[1] "2025-05-13 12:30:14 MDT" options [1,] "file" "110628a" [2,] "flight" "RF06" [3,] "project" "HIPPO4" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "5" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "TRUE" [26,] "vxavail" "TRUE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "posttoonly" [48,] "o2caltype" "posttoonly" [49,] "lih2oco" "-1" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "FALSE" [64,] "icartt" "0" [65,] "icarttrev" "0" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "110628a" [1] "Reading in flight and plotting intervals" Read 13 records [1] "Reading in /scr/raf/stephens/AO2DAT/110628a.mr" Read 13724 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.25 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.35 seconds" [1] "New JOGEST = 2.35 seconds" [1] "New VALVE SKIP = 25 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/110628a.hr" Read 54907 records [1] "HR FILE LENGTH NOT NSWITCH * MRDATA FILE LENGTH" [1] 13724 54904 [1] "Converting hrdata statout" [1] "Tue May 13 12:30:14 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30067 description: HS CO2 = 359 O2 = -354.1" [1] "position 2 cylinder OK30068 description: LS CO2 = 392.24 O2 = -933.9" [1] "position 3 cylinder OK30071 description: LT CO2 = 380.46 O2 = -460.6" [1] "position 4 cylinder OK30054 description: WT CO2 = 381.88 O2 = -848.5" [1] "position 5 cylinder OK30057 description: LP CO2 = 421.97 O2 = -1175.4" [1] 359.0023 392.2389 380.4643 381.8820 421.9668 [1] -354.1267 -933.8929 -460.5677 -848.4800 -1175.3737 [1] "Nominal linear calibrations:" [1] "co2scl = 1.007 co2off = 0.62 o2scla = -0.05 o2offa = -40.2" [1] "(dV/V)/(dXO2/XO2) = -4.16" [1] "(dV/V)/d(O2/N2) = -3.289" [1] "Reading in very high resolution timeseries" Read 274480 records [1] 274480 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 12:30:14 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 12:30:17 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.289" [1] "o2scaleavenew_drelVdrelP = -4.16" [1] "median(o2scalenew) = -3.292" [1] "Empirical dV/V vs dP/P relationship =-2.817, r^2 =0.319, damping =0.677" [1] "Tue May 13 12:30:17 PM MDT 2025 done redoing corrections" [1] "NON-INTEGER NGAS IN JOGAVES AT:" [1] 13708 $icochar [1] "0" "0" "180.27065" "179.9642" "180.09" [6] "180.12" "180.13" "180.17" "180.20" "180.23" [11] "00:09:00" "01:36:00" "180.128408" $ecochar [1] "367" "179.9642" "367" "180.09" "180.12" [6] "180.13" "180.17" "180.20" "180.23" "180.27065" [11] "00:11:00" "01:38:00" "180.128862" $flag [1] "all" "LP" "LP" "a" "b" "c" [7] "d" "e" "f" "g" "breath" "breath" [13] "screeno2" $ico2 [1] 0.0000 0.0000 180.2706 179.9642 180.0900 180.1200 180.1300 