[1] "2025-05-13 14:03:35 MDT" options [1,] "file" "160115a" [2,] "flight" "RF01" [3,] "project" "ORCAS" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "1000" [7,] "spspco" "1000" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "11" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "aft" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "full" [48,] "o2caltype" "full" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "FALSE" [64,] "icartt" "0" [65,] "icarttrev" "0" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "160115a" [1] "Reading in flight and plotting intervals" Read 13 records [1] "Reading in /scr/raf/stephens/AO2DAT/160115a.mr" Read 13660 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.33 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.39 seconds" [1] "New JOGEST = 2.39 seconds" [1] "New VALVE SKIP = 25 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/160115a.hr" Read 54643 records [1] "HR FILE LENGTH NOT NSWITCH * MRDATA FILE LENGTH" [1] 13660 54641 [1] "HR FILE LENGTH NOT MULTIPLE OF NSWITCH" [1] 13660 54641 [1] "Converting hrdata statout" [1] "Tue May 13 02:03:36 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30771 description: HS CO2 = 391.3 O2 = -453.3" [1] "position 2 cylinder OK30764 description: LS CO2 = 404.02 O2 = -715.7" [1] "position 3 cylinder OK30772 description: LT CO2 = 392.41 O2 = -582.5" [1] "position 4 cylinder OK30762 description: WT CO2 = 410.62 O2 = -688.7" [1] "position 5 cylinder OK30761 description: LP CO2 = 369.44 O2 = -819" [1] 391.3012 404.0194 392.4100 410.6170 369.4377 [1] -453.3197 -715.7430 -582.5194 -688.7000 -819.0338 [1] "Nominal linear calibrations:" [1] "co2scl = 1.073 co2off = -16.5 o2scla = -0.044 o2offa = -172.7" [1] "(dV/V)/(dXO2/XO2) = -4.766" [1] "(dV/V)/d(O2/N2) = -3.768" [1] "Reading in very high resolution timeseries" Read 273200 records [1] 273200 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 02:03:36 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 02:03:38 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.768" [1] "o2scaleavenew_drelVdrelP = -4.766" [1] "median(o2scalenew) = -3.774" [1] "Empirical dV/V vs dP/P relationship =-2.5, r^2 =0.009, damping =0.524" [1] "Tue May 13 02:03:38 PM MDT 2025 done redoing corrections" [1] "NON-INTEGER NGAS IN JOGAVES AT:" [1] 1427 12900 $icochar [1] "0" "0.1" "20:31:15" "12:57:15" "15.52" "15.63" [7] "15.681" "15.71" "15.74" "15.774" "15.82" "15.597894" [13] "15.812882" $ecochar [1] "367" "12:57:15" "367" "20:31:15" "15.57" "15.681" [7] "15.71" "15.74" "15.774" "15.82" "15.85" "15.599526" [13] "15.816471" $flag [1] "all" "LP" "LP" "flight" [5] "a" "b" "c" "d" [9] "e" "f" "g" "donotreporto2" [13] "donotreporto2" $ico2 [1] 0.00000 0.10000 15.85503 15.53976 15.52000 15.63000 15.68100 15.71000 [9] 15.74000 15.77400 15.82000 15.59789 15.81288 $eco2 [1] 367.00000 15.53976 367.00000 15.85503 15.57000 15.68100 15.71000 [8] 15.74000 15.77400 15.82000 15.85000 15.59953 15.81647 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 