[1] "2025-05-13 13:08:13 MDT" options [1,] "file" "110906a" [2,] "flight" "RF12" [3,] "project" "HIPPO5" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "8" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "TRUE" [26,] "vxavail" "TRUE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "posttoonly" [48,] "o2caltype" "posttoonly" [49,] "lih2oco" "-1" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "FALSE" [64,] "icartt" "0" [65,] "icarttrev" "0" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "110906a" [1] "Reading in flight and plotting intervals" Read 9 records [1] "Reading in /scr/raf/stephens/AO2DAT/110906a.mr" Read 15269 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.16 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.21 seconds" [1] "New JOGEST = 2.21 seconds" [1] "New VALVE SKIP = 27 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/110906a.hr" Read 61078 records [1] "HR FILE MATCHES" [1] "Converting hrdata statout" [1] "Tue May 13 01:08:13 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30069 description: HS CO2 = 374 O2 = -624" [1] "position 2 cylinder OK30070 description: LS CO2 = 392.02 O2 = -897.8" [1] "position 3 cylinder OK30071 description: LT CO2 = 380.46 O2 = -463" [1] "position 4 cylinder OK30054 description: WT CO2 = 384.45 O2 = -786.5" [1] "position 5 cylinder OK30055 description: LP CO2 = 343.64 O2 = -622.2" [1] 374.0003 392.0156 380.4609 384.4498 343.6435 [1] -624.0371 -897.8250 -463.0327 -786.4869 -622.2427 [1] "Nominal linear calibrations:" [1] "co2scl = 1.022 co2off = 8.63 o2scla = -0.052 o2offa = -22.4" [1] "(dV/V)/(dXO2/XO2) = -4.005" [1] "(dV/V)/d(O2/N2) = -3.166" [1] "Reading in very high resolution timeseries" Read 305380 records [1] 305380 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 01:08:14 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 01:08:16 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.166" [1] "o2scaleavenew_drelVdrelP = -4.005" [1] "median(o2scalenew) = -3.171" [1] "Empirical dV/V vs dP/P relationship =-2.194, r^2 =0.002, damping =0.548" [1] "Tue May 13 01:08:16 PM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "Plotting Jog Shapes" [1] "Tue May 13 01:09:01 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "RECALC TIME MATCHES" [1] "Tue May 13 01:09:01 PM MDT 2025 done recreating mr o2diffs" [1] "Screening 2 LiH2O values less than -1" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 110.954 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 80.251 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 83.622 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -14.211 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 14 [1] 99 [1] 125 [1] 125 [1] 125 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 1 249.8086 2289.354 953852.1 1 [2,] 2 249.8087 2236.375 956132.4 -1 [3,] 3 249.8087 2222.747 954070.3 1 [4,] 76 249.8109 1681.353 960350.5 -1 [5,] 144 249.8127 1607.993 962961.0 -1 [6,] 145 249.8128 1909.027 961432.8 1 [7,] 146 249.8128 2246.994 963681.8 -1 [8,] 148 249.8128 2511.802 963988.8 -1 [9,] 212 249.8147 2607.061 966121.3 -1 [10,] 213 249.8147 2407.077 963624.5 1 [11,] 214 249.8147 2025.041 965572.5 -1 [12,] 215 249.8148 1590.165 