[1] "2025-05-13 14:05:44 MDT" options [1,] "file" "160118a" [2,] "flight" "RF02" [3,] "project" "ORCAS" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "1000" [7,] "spspco" "1000" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "11" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "aft" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "full" [48,] "o2caltype" "full" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "FALSE" [64,] "icartt" "0" [65,] "icarttrev" "0" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "160118a" [1] "Reading in flight and plotting intervals" Read 13 records [1] "Reading in /scr/raf/stephens/AO2DAT/160118a.mr" Read 11922 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.42 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.46 seconds" [1] "New JOGEST = 2.46 seconds" [1] "New VALVE SKIP = 24 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/160118a.hr" Read 47689 records [1] "HR FILE MATCHES" [1] "Converting hrdata statout" [1] "Tue May 13 02:05:44 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30771 description: HS CO2 = 391.3 O2 = -453.1" [1] "position 2 cylinder OK30764 description: LS CO2 = 404.02 O2 = -715.6" [1] "position 3 cylinder OK30772 description: LT CO2 = 392.41 O2 = -582.3" [1] "position 4 cylinder OK30762 description: WT CO2 = 410.62 O2 = -688.7" [1] "position 5 cylinder OK30761 description: LP CO2 = 369.44 O2 = -819.2" [1] 391.3016 404.0205 392.4100 410.6170 369.4395 [1] -453.1081 -715.5835 -582.3427 -688.7000 -819.1813 [1] "Nominal linear calibrations:" [1] "co2scl = 1.115 co2off = -30.28 o2scla = -0.044 o2offa = -173.9" [1] "(dV/V)/(dXO2/XO2) = -4.781" [1] "(dV/V)/d(O2/N2) = -3.78" [1] "Reading in very high resolution timeseries" Read 238440 records [1] 238440 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 02:05:45 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 02:05:46 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.78" [1] "o2scaleavenew_drelVdrelP = -4.781" [1] "median(o2scalenew) = -3.798" [1] "Empirical dV/V vs dP/P relationship =-2.71, r^2 =0.002, damping =0.567" [1] "Tue May 13 02:05:46 PM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "Plotting Jog Shapes" [1] "Tue May 13 02:06:18 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "RECALC TIME MATCHES" [1] "Tue May 13 02:06:18 PM MDT 2025 done recreating mr o2diffs" [1] "Removed 2 medium-rate record(s) with accumulation errors" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 5380.23 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 5414.521 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 5414.455 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -14.734 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 9 [1] 26 [1] 34 [1] 34 [1] 37 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 531 18.59780 -2198.0192 1193510.3 -1 [2,] 532 18.59782 -1785.3213 1196121.1 1 [3,] 533 18.59785 -1337.4891 1194553.0 -1 [4,] 753 18.60400 -952.2900 1186426.9 -1 [5,] 754 18.60403 -1359.5074 1187606.9 1 [6,] 755 18.60406 -1839.7132 1185422.3 -1 [7,] 1195 18.61650 -1316.3317 1161729.4 -1 [8,] 