180.1700 [9] 180.2000 180.2300 179.0062 179.0667 180.1284 $eco2 [1] 367.0000 179.9642 367.0000 180.0900 180.1200 180.1300 180.1700 180.2000 [9] 180.2300 180.2706 179.0076 179.0681 180.1289 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 13707 13712 180.2706 7.608166 -0.00116545 0.00721325 0.0071405 13712 13708 13713 180.2707 7.617119 -0.00100600 0.00721710 0.0071710 13713 13709 13714 180.2707 7.608242 -0.00102140 0.00722655 0.0072085 13714 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 13707 10.5 1.00 52.00 26815.5 1 7.610879 7.610634 13708 10.5 4.75 52.75 6713.0 -1 7.619794 7.619583 13709 10.5 6.00 53.00 25.5 1 7.610936 7.610722 vuvsigpdprcorr 13707 7.609123 13708 7.618068 13709 7.609207 [1] 1.270625 1.270655 1.270684 [,1] [,2] [,3] [1,] 1.270579 1 1 [2,] 1.270590 -1 1 [3,] 1.270597 -1 1 [4,] 1.270603 -1 1 [5,] 1.270608 -1 1 [6,] 1.270619 1 1 [7,] 1.270625 1 1 [8,] 1.270631 1 1 [9,] 1.270638 1 1 [10,] 1.270649 -1 1 [11,] 1.270655 -1 6 [12,] 1.270661 -1 6 [13,] 1.270667 -1 6 [1] "NON-INTEGER NGASNUM IN JOGAVES AT:" [1] 13708 $icochar [1] "0" "0" "180.27065" "179.9642" "180.09" [6] "180.12" "180.13" "180.17" "180.20" "180.23" [11] "00:09:00" "01:36:00" "180.128408" $ecochar [1] "367" "179.9642" "367" "180.09" "180.12" [6] "180.13" "180.17" "180.20" "180.23" "180.27065" [11] "00:11:00" "01:38:00" "180.128862" $flag [1] "all" "LP" "LP" "a" "b" "c" [7] "d" "e" "f" "g" "breath" "breath" [13] "screeno2" $ico2 [1] 0.0000 0.0000 180.2706 179.9642 180.0900 180.1200 180.1300 180.1700 [9] 180.2000 180.2300 179.0062 179.0667 180.1284 $eco2 [1] 367.0000 179.9642 367.0000 180.0900 180.1200 180.1300 180.1700 180.2000 [9] 180.2300 180.2706 179.0076 179.0681 180.1289 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 13707 13712 180.2706 7.608166 -0.00116545 0.00721325 0.0071405 13712 13708 13713 180.2707 7.617119 -0.00100600 0.00721710 0.0071710 13713 13709 13714 180.2707 7.608242 -0.00102140 0.00722655 0.0072085 13714 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 13707 10.5 1.00 52.00 26815.5 1 7.610879 7.610634 13708 10.5 4.75 52.75 6713.0 -1 7.619794 7.619583 13709 10.5 6.00 53.00 25.5 1 7.610936 7.610722 vuvsigpdprcorr 13707 7.609123 13708 7.618068 13709 7.609207 [1] 1.270625 1.270655 1.270684 [,1] [,2] [,3] [1,] 1.270579 1 1 [2,] 1.270590 -1 1 [3,] 1.270597 -1 1 [4,] 1.270603 -1 1 [5,] 1.270608 -1 1 [6,] 1.270619 1 1 [7,] 1.270625 1 1 [8,] 1.270631 1 1 [9,] 1.270638 1 1 [10,] 1.270649 -1 1 [11,] 1.270655 -1 6 [12,] 1.270661 -1 6 [13,] 1.270667 -1 6 [1] "JOGAVES DOES NOT MATCH" [1] "MASKING 20 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 12:31:00 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 11670304.1976 