1426 1426 15.53974 1.836477 -0.00100225 0.0120945 0.0120945 1426 1427 1427 15.53976 1.833559 -0.00112525 0.0119645 0.0119645 1427 1428 1428 15.53979 1.837020 -0.00086540 0.0120247 0.0120247 1428 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 1426 10.5 6.00 16.00 1510.50 1 1.837642 1.837580 1427 10.5 2.25 16.75 386.75 -1 1.834724 1.834654 1428 10.5 1.00 17.00 25.50 1 1.838167 1.838113 vuvsigpdprcorr 1426 1.836830 1427 1.833913 1428 1.837367 [1] 0.5397351 0.5397623 0.5397902 [,1] [,2] [,3] [1,] 0.539747 1 6 [2,] 0.539756 -1 6 [3,] 0.539762 -1 1 [4,] 0.539768 -1 1 [5,] 0.539774 -1 1 [6,] 0.539784 1 1 [7,] 0.539790 1 1 [8,] 0.539796 1 1 [9,] 0.539802 1 1 [10,] 0.539812 -1 1 [11,] 0.539817 -1 1 [12,] 0.539823 -1 1 [13,] 0.539829 -1 1 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 12899 12900 15.85501 1.469613 -0.00090630 0.01454045 0.01454045 12900 12900 12901 15.85504 1.472088 -0.00077830 0.01440455 0.01440455 12901 12901 12902 15.85507 1.469523 -0.00100605 0.01422120 0.01422120 12902 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 12899 10.5 1.00 50.00 12510.50 -1 1.470712 1.470667 12900 10.5 4.75 50.75 3136.75 1 1.473169 1.473130 12901 10.5 6.00 51.00 25.50 -1 1.470608 1.470558 vuvsigpdprcorr 12899 1.469947 12900 1.472415 12901 1.469853 [1] 0.8550132 0.8550403 0.8550678 [,1] [,2] [,3] [1,] 0.855019 -1 1 [2,] 0.855025 -1 1 [3,] 0.855034 1 1 [4,] 0.855040 1 6 [5,] 0.855046 1 6 [6,] 0.855052 1 6 [7,] 0.855062 -1 6 [8,] 0.855068 -1 6 [9,] 0.855073 -1 6 [10,] 0.855079 -1 6 [11,] 0.855089 1 6 [12,] 0.855095 1 6 [13,] 0.855101 1 6 [1] "NON-INTEGER NGASNUM IN JOGAVES AT:" [1] 1427 12900 $icochar [1] "0" "0.1" "20:31:15" "12:57:15" "15.52" "15.63" [7] "15.681" "15.71" "15.74" "15.774" "15.82" "15.597894" [13] "15.812882" $ecochar [1] "367" "12:57:15" "367" "20:31:15" "15.57" "15.681" [7] "15.71" "15.74" "15.774" "15.82" "15.85" "15.599526" [13] "15.816471" $flag [1] "all" "LP" "LP" "flight" [5] "a" "b" "c" "d" [9] "e" "f" "g" "donotreporto2" [13] "donotreporto2" $ico2 [1] 0.00000 0.10000 15.85503 15.53976 15.52000 15.63000 15.68100 15.71000 [9] 15.74000 15.77400 15.82000 15.59789 15.81288 $eco2 [1] 367.00000 15.53976 367.00000 15.85503 15.57000 15.68100 15.71000 [8] 15.74000 15.77400 15.82000 15.85000 15.59953 15.81647 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 1426 1426 15.53974 1.836477 -0.00100225 0.0120945 0.0120945 1426 1427 1427 15.53976 1.833559 -0.00112525 0.0119645 0.0119645 1427 1428 1428 15.53979 1.837020 -0.00086540 0.0120247 0.0120247 1428 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 1426 10.5 6.00 16.00 1510.50 1 1.837642 1.837580 1427 10.5 2.25 16.75 386.75 -1 1.834724 1.834654 1428 10.5 1.00 17.00 25.50 1 1.838167 1.838113 vuvsigpdprcorr 1426 1.836830 1427 1.833913 1428 1.837367 [1] 0.5397351 0.5397623 0.5397902 [,1] [,2] [,3] [1,] 0.539747 1 6 [2,] 0.539756 -1 6 [3,] 0.539762 -1 1 [4,] 0.539768 -1 1 [5,] 0.539774 -1 1 [6,] 0.539784 1 1 [7,] 0.539790 1 1 [8,] 0.539796 1 1 [9,] 0.539802 1 1 [10,] 0.539812 -1 1 [11,] 0.539817 -1 1 [12,] 0.539823 -1 1 [13,] 0.539829 -1 1 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 12899 12900 15.85501 1.469613 -0.00090630 0.01454045 0.01454045 12900 12900 12901 15.85504 1.472088 -0.00077830 0.01440455 0.01440455 12901 12901 12902 15.85507 1.469523 -0.00100605 0.01422120 0.01422120 12902 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 12899 10.5 1.00 50.00 12510.50 -1 1.470712 1.470667 12900 10.5 4.75 50.75 3136.75 1 1.473169 1.473130 12901 10.5 6.00 51.00 25.50 -1 1.470608 1.470558 vuvsigpdprcorr 12899 1.469947 12900 1.472415 12901 1.469853 [1] 0.8550132 0.8550403 0.8550678 [,1] [,2] [,3] [1,] 0.855019 -1 1 [2,] 0.855025 -1 1 [3,] 0.855034 1 1 [4,] 0.855040 1 6 [5,] 0.855046 1 6 [6,] 0.855052 1 6 [7,] 0.855062 -1 6 [8,] 0.855068 -1 6 [9,] 0.855073 -1 6 [10,] 0.855079 -1 6 [11,] 0.855089 1 6 [12,] 0.855095 1 6 [13,] 0.855101 1 6 [1] "JOGAVES DOES NOT MATCH" [1] "MASKING 20 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 02:04:15 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 669597.548832 SECONDS" [1] "Tue May 13 02:04:15 PM MDT 2025 done recreating mr o2diffs" [1] "Removed 2 medium-rate record(s) with accumulation errors" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) -302.247 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) -75.883 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) -82.217 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 20.532 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 28 [1] 48 [1] 58 [1] 58 [1] 58 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 524 15.51462 -2189.790 1177649.4 -1 [2,] 525 15.51465 -1742.958 1180287.2 1 [3,] 526 15.51467 -1254.449 1178876.9 -1 [4,] 1352 15.53769 -1692.829 1146772.4 -1 [5,] 1353 15.53772 -1686.870 1148180.1 1 [6,] 1354 15.53774 -1707.132 1145750.1 -1 [7,] 2366 15.56598 -1522.519 1118613.6 -1 [8,] 3509 15.59790 -1523.597 1086618.8 1 [9,] 3510 15.59793 -1539.464 1085448.1 -1 [10,] 3511 15.59796 -1545.482 1087668.0 1 [11,] 3512 15.59799 -1546.519 1086472.9 -1 [12,] 3523 15.59830 -1603.413 1088553.1 1 [13,] 3524 15.59832 -1581.114 1086310.1 -1 [14,] 3525 15.59835 -1558.246 1087444.0 1 [15,] 3526 15.59838 -1553.348 1085174.9 -1 [16,] 3527 15.59841 -1539.892 1086320.7 1 [17,] 3538 15.59871 -1488.891 1084816.8 -1 [18,] 3539 15.59874 -1503.259 1086923.8 1 [19,] 3540 15.59877 -1524.540 1085874.1 -1 [20,] 3541 15.59880 -1534.741 1088027.2 1 [21,] 3551 15.59907 -1571.632 1089118.8 1 [22,] 3552 15.59910 -1586.289 1086915.7 -1 [23,] 3553 15.59913 -1562.165 1088115.8 1 [24,] 3554 15.59915 -1539.074 1085899.7 -1 [25,] 3555 15.59918 -1533.393 1087014.9 1 [26,] 3556 15.59921 -1552.454 1084778.2 -1 [27,] 3557 15.59923 -1563.155 1085976.4 1 [28,] 3565 15.59945 -1515.776 1085272.8 1 [29,] 3566 15.59949 -1527.291 1084148.8 -1 [30,] 3567 15.59951 -1534.420 1086312.0 1 [31,] 3568 15.59954 -1517.481 1085152.4 -1 [32,] 3569 15.59957 -1512.510 1087319.9 1 [33,] 3570 15.59960 -1564.699 1086178.5 -1 [34,] 3571 15.59962 -1616.682 1088443.9 