963686.6 1 [13,] 216 249.8148 1245.586 964936.4 -1 [14,] 286 249.8169 1373.990 966772.7 -1 [15,] 358 249.8191 1448.628 968102.5 -1 [16,] 359 249.8192 1962.336 966686.8 1 [17,] 360 249.8192 2438.052 969088.1 -1 [18,] 426 249.8212 2529.762 969939.6 -1 [19,] 427 249.8213 1949.709 967472.1 1 [20,] 428 249.8213 1710.249 969143.7 -1 [21,] 810 249.8316 1614.190 974403.3 -1 [22,] 811 249.8316 1991.669 972826.4 1 [23,] 812 249.8317 2390.425 975201.8 -1 [24,] 892 249.8337 2211.621 976775.4 -1 [25,] 970 249.8358 2089.293 978206.0 -1 [26,] 971 249.8358 1825.093 976165.7 1 [27,] 972 249.8358 1537.741 977701.2 -1 [28,] 1908 249.8610 1529.227 989285.3 -1 [29,] 1909 249.8610 1979.551 987753.9 1 [30,] 1910 249.8611 2424.448 990196.0 -1 [31,] 1976 249.8628 2472.191 990694.6 -1 [32,] 1977 249.8628 2113.788 988247.4 1 [33,] 1978 249.8628 1746.062 989989.8 -1 [34,] 2046 249.8646 1247.760 989910.1 -1 [35,] 2114 249.8663 1427.559 990463.4 -1 [36,] 2211 249.8688 1216.541 989129.3 1 [37,] 2212 249.8689 1292.458 990216.0 -1 [38,] 2213 249.8689 1359.792 988764.0 1 [39,] 3098 249.8956 1342.941 983300.6 -1 [40,] 3168 249.8978 1568.559 983981.5 -1 [41,] 3169 249.8978 1860.007 982424.5 1 [42,] 3170 249.8978 2170.878 984632.7 -1 [43,] 3172 249.8979 2481.530 984920.9 -1 [44,] 3236 249.8998 2509.916 985329.5 -1 [45,] 3237 249.8999 2185.285 982844.4 1 [46,] 3238 249.8999 1771.844 984573.6 -1 [47,] 4414 249.9304 1319.718 978269.0 -1 [48,] 4418 249.9305 1343.467 978313.1 -1 [49,] 4419 249.9305 1841.333 976980.4 1 [50,] 4420 249.9305 2325.198 979285.6 -1 [51,] 4500 249.9325 2419.276 979931.5 -1 [52,] 4501 249.9326 2061.547 977567.8 1 [53,] 4502 249.9326 1675.855 979213.9 -1 [54,] 5770 249.9650 1340.699 991424.3 -1 [55,] 5856 249.9672 1587.336 993745.5 -1 [56,] 5857 249.9673 1966.494 992181.7 1 [57,] 5858 249.9673 2364.351 994583.5 -1 [58,] 5936 249.9693 2482.973 996571.2 -1 [59,] 5937 249.9693 2240.595 994105.6 1 [60,] 5938 249.9693 1869.700 995942.2 -1 [61,] 5939 249.9693 1502.234 994141.8 1 [62,] 5940 249.9694 1257.373 995411.4 -1 [63,] 6018 249.9713 1231.734 996874.0 -1 [64,] 6019 249.9714 1609.170 995640.5 1 [65,] 6020 249.9714 1977.006 997651.7 -1 [66,] 7128 249.9997 1300.655 1000784.9 -1 [67,] 7132 249.9998 1289.561 1000845.6 -1 [68,] 7133 249.9999 1645.434 999555.1 1 [69,] 7134 249.9999 2063.487 1001682.1 -1 [70,] 7136 249.9999 2434.648 1002038.4 -1 [71,] 7214 250.0019 2439.980 1003038.6 -1 [72,] 7215 250.0020 2080.750 1000604.2 1 [73,] 7216 250.0020 1708.051 1002326.0 -1 [74,] 8486 250.0345 1191.881 1003610.6 -1 [75,] 8492 250.0346 1459.673 1003931.0 -1 [76,] 8572 250.0367 1565.741 1004649.0 -1 [77,] 8573 250.0367 1832.693 1003079.6 1 [78,] 8574 250.0367 2138.802 1005277.7 -1 [79,] 8576 250.0368 2439.617 1005569.4 -1 [80,] 8654 250.0387 2492.076 1005952.6 -1 [81,] 8655 250.0388 2150.945 1003444.6 1 [82,] 8656 250.0388 1695.798 1005125.7 -1 [83,] 9844 250.0692 1145.686 1004774.0 -1 [84,] 9848 250.0693 1160.060 1004776.9 -1 [85,] 9849 250.0693 1529.338 1003598.5 1 [86,] 9850 250.0694 1996.104 1005659.9 -1 [87,] 9852 250.0694 2438.018 1006050.8 -1 [88,] 9930 250.0714 2488.363 1005716.3 -1 [89,] 9931 250.0714 2254.714 1003199.0 1 [90,] 9932 250.0714 1945.161 1005119.2 -1 [91,] 9934 250.0715 