SECONDS" [1] "Tue May 13 12:31:00 PM MDT 2025 done recreating mr o2diffs" [1] "Removed 944 medium-rate record(s) with accumulation errors" [1] "Screening 2 LiH2O values less than -1" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 30012.849 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 23770.527 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 23768.813 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -23.127 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 18 [1] 166 [1] 195 [1] 195 [1] 199 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 68 179.8880 1.997221e+03 1094231.7 -1 [2,] 69 179.8880 1.499873e+03 1091989.6 1 [3,] 70 179.8881 8.935750e+02 1092858.3 -1 [4,] 71 179.8881 5.582271e+02 1091871.5 1 [5,] 72 179.8881 4.171791e+02 1092283.7 -1 [6,] 134 179.8901 3.963348e+02 1089413.2 -1 [7,] 135 179.8901 1.246289e+03 1088905.8 1 [8,] 136 179.8902 2.160580e+03 1091246.9 -1 [9,] 198 179.8921 2.300197e+03 1088761.8 -1 [10,] 199 179.8922 1.655376e+03 1086193.0 1 [11,] 200 179.8922 1.315908e+03 1087539.3 -1 [12,] 201 179.8923 1.028642e+03 1086109.1 1 [13,] 202 179.8923 8.484605e+02 1087002.3 -1 [14,] 264 179.8943 8.995185e+02 1084836.8 -1 [15,] 265 179.8944 1.878480e+03 1083798.0 1 [16,] 266 179.8944 2.885306e+03 1086941.9 -1 [17,] 328 179.8963 3.135218e+03 1085124.1 -1 [18,] 329 179.8964 2.779955e+03 1081672.7 1 [19,] 330 179.8964 2.403305e+03 1084258.7 -1 [20,] 392 179.8984 2.222824e+03 1081858.6 -1 [21,] 393 179.8984 1.332515e+03 1079417.2 1 [22,] 394 179.8985 4.965310e+02 1079915.1 -1 [23,] 396 179.8985 3.700118e+02 1079711.7 -1 [24,] 454 179.9003 2.910588e+02 1077538.5 -1 [25,] 455 179.9004 3.255535e+02 1077184.5 1 [26,] 456 179.9004 7.876390e+02 1078094.6 -1 [27,] 457 179.9004 1.899884e+03 1077120.0 1 [28,] 458 179.9005 2.950670e+03 1080304.4 -1 [29,] 478 179.9011 3.175771e+03 1079776.1 -1 [30,] 479 179.9011 4.506243e+03 1076297.8 1 [31,] 480 179.9225 -3.147912e-01 1057245.2 1 [32,] 481 179.9225 2.009506e+03 1057168.4 -1 [33,] 482 179.9225 3.398317e+03 1053453.1 1 [34,] 483 179.9226 3.361478e+03 1056813.5 -1 [35,] 484 179.9226 2.902219e+03 1053663.2 1 [36,] 486 179.9227 2.945632e+03 1053510.3 1 [37,] 487 179.9227 3.067673e+03 1056574.8 -1 [38,] 488 179.9227 3.163720e+03 1053189.5 1 [39,] 569 179.9251 3.038821e+03 1054230.5 -1 [40,] 570 179.9251 1.909397e+03 1051022.3 1 [41,] 571 179.9252 7.171610e+02 1051730.9 -1 [42,] 573 179.9252 4.969783e+02 1051457.7 -1 [43,] 637 179.9269 4.737396e+02 1050106.7 -1 [44,] 638 179.9269 1.316999e+03 1049568.5 1 [45,] 639 179.9269 2.121767e+03 1051808.6 -1 [46,] 707 179.9287 2.082736e+03 1050436.7 -1 [47,] 773 179.9304 2.209277e+03 1049528.6 -1 [48,] 774 179.9304 2.668185e+03 1047156.6 