1196 18.61653 -1733.8176 1163235.9 1 [9,] 1197 18.61656 -2120.3973 1160719.0 -1 [10,] 2076 18.64149 -1598.4156 1109730.9 1 [11,] 2077 18.64152 -1593.0453 1108490.1 -1 [12,] 2078 18.64155 -1629.5319 1110767.0 1 [13,] 2343 18.64904 -1630.1076 1096910.0 -1 [14,] 3467 18.68072 -1690.6067 1051449.6 -1 [15,] 3468 18.68075 -1685.1225 1052747.0 1 [16,] 3469 18.68077 -1690.2317 1050431.1 -1 [17,] 3470 18.68080 -1684.1179 1051746.8 1 [18,] 3577 18.68377 -1592.0224 1045821.4 -1 [19,] 6311 18.76164 -1822.0569 994246.3 -1 [20,] 7233 18.78829 -1727.0558 971656.3 -1 [21,] 7309 18.79049 -1098.7572 970031.6 -1 [22,] 7310 18.79052 -1504.0921 970951.8 1 [23,] 7311 18.79054 -1937.6698 968940.5 -1 [24,] 8437 18.82302 -1833.4635 947929.6 -1 [25,] 8764 18.83256 -1713.6530 943104.1 -1 [26,] 9988 18.86729 -1540.4784 926710.3 -1 [27,] 11248 18.90309 -1794.7333 903279.4 -1 [28,] 11911 18.92166 520.9854 899798.2 1 [29,] 11912 18.92169 -1203.5242 898697.5 -1 [30,] 11913 18.92171 -6949.6684 899756.4 1 [31,] 11914 18.92174 -1185.9386 898699.7 -1 [32,] 11915 18.92177 31820.5541 899763.7 1 [33,] 11916 18.92180 80213.9037 983296.5 -1 [34,] 11917 18.92183 157865.7785 899851.8 1 [35,] 11918 18.92186 188266.4247 1112474.6 -1 [36,] 11919 18.92188 298745.2210 901273.9 1 [37,] 11920 18.92192 256632.3074 1219254.9 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 2996 18.66754 2.90202e+02 [2,] 3796 18.68985 9.56250e+24 [3,] 11916 18.92180 3.89116e+02 [4,] 11917 18.92183 3.77847e+02 [5,] 11918 18.92186 3.61177e+02 [6,] 11919 18.92188 3.48693e+02 [7,] 11920 18.92192 3.37906e+02 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 219.414 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 91.918 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) -83.989 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -14.734 PER MEG" [1] "Screened 6 O2 and CO2 values when pdsp not controlling" [1] 391.3016 404.0205 392.4100 410.6170 369.4395 [1] -453.1081 -715.5835 -582.3427 -688.7000 -819.1813 [1] "Nominal linear calibrations:" [1] "co2scl = 1.115 co2off = -30.28 o2scla = -0.044 o2offa = -173.8" [1] "(dV/V)/(dXO2/XO2) = -4.79" [1] "(dV/V)/d(O2/N2) = -3.787" [1] "Finding cal and sample periods" [1] "Median Cal: 2.95 minutes" [1] "Average Cal: 2.88 minutes" [1] "Shortest Cal: 0.23 minutes" [1] "Longest Cal: 5 minutes" [1] "Removed 3 calibration period(s) with less than 30 seconds of data" [1] "at: 14" [1] "at: 30" [1] "at: 42" [1] "Reading in aircraft data" [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.00599" [1] "HS CO2 vs. PACAB: m = -0.00757, r^2 = 0.37" [1] "LS CO2 vs. PACAB: m = -0.00441, r^2 = 0.12" [1] "HS+LS LIH2O vs. PACAB: m = -0.000149" [1] "HS LIH2O vs. PACAB: m = -0.00016, r^2 = 0.78" [1] "LS LIH2O vs. PACAB: m = -0.000138, r^2 = 0.7" [1] "HS+LS CO2 vs. LIH2O: m = 63.5" [1] "HS CO2 vs. LIH2O: m = 68.5, r^2 = 0.91" [1] "LS CO2 vs. LIH2O: m = 58.5, r^2 = 0.53" [1] "APCO2 vs. PACAB: m = 0.098, r^2 = 0.64" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 0.00247" [1] "HS O2 vs. PACAB: m = 0.037, r^2 = 0.01" [1] "LS O2 vs. PACAB: m = -0.0321, r^2 = 0.01" [1] "HS+LS O2 vs. LIH2O: m = 435" [1] "HS O2 vs. LIH2O: m = 140, r^2 = 0.01" [1] "LS O2 vs. LIH2O: m = 729, r^2 = 0.07" [1] "HS+LS O2 vs. PAO2: m = -15.6" [1] "HS O2 vs. PAO2: m = -15.6, r^2 = 0.23" [1] "LS O2 vs. PAO2: m = -15.7, r^2 = 0.14" [1] "HS+LS O2 vs. TPBOX: m = 6.61" [1] "HS O2 vs. TPBOX: m = 5.48, r^2 = 0.15" [1] "LS O2 vs. TPBOX: m = 7.75, r^2 = 0.17" [1] "APO vs. PACAB: m = -2.17, r^2 = 0.64" [1] "APO vs. PAO2: m = -89.8, r^2 = 0.25" [1] "APO vs. TPBOX: m = 16.9, r^2 = 0.02" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 6.2, r^2 = 0.49" [1] "LS CO2 vs. LiCor Cell P: m = 5.91, r^2 = 0.36" [1] "HS CO2 vs. CO2 Vol P: m = 0.948, r^2 = 0.61" [1] "LS CO2 vs. CO2 Vol P: m = 0.723, r^2 = 0.42" [1] "HS CO2 vs. SLOPE: m = 0.453, r^2 = 0.02" [1] "LS CO2 vs. SLOPE: m = -0.86, r^2 = 0.14" [1] "HS O2 vs. O2 Vol P: m = -7.38, r^2 = 0.03" [1] "LS O2 vs. O2 Vol P: m = -6.72, r^2 = 0.02" [1] "HS O2 vs. O2 Cell T: m = -1.93, r^2 = 0.01" [1] "LS O2 vs. O2 Cell T: m = 2.2, r^2 = 0.01" [1] "HS O2 vs. CO2 Vol P: m = -17.1, r^2 = 0.26" [1] "LS O2 vs. CO2 Vol P: m = -11.4, r^2 = 0.08" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = 23.6, r^2 = 0.25" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = 18.9, r^2 = 0.1" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -17.1, r^2 = 0.26" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -11.4, r^2 = 0.08" [1] "HS O2 vs. LIH2O: m = 416, r^2 = 0.03" [1] "LS O2 vs. LIH2O: m = 865, r^2 = 0.1" [1] "HS O2 vs. SLOPE: m = -0.0185, r^2 = 0" [1] "LS O2 vs. SLOPE: m = -0.217, r^2 = 0.01" [1] "HS CO2 vs. Time: m = 36.941, r^2 = 0.9" [1] "LS CO2 vs. Time: m = 37.394, r^2 = 0.91" [1] "HS CO2 vs. Cylinder T: m = 1.606, r^2 = 0.12" [1] "LS CO2 vs. Cylinder T: m = 0.515, r^2 = 0.014" [1] "HS CO2 vs. Regulator T: m = -0.244, r^2 = 0.06" [1] "LS CO2 vs. Regulator T: m = -0.335, r^2 = 0.181" [1] "HS CO2 vs. Ref. Volumes T: m = 0.731, r^2 = 0.39" [1] "LS CO2 vs. Ref. Volumes T: m = 0.672, r^2 = 0.254" [1] "HS CO2 vs. Manifold T: m = 0.07, r^2 = 0.01" [1] "LS CO2 vs. Manifold T: m = -0.029, r^2 = 0.003" [1] "HS CO2 vs. Pump Box T: m = 0.055, r^2 = 0.01" [1] "LS CO2 vs. Pump Box T: m = -0.023, r^2 = 0.002" [1] "HS O2 vs. Cylinder T: m = -18.753, r^2 = 0.02" [1] "LS O2 vs. Cylinder T: m = -4.999, r^2 = 0.001" [1] "HS O2 vs. Regulator T: m = -2.786, r^2 = 0.01" [1] "LS O2 vs. Regulator T: m = 2.398, r^2 = 0.007" [1] "HS O2 vs. Ref. Volumes T: m = -13.517, r^2 = 0.17" [1] "LS O2 vs. Ref. Volumes T: m = -7.732, r^2 = 0.026" [1] "HS O2 vs. Manifold T: m = 1.687, r^2 = 0.01" [1] "LS O2 vs. Manifold T: m = 4.606, r^2 = 0.057" [1] "HS O2 vs. Pump Box T: m = 2.089, r^2 = 0.01" [1] "LS O2 vs. Pump Box T: m = 4.503, r^2 = 0.049" [1] "HS CO2 vs. WT P: m = -0.009, r^2 = 0.32" [1] "LS CO2 vs. WT P: m = -0.003, r^2 = 0.06" [1] "HS CO2 vs. SP P: m = -0.00925, r^2 = 0.59" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.088, r^2 = 0.37" [1] "HS CO2 vs. SP P comb with PACAB: m = -0.099, r^2 = 0.37" [1] "LS CO2 vs. SP P: m = -0.0032, r^2 = 0.08" [1] "LS CO2 vs. PACAB comb with SP P: m = 0.037, r^2 = 0.07" [1] "LS CO2 vs. SP P comb with PACAB: m = -0.04, r^2 = 0.07" [1] "HS CO2 vs. WT FL: m = 0.065, r^2 = 0.01" [1] "LS CO2 vs. WT FL: m = -0.041, r^2 = 0.005" [1] "HS CO2 vs. SP FL: m = 0.307, r^2 = 0.49" [1] "LS CO2 vs. SP FL: m = 0.106, r^2 = 0.089" [1] "HS O2 vs. SLPDIFF: m = 0.18, r^2 = 0.01" [1] "LS O2 vs. SLPDIFF: m = 0.121, r^2 = 0.003" [1] "HS O2 vs. WT P: m = -0.018, r^2 = 0" [1] "LS O2 vs. WT P: m = -0.06, r^2 = 0.018" [1] "HS O2 vs. SP P: m = -0.009, r^2 = 0" [1] "LS O2 vs. SP P: m = -0.06, r^2 = 0.017" [1] "HS O2 vs. WT FL: m = -3.948, r^2 = 0.06" [1] "LS O2 vs. WT FL: m = -3.378, r^2 = 0.023" [1] "HS O2 vs. SP FL: m = -1.598, r^2 = 0.02" [1] "LS O2 vs. SP FL: m = 0.73, r^2 = 0.003" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): -19.39, 57.14" [1] "Empirical LP O2 lag flow(s): 103, 104.4" [1] "Empirical LP CO2 lag time(s): -19.39, 49.88" [1] "Empirical LP CO2 lag flow(s): 103, 104.4" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.86" [1] "Median all HS CO2 SD = 0.86" [1] "Median all LS CO2 SD = 0.87" [1] "Median all LT CO2 SD = 0.86" [1] "Median all WT CO2 SD = 0.89" [1] "Median all HS or LS CO2 SD = 0.87" [1] "Median all cal O2 SD = 4.05" [1] "Median all HS O2 SD = 2.6" [1] "Median all LS O2 SD = 3.91" [1] "Median all LT O2 SD = 4.09" [1] "Median all WT O2 SD = 3.24" [1] "Median all HS or LS O2 SD = 2.96" [1] "Median all cal CO2 Slope = 0.01" [1] "Median all HS CO2 Slope = -0.03" [1] "Median all LS CO2 Slope = -0.07" [1] "Median all LT CO2 Slope = 0.08" [1] "Median all WT CO2 Slope = 0.01" [1] "Median all HS or LS CO2 Slope = -0.04" [1] "Median all cal O2 Slope = 1.86" [1] "Median all HS O2 Slope = 1.29" [1] "Median all LS O2 Slope = 2.4" [1] "Median all LT O2 Slope = 5.46" [1] "Median all WT O2 Slope = 1.26" [1] "Median all HS or LS O2 Slope = 1.87" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 5.27 per meg" [1] "Initial O2 Calibration Offset = 0.54 per meg" [1] "SD of O2 Calibration (post-takeoff) = 2.48 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = 0.68 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = 9.26 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using ORCAS inlet volumes" [1] "before any lag: 50366.02 79653.63" [1] "Time lag adjustments = 11 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 58.7 at 104.7 sccm" [1] "Median O2 delay + tlagff = 59.4 at 104.7 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 53.7 at 104.7 sccm" [1] "Median O2 delay from 3-way + tlagff = 54.4 at 104.7 sccm" [1] "after calc and ff lag: 50299.09 79597.21" [1] "2025-05-13 14:06:51 MDT" [1] "Calculating 1-sec interpolated values" [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Not reporting 989 O2 values from manual exclude period 18.858499 to 18.886551" [1] "Not reporting 989 APO values from manual exclude period 18.858499 to 18.886551" [1] "Not reporting 2425 smoothed O2 values from manual exclude period 18.8578573951496 to 18.885922693758" [1] "Not reporting 2425 smoothed APO values from manual exclude period 18.8578573951496 to 18.885922693758" [1] "Not reporting 2425 smoothed O2 values from manual exclude period 18.8578573951496 to 18.885922693758" [1] "Not