1640.661 1004827.7 -1 [92,] 10014 250.0735 1298.185 1003826.1 -1 [93,] 11109 250.1016 1184.944 1004467.3 1 [94,] 11110 250.1016 1109.732 1005708.9 -1 [95,] 11111 250.1016 1089.674 1004680.8 1 [96,] 11202 250.1039 1127.552 1005311.7 -1 [97,] 11208 250.1041 1436.016 1005576.7 -1 [98,] 11288 250.1061 1560.015 1004941.2 -1 [99,] 11289 250.1061 1869.194 1003359.0 1 [100,] 11290 250.1062 2156.354 1005560.6 -1 [101,] 11292 250.1062 2437.953 1005811.9 -1 [102,] 11372 250.1083 2266.427 1005100.0 -1 [103,] 11452 250.1103 2119.654 1004431.8 -1 [104,] 11453 250.1103 1883.389 1002305.2 1 [105,] 11454 250.1103 1512.829 1003796.1 -1 [106,] 12562 250.1387 1132.089 1007376.6 -1 [107,] 12566 250.1388 1158.156 1007395.0 -1 [108,] 12567 250.1388 1670.743 1006209.5 1 [109,] 12568 250.1388 2332.716 1008565.6 -1 [110,] 12648 250.1409 2438.787 1008281.4 -1 [111,] 12649 250.1409 2010.280 1005820.0 1 [112,] 12650 250.1409 1665.254 1007481.9 -1 [113,] 13920 250.1734 1292.423 1014569.2 -1 [114,] 13926 250.1736 1530.838 1014826.4 -1 [115,] 14006 250.1756 1694.189 1015090.3 -1 [116,] 14007 250.1756 2051.530 1013359.1 1 [117,] 14008 250.1757 2404.578 1015808.4 -1 [118,] 14088 250.1777 2281.573 1015717.7 -1 [119,] 14089 250.1777 1804.415 1013431.0 1 [120,] 14090 250.1778 1219.163 1014656.1 -1 [121,] 15181 250.2057 1119.048 1008443.7 1 [122,] 15182 250.2057 1132.326 1009708.6 -1 [123,] 15183 250.2057 1325.956 1008715.4 1 [124,] 15184 250.2058 1427.687 1010459.2 -1 [125,] 15185 250.2058 1316.789 1009217.4 1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 11964 250.1234 9.23097e+11 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 110.954 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 80.251 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 83.622 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -14.211 PER MEG" [1] 374.0003 392.0156 380.4609 384.4498 343.6435 [1] -624.0371 -897.8250 -463.0327 -786.4869 -622.2427 [1] "Nominal linear calibrations:" [1] "co2scl = 1.022 co2off = 8.63 o2scla = -0.052 o2offa = -22.5" [1] "(dV/V)/(dXO2/XO2) = -3.992" [1] "(dV/V)/d(O2/N2) = -3.156" [1] "Finding cal and sample periods" [1] "Median Cal: 2.96 minutes" [1] "Average Cal: 2.91 minutes" [1] "Shortest Cal: 2.47 minutes" [1] "Longest Cal: 4.98 minutes" [1] "Removed 1 calibration period(s) with less than 30 seconds of data" [1] "at: 20" [1] "Reading in aircraft data" [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.0047" [1] "HS CO2 vs. PACAB: m = -0.00559, r^2 = 0.84" [1] "LS CO2 vs. PACAB: m = -0.00381, r^2 = 0.27" [1] "HS+LS LIH2O vs. PACAB: m = -0.00035" [1] "HS LIH2O vs. PACAB: m = -0.000349, r^2 = 0.95" [1] "LS LIH2O vs. PACAB: m = -0.000351, r^2 = 0.94" [1] "HS+LS CO2 vs. LIH2O: m = 13.9" [1] "HS CO2 vs. LIH2O: m = 15.9, r^2 = 0.68" [1] "LS CO2 vs. LIH2O: m = 12, r^2 = 0.34" [1] "APCO2 vs. PACAB: m = -0.012, r^2 = 0.02" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = -0.0126" [1] "HS O2 vs. PACAB: m = -0.0192, r^2 = 0" [1] "LS O2 vs. PACAB: m = -0.00593, r^2 = 0" [1] "HS+LS O2 vs. LIH2O: m = 46.6" [1] "HS O2 vs. LIH2O: m = 26, r^2 = 0" [1] "LS O2 vs. LIH2O: m = 67.3, r^2 = 0.01" [1] "HS+LS O2 vs. PAO2: m = -32.4" [1] "HS O2 vs. PAO2: m = -34.5, r^2 = 0.71" [1] "LS