1 [49,] 775 179.9305 3.087628e+03 1050416.1 -1 [50,] 969 179.9355 3.254356e+03 1047567.1 -1 [51,] 970 179.9355 3.004722e+03 1044122.7 1 [52,] 971 179.9356 2.695677e+03 1046909.8 -1 [53,] 973 179.9356 2.407385e+03 1046599.8 -1 [54,] 1049 179.9376 2.325783e+03 1045471.0 -1 [55,] 1050 179.9376 1.771546e+03 1043018.5 1 [56,] 1051 179.9376 1.119081e+03 1044096.0 -1 [57,] 1052 179.9377 6.766348e+02 1042982.1 1 [58,] 1053 179.9377 4.626683e+02 1043434.9 -1 [59,] 1131 179.9397 6.030291e+02 1042549.3 -1 [60,] 1152 179.9403 7.646394e+02 1041594.6 1 [61,] 1153 179.9403 9.774949e+02 1042381.4 -1 [62,] 1154 179.9470 -4.982047e+04 1041573.9 -1 [63,] 1155 179.9470 -8.797899e+04 1113061.3 1 [64,] 1156 179.9470 -5.741272e+04 1041487.5 -1 [65,] 1157 179.9471 3.386138e+03 1037738.0 1 [66,] 1158 179.9471 1.659850e+04 1040938.0 -1 [67,] 1159 179.9471 3.124162e+03 1037589.4 1 [68,] 1160 179.9472 -4.599892e+02 1040855.1 -1 [69,] 1161 179.9472 3.302677e+03 1037401.2 1 [70,] 1162 179.9472 4.268184e+03 1040807.4 -1 [71,] 1242 179.9498 3.289616e+03 1039025.0 -1 [72,] 1243 179.9498 2.213798e+03 1035565.5 1 [73,] 1244 179.9498 1.103026e+03 1036616.9 -1 [74,] 1245 179.9498 5.832631e+02 1035508.3 1 [75,] 1246 179.9499 4.995988e+02 1036003.5 -1 [76,] 1310 179.9519 3.438306e+02 1034459.5 -1 [77,] 1311 179.9519 9.014167e+02 1034081.6 1 [78,] 1312 179.9520 1.590816e+03 1035793.4 -1 [79,] 1313 179.9520 2.042645e+03 1034044.1 1 [80,] 1314 179.9520 2.261547e+03 1036384.5 -1 [81,] 1380 179.9541 2.167866e+03 1034772.2 -1 [82,] 1446 179.9562 2.060404e+03 1033226.3 -1 [83,] 1447 179.9562 2.445008e+03 1031074.5 1 [84,] 1448 179.9563 2.886575e+03 1034088.6 -1 [85,] 1450 179.9563 3.218393e+03 1034372.3 -1 [86,] 1708 179.9642 3.059517e+03 1032273.1 -1 [87,] 1709 179.9643 2.573663e+03 1029128.2 1 [88,] 1710 179.9643 1.912621e+03 1031092.0 -1 [89,] 1711 179.9643 1.557220e+03 1029125.8 1 [90,] 1712 179.9644 1.365281e+03 1030539.8 -1 [91,] 1727 179.9648 1.104097e+03 1028962.7 1 [92,] 1728 179.9649 1.155991e+03 1029986.2 -1 [93,] 1729 179.9649 1.167151e+03 1028729.0 1 [94,] 2486 179.9883 1.118180e+03 1023154.9 -1 [95,] 2488 179.9883 1.089298e+03 1023119.7 -1 [96,] 2489 179.9884 1.511219e+03 1021983.6 1 [97,] 2490 179.9884 2.004898e+03 1024073.7 -1 [98,] 2492 179.9885 2.321632e+03 1024331.7 -1 [99,] 2552 179.9903 2.273897e+03 1023884.1 -1 [100,] 2553 179.9904 1.448999e+03 1021557.8 1 [101,] 2554 179.9904 5.520924e+02 1022102.8 -1 [102,] 2614 179.9923 3.515969e+02 1021617.5 -1 [103,] 2615 179.9923 5.726598e+02 1021251.4 1 [104,] 2616 179.9923 8.457000e+02 1022165.0 -1 [105,] 3676 180.0229 1.091615e+03 1016951.8 -1 [106,] 3682 180.0231 6.695340e+02 1016459.1 -1 [107,] 3684 180.0231 