reporting 2425 smoothed APO values from manual exclude period 18.8578573951496 to 18.885922693758" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item Read 24601 records [1] 2 2452 24601 [1] "done reading AO2" [1] 2016 2016 2016 2016 2016 2016 [1] 5 5 5 5 5 5 [1] 69158 69164 69174 69184 69194 69204 [1] "2016-01-05 19:12:38 UTC" "2016-01-05 19:12:44 UTC" [3] "2016-01-05 19:12:54 UTC" "2016-01-05 19:13:04 UTC" [5] "2016-01-05 19:13:14 UTC" "2016-01-05 19:13:24 UTC" [1] -301.49 -307.23 -306.56 -310.03 -312.49 -304.86 [1] 28624 [1] "Average Date / Time for slice RF02 = 2016-01-18 17:52:59.3900709152222" [1] "sum(lsel) = 1833" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 16.07748 821.91810 [1] 16.07748 821.91810 [1] 178.0819 983.9225 [1] 3.348171e-03 9.999990e+05 [1] "no level flight between 275 and 375 hPa" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ORCAS RF02 APO_AO2 range = -334.67,-272.52" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 24601 records [1] 2 2452 24601 [1] "done reading AO2" [1] 2016 2016 2016 2016 2016 2016 [1] 5 5 5 5 5 5 [1] 69158 69164 69174 69184 69194 69204 [1] "2016-01-05 19:12:38 UTC" "2016-01-05 19:12:44 UTC" [3] "2016-01-05 19:12:54 UTC" "2016-01-05 19:13:04 UTC" [5] "2016-01-05 19:13:14 UTC" "2016-01-05 19:13:24 UTC" [1] -616.74 -615.88 -612.65 -613.33 -605.02 -591.01 [1] 28633 [1] "Average Date / Time for slice RF02 = 2016-01-18 17:53:03.06761169433594" [1] "sum(lsel) = 1834" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 16.07748 821.91810 [1] 16.07748 821.91810 [1] 178.0819 983.9225 [1] 3.348171e-03 9.999990e+05 [1] "no level flight between 275 and 375 hPa" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ORCAS RF02 O2_AO2 range = -601.49,-526.85" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 24601 records [1] 2 2452 24601 [1] "done reading AO2" [1] 2016 2016 2016 2016 2016 2016 [1] 5 5 5 5 5 5 [1] 69158 69164 69174 69184 69194 69204 [1] "2016-01-05 19:12:38 UTC" "2016-01-05 19:12:44 UTC" [3] "2016-01-05 19:12:54 UTC" "2016-01-05 19:13:04 UTC" [5] "2016-01-05 19:13:14 UTC" "2016-01-05 19:13:24 UTC" [1] 410.011 408.755 408.268 407.738 405.688 404.472 [1] 32775 [1] "Average Date / Time for slice RF02 = 2016-01-18 18:10:47.2514734268188" [1] "sum(lsel) = 2036" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 16.07748 821.91810 [1] 16.07748 821.91810 [1] 178.0819 983.9225 [1] 3.348171e-03 9.999990e+05 [1] "highestmid = 698.270584" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ORCAS RF02 CO2_AO2 range = 396.03,401.38" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 10 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 10 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 10 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 10 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 10 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 10 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 10 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 10 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 10 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"