O2 vs. PAO2: m = -30.4, r^2 = 0.73" [1] "HS+LS O2 vs. TPBOX: m = 3.52" [1] "HS O2 vs. TPBOX: m = 1.11, r^2 = 0.01" [1] "LS O2 vs. TPBOX: m = 5.92, r^2 = 0.27" [1] "APO vs. PACAB: m = 0.204, r^2 = 0.02" [1] "APO vs. PAO2: m = -66.2, r^2 = 0.13" [1] "APO vs. TPBOX: m = 13.8, r^2 = 0.05" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = -5.15, r^2 = 0.23" [1] "LS CO2 vs. LiCor Cell P: m = -6.32, r^2 = 0.5" [1] "HS CO2 vs. CO2 Vol P: m = 0.223, r^2 = 0.04" [1] "LS CO2 vs. CO2 Vol P: m = 0.207, r^2 = 0.04" [1] "HS CO2 vs. SLOPE: m = 0.0774, r^2 = 0.01" [1] "LS CO2 vs. SLOPE: m = -0.476, r^2 = 0.27" [1] "HS O2 vs. O2 Vol P: m = -37.5, r^2 = 0.65" [1] "LS O2 vs. O2 Vol P: m = -32.1, r^2 = 0.46" [1] "HS O2 vs. O2 Cell T: m = 11.8, r^2 = 0.27" [1] "LS O2 vs. O2 Cell T: m = 11.1, r^2 = 0.23" [1] "HS O2 vs. CO2 Vol P: m = -41.4, r^2 = 0.47" [1] "LS O2 vs. CO2 Vol P: m = -31, r^2 = 0.23" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = 0.839, r^2 = 0" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = 9.89, r^2 = 0.07" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -41.4, r^2 = 0.47" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -31, r^2 = 0.23" [1] "HS O2 vs. LIH2O: m = -102, r^2 = 0.01" [1] "LS O2 vs. LIH2O: m = 48.1, r^2 = 0" [1] "HS O2 vs. SLOPE: m = -0.548, r^2 = 0.05" [1] "LS O2 vs. SLOPE: m = -0.0671, r^2 = 0" [1] "HS CO2 vs. Time: m = 16.527, r^2 = 0.93" [1] "LS CO2 vs. Time: m = 17.433, r^2 = 0.94" [1] "HS CO2 vs. Cylinder T: m = -0.464, r^2 = 0.15" [1] "LS CO2 vs. Cylinder T: m = -1.022, r^2 = 0.448" [1] "HS CO2 vs. Regulator T: m = -0.422, r^2 = 0.42" [1] "LS CO2 vs. Regulator T: m = -0.436, r^2 = 0.499" [1] "HS CO2 vs. Ref. Volumes T: m = -0.364, r^2 = 0.1" [1] "LS CO2 vs. Ref. Volumes T: m = -0.676, r^2 = 0.434" [1] "HS CO2 vs. Manifold T: m = -0.086, r^2 = 0.05" [1] "LS CO2 vs. Manifold T: m = -0.172, r^2 = 0.252" [1] "HS CO2 vs. Pump Box T: m = 0.029, r^2 = 0.01" [1] "LS CO2 vs. Pump Box T: m = -0.01, r^2 = 0.002" [1] "HS O2 vs. Cylinder T: m = 27.234, r^2 = 0.16" [1] "LS O2 vs. Cylinder T: m = 58.312, r^2 = 0.367" [1] "HS O2 vs. Regulator T: m = 23.893, r^2 = 0.41" [1] "LS O2 vs. Regulator T: m = 20.823, r^2 = 0.287" [1] "HS O2 vs. Ref. Volumes T: m = 41.279, r^2 = 0.42" [1] "LS O2 vs. Ref. Volumes T: m = 43.062, r^2 = 0.443" [1] "HS O2 vs. Manifold T: m = 16.487, r^2 = 0.55" [1] "LS O2 vs. Manifold T: m = 13.869, r^2 = 0.414" [1] "HS O2 vs. Pump Box T: m = 0.836, r^2 = 0" [1] "LS O2 vs. Pump Box T: m = 1.735, r^2 = 0.013" [1] "HS CO2 vs. WT P: m = -0.005, r^2 = 0.53" [1] "LS CO2 vs. WT P: m = -0.004, r^2 = 0.447" [1] "HS CO2 vs. SP P: m = -0.00513, r^2 = 0.65" [1] "HS CO2 vs. PACAB comb with SP P: m = -0.014, r^2 = 0.55" [1] "HS CO2 vs. SP P comb with PACAB: m = 0.009, r^2 = 0.55" [1] "LS CO2 vs. SP P: m = -0.00459, r^2 = 0.67" [1] "LS CO2 vs. PACAB comb with SP P: m = -0.021, r^2 = 0.52" [1] "LS CO2 vs. SP P comb with PACAB: m = 0.016, r^2 = 0.52" [1] "HS CO2 vs. WT FL: m = -0.171, r^2 = 0.34" [1] "LS CO2 vs. WT FL: m = -0.222, r^2 = 0.563" [1] "HS CO2 vs. SP FL: m = 0.107, r^2 = 0.33" [1] "LS CO2 vs. SP FL: m = 0.091, r^2 = 0.21" [1] "HS O2 vs. SLPDIFF: m = -0.274, r^2 = 0.03" [1] "LS O2 vs. SLPDIFF: m = -0.734, r^2 = 