63902 21.63903 21.63904 21.63905 21.63906 21.63907 21.63909 21.63910 [745] 21.63911 21.63912 21.63913 21.63914 21.63916 21.63917 21.63918 21.63919 [753] 21.63920 21.63921 21.63922 21.63924 21.63925 21.63926 21.63927 21.63928 [761] 21.63929 21.63931 21.63932 21.63933 21.63934 21.63935 21.63936 21.63938 [769] 21.63939 21.63940 21.63941 21.63942 21.63943 21.63944 21.63946 21.63947 [777] 21.63948 21.63949 21.63950 21.63951 21.63953 21.63954 21.63955 21.63956 [785] 21.63957 21.63958 21.63959 21.63961 21.63962 21.63963 21.63964 21.63965 [793] 21.63966 21.63968 21.63969 21.63970 21.63971 21.63972 21.63973 21.63975 [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Not reporting 55 O2 values from manual exclude period 21.872701 to 21.87415" [1] "Not reporting 55 APO values from manual exclude period 21.872701 to 21.87415" [1] "Not reporting 36 O2 values from manual exclude period 21.875074 to 21.876024" [1] "Not reporting 36 APO values from manual exclude period 21.875074 to 21.876024" [1] "Not reporting 27 O2 values from manual exclude period 21.87721 to 21.877922" [1] "Not reporting 27 APO values from manual exclude period 21.87721 to 21.877922" [1] "Not reporting 58 O2 values from manual exclude period 21.942007 to 21.9435" [1] "Not reporting 58 APO values from manual exclude period 21.942007 to 21.9435" [1] "Not reporting 127 smoothed O2 values from manual exclude period 21.8720699954196 to 21.8735325732917" [1] "Not reporting 127 smoothed APO values from manual exclude period 21.8720699954196 to 21.8735325732917" [1] "Not reporting 83 smoothed O2 values from manual exclude period 21.8744514779235 to 21.8754119467465" [1] "Not reporting 83 smoothed APO values from manual exclude period 21.8744514779235 to 21.8754119467465" [1] "Not reporting 63 smoothed O2 values from manual exclude period 21.8765930693306 to 21.8773153548759" [1] "Not reporting 63 smoothed APO values from manual exclude period 21.8765930693306 to 21.8773153548759" [1] "Not reporting 129 smoothed O2 values from manual exclude period 21.941386563799 to 21.9428795618075" [1] "Not reporting 129 smoothed APO values from manual exclude period 21.941386563799 to 21.9428795618075" [1] "Not reporting 127 smoothed O2 values from manual exclude period 21.8720699954196 to 21.8735325732917" [1] "Not reporting 127 smoothed APO values from manual exclude period 21.8720699954196 to 21.8735325732917" [1] "Not reporting 83 smoothed O2 values from manual exclude period 21.8744514779235 to 21.8754119467465" [1] "Not reporting 83 smoothed APO values from manual exclude period 21.8744514779235 to 21.8754119467465" [1] "Not reporting 63 smoothed O2 values from manual exclude period 21.8765930693306 to 21.8773153548759" [1] "Not reporting 63 smoothed APO values from manual exclude period 21.8765930693306 to 21.8773153548759" [1] "Not reporting 129 smoothed O2 values from manual exclude period 21.941386563799 to 21.9428795618075" [1] "Not reporting 129 smoothed APO values from manual exclude period 21.941386563799 to 21.9428795618075" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item Read 29521 records [1] 3 2949 29521 [1] "done reading AO2" [1] 2016 2016 2016 2016 2016 2016 [1] 5 5 5 5 5 5 [1] 69158 69164 69174 69184 69194 69204 [1] "2016-01-05 19:12:38 UTC" "2016-01-05 19:12:44 UTC" [3] "2016-01-05 19:12:54 UTC" "2016-01-05 19:13:04 UTC" [5] "2016-01-05 19:13:14 UTC" "2016-01-05 19:13:24 UTC" [1] -301.49 -307.23 -306.56 -310.03 -312.49 -304.86 [1] 28640 [1] "Average Date / Time for slice RF03 = 2016-01-21 19:10:37.4056687355042" [1] "sum(lsel) = 2258" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 8.24845 821.82938 [1] 8.24845 821.82938 [1] 178.1706 991.7515 [1] 3.651634e-02 9.999990e+05 [1] "no level flight between 275 and 375 hPa" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ORCAS RF03 APO_AO2 range = -341.03,-253.81" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 29521 records [1] 3 2949 29521 [1] "done reading AO2" [1] 2016 2016 2016 2016 2016 2016 [1] 5 5 5 5 5 5 [1] 69158 69164 69174 69184 69194 69204 [1] "2016-01-05 19:12:38 UTC" "2016-01-05 19:12:44 UTC" [3] "2016-01-05 19:12:54 UTC" "2016-01-05 19:13:04 UTC" [5] "2016-01-05 19:13:14 UTC" "2016-01-05 19:13:24 UTC" [1] -616.74 -615.88 -612.65 -613.33 -605.02 -591.01 [1] 28648 [1] "Average Date / Time for slice RF03 = 2016-01-21 19:10:37.4056687355042" [1] "sum(lsel) = 2258" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 8.24845 821.82938 [1] 8.24845 821.82938 [1] 178.1706 991.7515 [1] 3.651634e-02 9.999990e+05 [1] "no level flight between 275 and 375 hPa" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ORCAS RF03 O2_AO2 range = -600.94,-507.89" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 29521 records [1] 3 2949 29521 [1] "done reading AO2" [1] 2016 2016 2016 2016 2016 2016 [1] 5 5 5 5 5 5 [1] 69158 69164 69174 69184 69194 69204 [1] "2016-01-05 19:12:38 UTC" "2016-01-05 19:12:44 UTC" [3] "2016-01-05 19:12:54 UTC" "2016-01-05 19:13:04 UTC" [5] "2016-01-05 19:13:14 UTC" "2016-01-05 19:13:24 UTC" [1] 410.011 408.755 408.268 407.738 405.688 404.472 [1] 32775 [1] "Average Date / Time for slice RF03 = 2016-01-21 19:12:52.6741766929626" [1] "sum(lsel) = 2308" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 8.24845 821.82938 [1] 8.24845 821.82938 [1] 178.1706 991.7515 [1] 3.651634e-02 9.999990e+05 [1] "no level flight between 275 and 375 hPa" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ORCAS RF03 CO2_AO2 range = 394.9,401.11" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 460 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 460 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 460 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 460 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 460 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 460 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 460 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"