1 [35,] 3610 15.60069 -1576.883 1081494.8 -1 [36,] 4872 15.63545 -1637.159 1060469.1 -1 [37,] 5858 15.66196 -1690.503 1013526.4 -1 [38,] 5859 15.66198 -1709.628 1014716.5 1 [39,] 5860 15.66201 -1768.409 1012436.8 -1 [40,] 5893 15.66293 -1660.397 1014916.1 1 [41,] 5894 15.66296 -1765.056 1013734.8 -1 [42,] 5895 15.66298 -1875.174 1015969.6 1 [43,] 6156 15.67018 -1732.380 1009616.8 -1 [44,] 6236 15.67238 -1176.289 1007330.8 -1 [45,] 6237 15.67240 -1589.877 1008400.5 1 [46,] 6238 15.67243 -1993.508 1006208.1 -1 [47,] 7414 15.70487 -1630.452 991757.9 -1 [48,] 7494 15.70708 -2099.354 989717.6 -1 [49,] 7495 15.70710 -1729.229 991903.8 1 [50,] 7496 15.70713 -1308.434 990723.7 -1 [51,] 8678 15.73955 -1630.190 976386.4 -1 [52,] 9940 15.77426 -1700.663 957732.9 -1 [53,] 11232 15.80900 -1739.296 943692.5 -1 [54,] 11312 15.81120 -1296.833 943259.6 -1 [55,] 11313 15.81123 -1635.392 944260.7 1 [56,] 11314 15.81125 -2009.776 942178.0 -1 [57,] 12186 15.83526 -1662.627 930187.9 -1 [58,] 12899 15.85507 -1719.591 916606.5 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 9845 15.77165 10090.710 [2,] 9937 15.77418 98059970.000 [3,] 13620 15.87496 1307.167 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) -302.247 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) -75.883 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) -82.217 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 20.532 PER MEG" [1] 391.3012 404.0194 392.4100 410.6170 369.4377 [1] -453.3197 -715.7430 -582.5194 -688.7000 -819.0338 [1] "Nominal linear calibrations:" [1] "co2scl = 1.073 co2off = -16.57 o2scla = -0.044 o2offa = -172.4" [1] "(dV/V)/(dXO2/XO2) = -4.778" [1] "(dV/V)/d(O2/N2) = -3.777" [1] "Finding cal and sample periods" [1] "Median Cal: 2.95 minutes" [1] "Average Cal: 2.84 minutes" [1] "Shortest Cal: 0.48 minutes" [1] "Longest Cal: 5 minutes" [1] "Removed 3 calibration period(s) with less than 30 seconds of data" [1] "at: 14" [1] "at: 42" [1] "at: 51" [1] "Reading in aircraft data" [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.00142" [1] "HS CO2 vs. PACAB: m = -0.00278, r^2 = 0.26" [1] "LS CO2 vs. PACAB: m = -5.61e-05, r^2 = 0" [1] "HS+LS LIH2O vs. PACAB: m = -0.000123" [1] "HS LIH2O vs. PACAB: m = -0.000103, r^2 = 0.71" [1] "LS LIH2O vs. PACAB: m = -0.000142, r^2 = 0.76" [1] "HS+LS CO2 vs. LIH2O: m = 14.1" [1] "HS CO2 vs. LIH2O: m = 21.5, r^2 = 0.33" [1] "LS CO2 vs. LIH2O: m = 6.73, r^2 = 0.02" [1] "APCO2 vs. PACAB: m = 0.0703, r^2 = 0.57" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 0.0497" [1] "HS O2 vs. PACAB: m = 0.188, r^2 = 0.34" [1] "LS O2 vs. PACAB: m = -0.089, r^2 = 0.04" [1] "HS+LS O2 vs. LIH2O: m = 451" [1] "HS O2 vs. LIH2O: m = -196, r^2 = 0.01" [1] "LS O2 vs. LIH2O: m = 1100, r^2 = 0.2" [1] "HS+LS O2 vs. PAO2: m = 8.92" [1] "HS O2 vs. PAO2: m = 25.8, r^2 = 0.34" [1] "LS O2 vs. PAO2: m = -7.91, r^2 = 0.03" [1] "HS+LS O2 vs. TPBOX: m = 3.09" [1] "HS O2 vs. TPBOX: m = 3.13, r^2 = 0.2" [1] "LS O2 vs. TPBOX: m = 3.05, r^2 = 0.16" [1] "APO vs. PACAB: m = -1.5, r^2 = 0.57" [1] "APO vs. PAO2: m = -116, r^2 = 0.49" [1] "APO vs. TPBOX: m = 37.1, r^2 = 0.15" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 2.16, r^2 = 0.25" [1] "LS CO2 vs. LiCor Cell P: m = 3.78, r^2 = 0.19" [1] "HS CO2 vs. CO2 Vol P: m = 0.397, r^2 = 0.23" [1] "LS CO2 vs. CO2 Vol P: m = 0.13, r^2 = 0.01" [1] "HS CO2 vs. SLOPE: m = 0.311, r^2 = 0.14" [1] "LS CO2 vs. SLOPE: m = 0.528, r^2 = 0.26" [1] "HS O2 vs. O2 Vol P: m = 17.4, r^2 = 0.2" [1] "LS O2 vs. O2 Vol P: m = 4.77, r^2 = 0.01" [1] "HS O2 vs. O2 Cell T: m = -3.93, r^2 = 0.09" [1] "LS O2 vs. O2 Cell T: m = -0.0496, r^2 = 0" [1] "HS O2 vs. CO2 Vol P: m = 15.5, r^2 = 0.07" [1] "LS O2 vs. CO2 Vol P: m = 2.1, r^2 = 0" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = 1.85, r^2 = 0.01" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = -2.09, r^2 = 0.17" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = 15.5, r^2 = 0.07" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = 2.1, r^2 = 0" [1] "HS O2 vs. LIH2O: m = 486, r^2 = 0.02" [1] "LS O2 vs. LIH2O: m = 1250, r^2 = 0.13" [1] "HS O2 vs. SLOPE: m = -0.0621, r^2 = 0" [1] "LS O2 vs. SLOPE: m = 0.123, r^2 = 0.03" [1] "HS CO2 vs. Time: m = 24.754, r^2 = 0.93" [1] "LS CO2 vs. Time: m = 25.519, r^2 = 0.93" [1] "HS CO2 vs. Cylinder T: m = 1.214, r^2 = 0.29" [1] "LS CO2 vs. Cylinder T: m = 2.37, r^2 = 0.37" [1] "HS CO2 vs. Regulator T: m = 0.004, r^2 = 0" [1] "LS CO2 vs. Regulator T: m = 0.456, r^2 = 0.346" [1] "HS CO2 vs. Ref. Volumes T: m = 0.214, r^2 = 0.21" [1] "LS CO2 vs. Ref. Volumes T: m = 0.504, r^2 = 0.316" [1] "HS CO2 vs. Manifold T: m = 0.061, r^2 = 0.12" [1] "LS CO2 vs. Manifold T: m = 0.198, r^2 = 0.488" [1] "HS CO2 vs. Pump Box T: m = 0.022, r^2 = 0.06" [1] "LS CO2 vs. Pump Box T: m = 0.088, r^2 = 0.516" [1] "HS O2 vs. Cylinder T: m = -1.377, r^2 = 0" [1] "LS O2 vs. Cylinder T: m = 63.382, r^2 = 0.072" [1] "HS O2 vs. Regulator T: m = -11.12, r^2 = 0.22" [1] "LS O2 vs. Regulator T: m = -14.037, r^2 = 0.09" [1] "HS O2 vs. Ref. Volumes T: m = -10.895, r^2 = 0.12" [1] "LS O2 vs. Ref. Volumes T: m = -5.719, r^2 = 0.011" [1] "HS O2 vs. Manifold T: m = -2.702, r^2 = 0.05" [1] "LS O2 vs. Manifold T: m = 0.862, r^2 = 0.003" [1] "HS O2 vs. Pump Box T: m = 1.527, r^2 = 0.06" [1] "LS O2 vs. Pump Box T: m = 1.566, r^2 = 0.045" [1] "HS CO2 vs. WT P: m = -0.001, r^2 = 0.02" [1] "LS CO2 vs. WT P: m = 0, r^2 = 0" [1] "HS CO2 vs. SP P: m = -0.000654, r^2 = 0.01" [1] "HS CO2 vs. PACAB comb with SP P: m = -0.045, r^2 = 0.13" [1] "HS CO2 vs. SP P comb with PACAB: m = 0.045, r^2 = 0.13" [1] "LS CO2 vs. SP P: m = -0.000162, r^2 = 0" [1] "LS CO2 vs. PACAB comb with SP P: m = 0.058, r^2 = 0.1" [1] "LS CO2 vs. SP P comb with PACAB: m = -0.056, r^2 = 0.1" [1] "HS CO2 vs. WT FL: m = 0.042, r^2 = 0.03" [1] "LS CO2 vs. WT FL: m = 0.123, r^2 = 0.086" [1] "HS CO2 vs. SP FL: m = 0.033, r^2 = 0.04" [1] "LS CO2 vs. SP FL: m = 0.02, r^2 = 0.005" [1] "HS O2 vs. SLPDIFF: m = -0.022, r^2 = 0" [1] "LS O2 vs. SLPDIFF: m = 0.481, r^2 = 0.222" [1] "HS O2 vs. WT P: m = 0.088, r^2 = 0.04" [1] "LS O2 vs. WT P: m = -0.051, r^2 = 0.007" [1] "HS O2 vs. SP P: m = 0.087, r^2 = 0.03" [1] "LS O2 vs. SP P: m = -0.056, r^2 = 0.008" [1] "HS O2 vs. WT FL: m = -9.908, r^2 = 0.41" [1] "LS O2 vs. WT FL: m = -10.903, r^2 = 0.184" [1] "HS O2 vs. SP FL: m = -5.643, r^2 = 0.24" [1] "LS O2 vs. SP FL: m = -1.803, r^2 = 0.011" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): -8.81, 65.08" [1] "Empirical LP O2 lag flow(s): 102.5, 105.9" [1] "Empirical LP CO2 lag time(s): 41.65, 46.16" [1] "Empirical LP CO2 lag flow(s): 102.5, 105.9" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.84" [1] "Median all HS CO2 SD = 0.86" [1] "Median all LS CO2 SD = 0.83" [1] "Median all LT CO2 SD = 0.82" [1] "Median all WT CO2 SD = 0.8" [1] "Median all HS or LS CO2 SD = 0.86" [1] "Median all cal O2 SD = 3.62" [1] "Median all HS O2 SD = 3.34" [1] "Median all LS O2 SD = 3.44" [1] "Median all LT O2 SD = 3.96" [1] "Median all WT O2 SD = 2.42" [1] "Median all HS or LS O2 SD = 3.44" [1] "Median all cal CO2 Slope = 0.04" [1] "Median all HS CO2 Slope = 0.04" [1] "Median all LS CO2 Slope = 0.21" [1] "Median all LT CO2 Slope = 0.04" [1] "Median all WT CO2 Slope = 0.17" [1] "Median all HS or LS CO2 Slope = 0.09" [1] "Median all cal O2 Slope = 0.82" [1] "Median all HS O2 Slope = 0.74" [1] "Median all LS O2 Slope = 2.12" [1] "Median all LT O2 Slope = 3.35" [1] "Median all WT O2 Slope = -0.64" [1] "Median all HS or LS O2 Slope = 1.92" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 8.19 per meg" [1] "Initial O2 Calibration Offset = 8.95 per meg" [1] "SD of O2 Calibration (post-takeoff) = 3.46 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = 12.38 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = 16.76 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using ORCAS inlet volumes" [1] "before any lag: 43202.51 75686.57" [1] "Time lag adjustments = 11 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 56.4 at 107 sccm" [1] "Median O2 delay + tlagff = 57.2 at 107 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 52.8 at 107 sccm" [1] "Median O2 delay from 3-way + tlagff = 53.5 at 107 sccm" [1] "after calc and ff lag: 43133.96 75623.13" [1] "2025-05-13 14:04:54 MDT" [1] "Calculating 1-sec interpolated values" [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Not reporting 59 O2 values from manual exclude period 15.597894 to 15.599526" [1] "Not reporting 59 APO values from manual exclude period 15.597894 to 15.599526" [1] "Not reporting 130 O2 values from manual exclude period 15.812882 to 15.816471" [1] "Not reporting 130 APO values from manual exclude period 15.812882 to 15.816471" [1] "Not reporting 143 smoothed O2 values from manual exclude period 15.5972676537178 to 15.5989159114671" [1] "Not reporting 143 smoothed APO values from manual exclude period 15.5972676537178 to 15.5989159114671" [1] "Not reporting 311 smoothed O2 values from manual exclude period 15.8122722469998 to 15.8158698694852" [1] "Not reporting 311 smoothed APO values from