0.161" [1] "HS O2 vs. WT P: m = 0.021, r^2 = 0" [1] "LS O2 vs. WT P: m = 0, r^2 = 0" [1] "HS O2 vs. SP P: m = 0.031, r^2 = 0.01" [1] "LS O2 vs. SP P: m = 0.013, r^2 = 0.001" [1] "HS O2 vs. WT FL: m = 12.747, r^2 = 0.59" [1] "LS O2 vs. WT FL: m = 13.044, r^2 = 0.49" [1] "HS O2 vs. SP FL: m = 3.365, r^2 = 0.1" [1] "LS O2 vs. SP FL: m = 4.003, r^2 = 0.102" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): 12.44" [1] "Empirical LP O2 lag flow(s): 94.7" [1] "Empirical LP CO2 lag time(s): 7.95" [1] "Empirical LP CO2 lag flow(s): 94.7" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.76" [1] "Median all HS CO2 SD = 0.77" [1] "Median all LS CO2 SD = 0.78" [1] "Median all LT CO2 SD = 0.81" [1] "Median all WT CO2 SD = 0.8" [1] "Median all HS or LS CO2 SD = 0.77" [1] "Median all cal O2 SD = 2.23" [1] "Median all HS O2 SD = 2.07" [1] "Median all LS O2 SD = 2.49" [1] "Median all LT O2 SD = 1.7" [1] "Median all WT O2 SD = 2" [1] "Median all HS or LS O2 SD = 2.2" [1] "Median all cal CO2 Slope = 0" [1] "Median all HS CO2 Slope = -0.08" [1] "Median all LS CO2 Slope = 0.09" [1] "Median all LT CO2 Slope = -0.01" [1] "Median all WT CO2 Slope = -0.01" [1] "Median all HS or LS CO2 Slope = -0.02" [1] "Median all cal O2 Slope = 1.17" [1] "Median all HS O2 Slope = 1.36" [1] "Median all LS O2 Slope = 1.42" [1] "Median all LT O2 Slope = 1.44" [1] "Median all WT O2 Slope = 0.86" [1] "Median all HS or LS O2 Slope = 1.39" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 5.55 per meg" [1] "Initial O2 Calibration Offset = -9.47 per meg" [1] "SD of O2 Calibration (post-takeoff) = 3.3 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = -10.97 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = -12.83 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using HIPPO4-5 inlet volumes" [1] "before any lag: 69866.67 104370.16" [1] "Time lag adjustments = 8 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 45.3 at 93.7 sccm" [1] "Median O2 delay + tlagff = 46.1 at 93.7 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 43 at 93.7 sccm" [1] "Median O2 delay from 3-way + tlagff = 43.8 at 93.7 sccm" [1] "after calc and ff lag: 69818.52 104322.38" [1] "2025-05-13 13:09:47 MDT" [1] "Calculating 1-sec interpolated values" [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] -6.8849941 -5.2769786 -2.5949951 -2.2171161 3.1242254 2.7362433 [7] -1.9082893 -4.7911057 -4.7911057 -6.6938792 -6.3197545 -6.2696284 [13] -6.2696284 -3.8013819 -5.2714309 -7.3588153 -7.3588153 -7.3588153 [19] -2.8498963 -2.8498963 1.4469681 2.2472023 -2.9147410 -2.8109872 [25] -3.0448738 -6.0903127 -6.1141751 -10.4777520 -10.4237091 -6.9043269 [31] -6.8753401 -6.9302648 -6.9302648 -7.7762567 -8.0187828 -6.9170810 [37] -10.5849141 -12.4738320 -13.1614313 -13.1614313 -6.9163655 -4.6387752 [43] -4.6387752 -4.6387752 1.7394839 -0.6426781 -1.5804440 -1.5804440 [49] -1.5804440 -7.4171710 -7.4171710 -7.4171710 -7.4171710 -11.3489199 [55] -9.4015129 -9.4015129 -9.4015129 -14.8967064 -15.1938504 -15.2362233 [61] -15.2362233 -17.6188568 -17.8406193 -17.8406193 -17.2153829 -13.3469297 [67] -13.2864250 -13.2864250 -13.9288172 -17.0943447 -17.0943447 -17.0943447 [73] -14.7904242 -9.8955601 -9.1682751 -9.1682751 -5.9339306 -10.2860519 [79] -10.2860519 -10.2522782 -20.9057960 -16.2658433 -16.2658433 -16.2658433 [85] -36.0740554 -37.1547629 -37.1547629 -28.7153898 -24.4404972 -23.9406208 [91] -23.9406208 -23.5541144 -15.7227166 -15.7227166 -15.8220784 -16.8751458 [97] -17.3673171 -17.3673171 -16.3521415 -11.3735131 -11.1156481 -11.1156481 [103] -9.7569586 -10.1028265 -10.1060138 -10.1060138 -14.9038356 -17.7650391 [109] -17.7650391 -17.7650391 -11.7594647 -11.7594647 -11.7594647 -14.6288141 [115] -18.0461334 -18.1671521 -18.1671521 -13.8843712 -13.5119594 -13.5119594 [121] -12.7506872 -13.7986122 -12.0215832 -12.0215832 -12.0215832 -16.8430029 [127] -16.8430029 -16.8430029 -18.4801954 -20.0784576 -20.5626425 -20.5626425 [133] -16.7210198 -17.2024077 -17.2024077 -16.9794925 -13.0962797 -11.4480899 [139] -11.4480899 -11.4480899 -13.5383351 -13.5304729 -13.5304729 -12.5610172 [145] -7.4460991 -6.2789354 -6.2789354 -7.2284941 -10.5374338 -10.9680329 [151] -10.9680329 -14.0101169 -18.8656213 -19.2794198 -19.1321047 -10.5581007 [157] -8.1201533 -8.1201533 -11.6645728 -15.3375788 -18.4113379 -18.4113379 [163] -17.6379988 -16.5867821 -15.7248335 -15.7248335 -16.7604363 -13.1109237 [169] -12.8751586 -12.8751586 -10.5815521 -12.5102787 -12.8949932 -15.5669462 [175] -20.0356656 -21.0459292 -21.0459292 -15.2196864 -13.9987755 -13.4576373 [181] -13.4576373 -11.7114366 -11.4993537 -11.3685853 -11.3685853 -14.3337876 [187] -15.0259813 -15.2880269 -12.0159923 -8.0672644 -8.2176743 -8.2176743 [193] -10.8174012 -10.7004744 -7.6068730 -7.3597630 -14.0328074 -14.9284923 [199] -16.4492565 -16.4492565 -13.1929276 -11.1074191 -9.1943109 -7.2131582 [205] -6.6180888 -11.2745408 -11.2745408 -17.4373232 -17.3092988 -16.7457219 [211] -16.7457219 -9.3226486 -6.8221196 -5.9438548 -6.1513278 -9.9481621 [217] -11.1649976 -11.1649976 -11.0263764 -9.7974378 -8.8953615 -8.8761771 [223] -9.7079346 -11.8759071 -12.9605691 -12.9605691 -15.6083960 -15.7198542 [229] -15.7921607 -15.5268561 -14.6780843 -13.1402312 -13.1402312 -12.2704294 [235] -13.1675370 -15.8055929 -15.8055929 -12.0011094 -7.2324795 -5.8016415 [241] -5.8016415 -12.7186043 -16.3485119 -16.9487607 -12.3735323 -11.5326313 [247] -11.9251106 -11.9251106 -12.3241048 -12.0485292 -11.6377292 -11.6377292 [253] -15.3330183 -14.1221090 -14.1090107 -14.1090107 -13.1069577 -15.8391054 [259] -16.2304864 -16.2382498 -15.0581313 -13.7080884 -13.5462972 -14.6470738 [265] -15.0267386 -15.4447566 -15.4447566 -14.3392670 -10.9133535 -10.9133535 [271] -11.2643711 -14.6637963 -19.8313665 -19.8313665 -18.7331929 -18.0963967 [277] -14.9835019 -14.6257375 -11.1350516 -11.9730572 -13.7469920 -13.7469920 [283] -15.3822090 -13.4780358 -11.6092090 -11.6092090 -18.9849360 -17.9459737 [289] -17.8580809 -12.6095616 -13.2926027 -16.1195878 -16.3755376 -12.7494484 [295] -14.7423895 -17.6124824 -17.6124824 -17.5527147 -15.0677361 -11.9606314 [301] -11.9606314 -15.8887092 -13.9349715 -13.9349715 -12.8897898 -12.2735145 [1] 75.08258 78.20475 82.49301 85.85053 89.06202 92.16417 95.60637 [8] 98.63511 101.73294 104.07119 105.61450 107.17299 108.46774 109.89140 [15] 112.26362 114.34165 117.14009 119.71526 122.59473 125.89455 129.55197 [22] 133.12565 136.39138 140.61495 143.61862 