4.139791e+02 1016170.7 -1 [108,] 3760 180.0251 5.376416e+02 1016192.9 -1 [109,] 3761 180.0251 1.338183e+03 1015617.9 1 [110,] 3762 180.0252 2.158883e+03 1017833.2 -1 [111,] 3838 180.0271 2.357270e+03 1017960.0 -1 [112,] 3839 180.0272 1.949594e+03 1015553.7 1 [113,] 3840 180.0272 1.415041e+03 1016931.2 -1 [114,] 3842 180.0272 9.118418e+02 1016457.8 -1 [115,] 5012 180.0577 1.083944e+03 1009461.6 -1 [116,] 5016 180.0578 1.163286e+03 1009583.7 -1 [117,] 5017 180.0578 1.683379e+03 1008382.6 1 [118,] 5018 180.0578 2.233872e+03 1010650.4 -1 [119,] 5096 180.0599 2.016886e+03 1010644.8 -1 [120,] 5097 180.0599 1.269831e+03 1008657.1 1 [121,] 5098 180.0599 5.380482e+02 1009173.8 -1 [122,] 5176 180.0619 5.558832e+02 1009277.8 -1 [123,] 5177 180.0619 8.006627e+02 1008712.4 1 [124,] 5178 180.0619 1.038589e+03 1009797.4 -1 [125,] 6190 180.0901 1.131583e+03 1000603.3 -1 [126,] 6192 180.0902 1.130365e+03 1000589.4 -1 [127,] 6193 180.0902 8.777020e+02 999422.8 1 [128,] 6194 180.0902 5.897984e+02 999967.3 -1 [129,] 6196 180.0903 3.787288e+02 999713.8 -1 [130,] 6270 180.0926 6.278468e+02 999369.2 -1 [131,] 6271 180.0926 1.451817e+03 998683.4 1 [132,] 6272 180.0927 2.222349e+03 1000913.8 -1 [133,] 6350 180.0948 2.087339e+03 1000300.0 -1 [134,] 6426 180.0968 2.289986e+03 1000328.7 -1 [135,] 6447 180.0975 2.343570e+03 1000402.5 -1 [136,] 6448 180.0975 1.807871e+03 998067.8 1 [137,] 6449 180.0975 1.270166e+03 999360.0 -1 [138,] 7241 180.1221 1.131202e+03 993130.3 -1 [139,] 7245 180.1223 1.185995e+03 993095.6 -1 [140,] 7246 180.1223 1.714996e+03 991865.1 1 [141,] 7247 180.1223 2.246213e+03 994082.0 -1 [142,] 7311 180.1242 2.364946e+03 992954.4 -1 [143,] 7312 180.1242 1.516793e+03 990585.2 1 [144,] 7313 180.1243 6.194970e+02 991153.3 -1 [145,] 7315 180.1243 4.210705e+02 990934.2 -1 [146,] 7379 180.1262 7.399885e+02 990081.8 -1 [147,] 7445 180.1282 1.044209e+03 988897.9 -1 [148,] 7446 180.1282 -1.084235e+03 987918.7 1 [149,] 7447 180.1282 -2.093651e+03 985893.6 -1 [150,] 7448 180.1283 5.628718e+02 987872.7 1 [151,] 7449 180.1283 3.701017e+03 991624.4 -1 [152,] 7450 180.1283 4.022432e+03 987857.5 1 [153,] 7451 180.1283 2.516599e+03 990264.1 -1 [154,] 7452 180.1284 1.183534e+03 987802.3 1 [155,] 7453 180.1284 5.051682e+02 988300.8 -1 [156,] 8407 180.1566 1.103231e+03 989839.8 -1 [157,] 8411 180.1567 1.050936e+03 989758.3 -1 [158,] 8412 180.1568 7.474038e+02 988698.1 1 [159,] 8413 180.1568 4.553947e+02 989105.1 -1 [160,] 8481 180.1585 5.154462e+02 988489.6 -1 [161,] 8482 180.1586 1.354834e+03 987950.7 1 [162,] 8483 180.1586 2.144935e+03 990083.3 -1 [163,] 8551 180.1603 2.169596e+03 989315.1 -1 [164,] 8552 180.1604 1.706793e+03 987190.9 1 [165,] 8553 180.1604 1.249161e+03 