manual exclude period 15.8122722469998 to 15.8158698694852" [1] "Not reporting 143 smoothed O2 values from manual exclude period 15.5972676537178 to 15.5989159114671" [1] "Not reporting 143 smoothed APO values from manual exclude period 15.5972676537178 to 15.5989159114671" [1] "Not reporting 311 smoothed O2 values from manual exclude period 15.8122722469998 to 15.8158698694852" [1] "Not reporting 311 smoothed APO values from manual exclude period 15.8122722469998 to 15.8158698694852" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item Read 27361 records [1] 1 2723 27361 [1] "done reading AO2" [1] 2016 2016 2016 2016 2016 2016 [1] 5 5 5 5 5 5 [1] 69158 69164 69174 69184 69194 69204 [1] "2016-01-05 19:12:38 UTC" "2016-01-05 19:12:44 UTC" [3] "2016-01-05 19:12:54 UTC" "2016-01-05 19:13:04 UTC" [5] "2016-01-05 19:13:14 UTC" "2016-01-05 19:13:24 UTC" [1] -301.49 -307.23 -306.56 -310.03 -312.49 -304.86 [1] 28594 [1] "Average Date / Time for slice RF01 = 2016-01-15 16:30:37.9653179645538" [1] "sum(lsel) = 2076" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 8.200641 821.952003 [1] 8.200641 821.952003 [1] 178.0480 991.7994 [1] 3.256131e-02 9.999990e+05 [1] "highestmid = 724.775614" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ORCAS RF01 APO_AO2 range = -331.7,-252.3" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 27361 records [1] 1 2723 27361 [1] "done reading AO2" [1] 2016 2016 2016 2016 2016 2016 [1] 5 5 5 5 5 5 [1] 69158 69164 69174 69184 69194 69204 [1] "2016-01-05 19:12:38 UTC" "2016-01-05 19:12:44 UTC" [3] "2016-01-05 19:12:54 UTC" "2016-01-05 19:13:04 UTC" [5] "2016-01-05 19:13:14 UTC" "2016-01-05 19:13:24 UTC" [1] -616.74 -615.88 -612.65 -613.33 -605.02 -591.01 [1] 28601 [1] "Average Date / Time for slice RF01 = 2016-01-15 16:30:37.9653179645538" [1] "sum(lsel) = 2076" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 8.200641 821.952003 [1] 8.200641 821.952003 [1] 178.0480 991.7994 [1] 3.256131e-02 9.999990e+05 [1] "highestmid = 724.775614" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ORCAS RF01 O2_AO2 range = -595.81,-505.76" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 27361 records [1] 1 2723 27361 [1] "done reading AO2" [1] 2016 2016 2016 2016 2016 2016 [1] 5 5 5 5 5 5 [1] 69158 69164 69174 69184 69194 69204 [1] "2016-01-05 19:12:38 UTC" "2016-01-05 19:12:44 UTC" [3] "2016-01-05 19:12:54 UTC" "2016-01-05 19:13:04 UTC" [5] "2016-01-05 19:13:14 UTC" "2016-01-05 19:13:24 UTC" [1] 410.011 408.755 408.268 407.738 405.688 404.472 [1] 32775 [1] "Average Date / Time for slice RF01 = 2016-01-15 16:31:35.0349385738373" [1] "sum(lsel) = 2118" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 8.200641 821.952003 [1] 8.200641 821.952003 [1] 178.0480 991.7994 [1] 3.256131e-02 9.999990e+05 [1] "highestmid = 724.775614" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "ORCAS RF01 CO2_AO2 range = 397.88,401.67" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 12 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"