147.31505 151.37663 155.65862 [29] 159.79326 163.05856 166.83745 170.67409 174.58178 178.34554 182.96238 [36] 186.48420 190.17619 193.51010 196.76077 198.88367 200.37936 201.86541 [43] 203.73593 205.27009 207.41786 209.15649 210.93503 212.63627 214.11066 [50] 216.14201 217.76951 219.33104 221.23451 222.81595 224.60203 226.24525 [57] 227.95487 230.50432 232.11612 234.08031 236.14153 238.10023 240.15348 [64] 241.97906 244.37753 246.03816 248.07667 249.89219 251.75791 253.83623 [71] 255.71927 257.56470 259.38815 261.45017 263.28968 265.05497 266.94067 [78] 268.74057 271.07631 272.82185 274.49319 276.40097 278.21220 280.18518 [85] 281.93922 283.83268 286.00211 287.83367 289.58417 291.49220 293.41968 [92] 294.86886 296.92573 298.76076 300.87730 302.60539 304.25008 306.10312 [99] 307.90474 309.64718 311.77020 313.39030 315.17179 316.85050 318.65308 [106] 320.52651 322.32685 324.33889 326.16984 328.36047 330.23921 331.90181 [113] 333.94256 335.64274 337.44626 338.94834 340.67218 342.54976 344.41738 [120] 346.21289 348.04165 349.45983 351.02827 352.76192 354.55171 356.25855 [127] 357.89124 359.70603 361.33177 362.95219 364.64409 366.63393 368.58573 [134] 370.26842 371.99421 373.61471 375.19265 376.94138 378.63220 380.08012 [141] 381.72059 383.02377 384.88483 386.41731 388.03445 389.64773 391.31266 [148] 393.03980 394.51761 396.13746 397.85042 399.34446 401.01696 402.47804 [155] 404.40867 405.79937 407.50337 409.17390 410.74758 412.20797 413.87488 [162] 415.38806 416.94360 418.37978 420.07826 421.77256 423.52835 425.11493 [169] 426.61895 428.09198 429.71184 431.36935 432.72682 434.26688 435.90739 [176] 437.36977 438.95833 440.77043 442.39156 443.74155 445.13957 446.57501 [183] 448.07510 449.83181 451.32312 452.81915 454.36132 455.76424 457.20875 [190] 458.45707 459.96984 461.26456 462.97482 464.24842 465.76250 467.30972 [197] 468.82369 470.15545 471.74111 473.41816 474.80425 476.35498 478.03383 [204] 479.25173 480.78644 482.30917 483.62688 485.09970 486.52088 487.90625 [211] 489.36467 490.73058 492.34240 493.66195 495.36134 496.89669 498.12160 [218] 499.67899 501.06092 502.43174 503.88419 505.23766 506.75628 508.19390 [225] 509.58693 511.07032 512.51551 513.72828 515.01306 516.45654 517.79183 [232] 519.23747 520.59037 521.92775 523.11463 524.66831 526.01026 527.27825 [239] 528.53806 529.75209 531.29430 532.54949 534.10503 535.24437 537.01543 [246] 538.29128 539.55612 540.88037 542.30170 543.45133 544.60502 545.90622 [253] 547.22478 548.62365 549.87405 551.24444 552.50285 553.93358 555.14686 [260] 556.25698 557.56530 558.71144 560.18409 561.34349 562.57551 563.68594 [267] 565.18383 566.74652 568.01196 569.00670 570.45342 571.76191 573.08931 [274] 574.03211 575.37237 576.44888 577.86408 579.17449 580.30752 581.50256 [281] 582.81907 584.07967 585.25998 586.60917 587.66173 588.59914 589.76911 [288] 591.32875 592.49244 593.77443 594.94945 596.25050 597.32320 598.51101 [295] 599.63281 600.68014 601.99666 603.17954 604.27102 605.28494 606.45881 [302] 607.74722 609.01171 610.14461 611.24288 612.49514 [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Not reporting 5002 O2 values from manual exclude period 250.08 to 367" [1] "Not reporting 5002 APO values from manual exclude