988440.5 -1 [166,] 9743 180.1914 1.090829e+03 988385.0 -1 [167,] 9747 180.1915 1.216361e+03 988475.5 -1 [168,] 9748 180.1915 1.721901e+03 987223.5 1 [169,] 9749 180.1915 2.244904e+03 989426.0 -1 [170,] 9827 180.1935 2.231281e+03 988101.5 -1 [171,] 9828 180.1936 1.389420e+03 985897.2 1 [172,] 9829 180.1936 5.868623e+02 986430.5 -1 [173,] 9907 180.1956 5.366629e+02 984772.3 -1 [174,] 9908 180.1956 8.132476e+02 984229.8 1 [175,] 9909 180.1956 1.045071e+03 985276.5 -1 [176,] 11097 180.2261 1.115406e+03 984431.4 -1 [177,] 11101 180.2262 1.086816e+03 984354.0 -1 [178,] 11102 180.2262 7.699809e+02 983252.8 1 [179,] 11103 180.2262 4.729708e+02 983669.1 -1 [180,] 11183 180.2283 4.741455e+02 982500.6 -1 [181,] 11184 180.2283 1.326988e+03 982007.6 1 [182,] 11185 180.2283 2.143572e+03 984117.5 -1 [183,] 11265 180.2304 2.253485e+03 983051.7 -1 [184,] 11266 180.2304 1.623927e+03 980842.1 1 [185,] 11267 180.2304 1.017740e+03 981805.3 -1 [186,] 11347 180.2325 9.425869e+02 980651.1 -1 [187,] 11348 180.2325 1.436792e+03 979698.3 1 [188,] 11349 180.2325 1.919194e+03 981574.8 -1 [189,] 11429 180.2345 1.930317e+03 980781.3 -1 [190,] 11430 180.2346 1.591399e+03 978914.7 1 [191,] 11431 180.2346 1.252265e+03 980153.2 -1 [192,] 12764 180.2707 1.173321e+03 977728.8 -1 [193,] 12766 180.2707 1.471007e+03 978053.4 -1 [194,] 12767 180.2707 1.997097e+03 976595.6 1 [195,] 12768 180.2708 2.593571e+03 979189.9 -1 [196,] 12770 180.2708 3.151431e+03 979664.0 -1 [197,] 12772 180.2709 2.729625e+03 979210.9 -1 [198,] 12776 180.2710 3.114943e+03 979627.2 -1 [199,] 12778 180.2711 3.331277e+03 979871.3 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 1393 179.9545 9.405960e+11 [2,] 2834 179.9992 2.890280e+02 [3,] 5055 180.0588 1.005914e+04 [4,] 5854 180.0801 9.680963e+08 [5,] 8668 180.1634 9.730960e+11 [6,] 11849 180.2453 3.889190e+02 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 113.155 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 85.015 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 85.467 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -23.127 PER MEG" [1] 180.1284 180.1289 [1] "Screened 14 O2 values from screeno2 period 180.128408 to 180.128862" [1] "Screened 1 O2 and CO2 values when pdsp not controlling" [1] "Screened 4 O2 and CO2 values when pdwt not controlling" [1] "Screened 4 O2 values when pdo2 not controlling" [1] 359.0023 392.2389 380.4643 381.8820 421.9668 [1] -354.1267 -933.8929 -460.5677 -848.4800 -1175.3737 [1] "Nominal linear calibrations:" [1] "co2scl = 1.007 co2off = 0.52 o2scla = -0.051 o2offa = -40" [1] "(dV/V)/(dXO2/XO2) = -4.145" [1] "(dV/V)/d(O2/N2) = -3.277" [1] "Finding cal and sample periods" [1] "Median Cal: 2.91 