period 250.08 to 367" [1] "Not reporting 10983 smoothed O2 values from manual exclude period 250.079480416341 to 366.999446998257" [1] "Not reporting 10983 smoothed APO values from manual exclude period 250.079480416341 to 366.999446998257" [1] "Not reporting 10983 smoothed O2 values from manual exclude period 250.079480416341 to 366.999446998257" [1] "Not reporting 10983 smoothed APO values from manual exclude period 250.079480416341 to 366.999446998257" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item Read 29206 records [1] 12 2918 29206 [1] "done reading AO2" [1] 2011 2011 2011 2011 2011 2011 [1] 221 221 221 221 221 221 [1] 54274 54280 54290 54300 54310 54320 [1] "2011-08-09 15:04:34 UTC" "2011-08-09 15:04:40 UTC" [3] "2011-08-09 15:04:50 UTC" "2011-08-09 15:05:00 UTC" [5] "2011-08-09 15:05:10 UTC" "2011-08-09 15:05:20 UTC" [1] NA NA NA NA NA NA [1] 24917 [1] "Average Date / Time for slice RF12 = 2011-09-06 23:22:03.24067807197571" [1] "sum(lsel) = 1475" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -0.213989 821.079559 [1] -0.213989 821.079559 [1] 178.9204 1000.2140 [1] 3.426857e-03 9.999990e+05 [1] "highestmid = 670.767731" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO5 RF12 APO_AO2 range = -329.82,-304.58" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 29206 records [1] 12 2918 29206 [1] "done reading AO2" [1] 2011 2011 2011 2011 2011 2011 [1] 221 221 221 221 221 221 [1] 54274 54280 54290 54300 54310 54320 [1] "2011-08-09 15:04:34 UTC" "2011-08-09 15:04:40 UTC" [3] "2011-08-09 15:04:50 UTC" "2011-08-09 15:05:00 UTC" [5] "2011-08-09 15:05:10 UTC" "2011-08-09 15:05:20 UTC" [1] NA NA NA NA NA NA [1] 24923 [1] "Average Date / Time for slice RF12 = 2011-09-06 23:22:03.24067807197571" [1] "sum(lsel) = 1475" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -0.213989 821.079559 [1] -0.213989 821.079559 [1] 178.9204 1000.2140 [1] 3.426857e-03 9.999990e+05 [1] "highestmid = 670.767731" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO5 RF12 O2_AO2 range = -543.16,-484.18" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 29206 records [1] 12 2918 29206 [1] "done reading AO2" [1] 2011 2011 2011 2011 2011 2011 [1] 221 221 221 221 221 221 [1] 54274 54280 54290 54300 54310 54320 [1] "2011-08-09 15:04:34 UTC" "2011-08-09 15:04:40 UTC" [3] "2011-08-09 15:04:50 UTC" "2011-08-09 15:05:00 UTC" [5] "2011-08-09 15:05:10 UTC" "2011-08-09 15:05:20 UTC" [1] NA NA NA NA NA NA [1] 26564 [1] "Average Date / Time for slice RF12 = 2011-09-07 00:56:28.7032418251038" [1] "sum(lsel) = 2406" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -0.213989 852.258270 [1] -0.213989 852.258270 [1] 147.7417 1000.2140 [1] 3.426857e-03 9.999990e+05 [1] "highestmid = 670.767731" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO5 RF12 CO2_AO2 range = 381.87,391.68" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 7 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 7 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 7 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 7 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 7 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 7 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"