minutes" [1] "Average Cal: 2.78 minutes" [1] "Shortest Cal: 1.02 minutes" [1] "Longest Cal: 5 minutes" [1] "Removed 5 calibration period(s) with less than 30 seconds of data" [1] "at: 8" [1] "at: 17" [1] "at: 24" [1] "at: 35" [1] "at: 47" [1] "Reading in aircraft data" [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.0051" [1] "HS CO2 vs. PACAB: m = -0.00407, r^2 = 0.37" [1] "LS CO2 vs. PACAB: m = -0.00613, r^2 = 0.79" [1] "HS+LS LIH2O vs. PACAB: m = -0.000161" [1] "HS LIH2O vs. PACAB: m = -0.00017, r^2 = 0.9" [1] "LS LIH2O vs. PACAB: m = -0.000152, r^2 = 0.87" [1] "HS+LS CO2 vs. LIH2O: m = 29.4" [1] "HS CO2 vs. LIH2O: m = 25, r^2 = 0.42" [1] "LS CO2 vs. LIH2O: m = 33.8, r^2 = 0.74" [1] "APCO2 vs. PACAB: m = -0.0125, r^2 = 0.07" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 0.126" [1] "HS O2 vs. PACAB: m = 0.13, r^2 = 0.04" [1] "LS O2 vs. PACAB: m = 0.121, r^2 = 0.14" [1] "HS+LS O2 vs. LIH2O: m = -657" [1] "HS O2 vs. LIH2O: m = -703, r^2 = 0.03" [1] "LS O2 vs. LIH2O: m = -611, r^2 = 0.1" [1] "HS+LS O2 vs. PAO2: m = 39.4" [1] "HS O2 vs. PAO2: m = 15.3, r^2 = 0.01" [1] "LS O2 vs. PAO2: m = 63.5, r^2 = 0.43" [1] "HS+LS O2 vs. TPBOX: m = -2.63" [1] "HS O2 vs. TPBOX: m = -0.284, r^2 = 0" [1] "LS O2 vs. TPBOX: m = -4.97, r^2 = 0.21" [1] "APO vs. PACAB: m = 0.218, r^2 = 0.07" [1] "APO vs. PAO2: m = -34.7, r^2 = 0.03" [1] "APO vs. TPBOX: m = -1.89, r^2 = 0" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 6.99, r^2 = 0.47" [1] "LS CO2 vs. LiCor Cell P: m = 0.0294, r^2 = 0" [1] "HS CO2 vs. CO2 Vol P: m = 0.93, r^2 = 0.54" [1] "LS CO2 vs. CO2 Vol P: m = 0.451, r^2 = 0.1" [1] "HS CO2 vs. SLOPE: m = -0.308, r^2 = 0.06" [1] "LS CO2 vs. SLOPE: m = -0.903, r^2 = 0.36" [1] "HS O2 vs. O2 Vol P: m = -13.7, r^2 = 0.01" [1] "LS O2 vs. O2 Vol P: m = 51.6, r^2 = 0.25" [1] "HS O2 vs. O2 Cell T: m = -22.9, r^2 = 0.09" [1] "LS O2 vs. O2 Cell T: m = -35.9, r^2 = 0.52" [1] "HS O2 vs. CO2 Vol P: m = -28.2, r^2 = 0.15" [1] "LS O2 vs. CO2 Vol P: m = -3.45, r^2 = 0" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = 0.259, r^2 = 0.07" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = -7.86, r^2 = 0.14" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -28.2, r^2 = 0.15" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -3.45, r^2 = 0" [1] "HS O2 vs. LIH2O: m = -629, r^2 = 0.02" [1] "LS O2 vs. LIH2O: m = -625, r^2 = 0.1" [1] "HS O2 vs. SLOPE: m = -2.38, r^2 = 0.28" [1] "LS O2 vs. SLOPE: m = -0.363, r^2 = 0.04" [1] "HS CO2 vs. Time: m = 24.99, r^2 = 0.91" [1] "LS CO2 vs. Time: m = 24.468, r^2 = 0.9" [1] "HS CO2 vs. Cylinder T: m = -1.946, r^2 = 0.09" [1] "LS CO2 vs. Cylinder T: m = -2.959, r^2 = 0.502" [1] "HS CO2 vs. Regulator T: m = -0.231, r^2 = 0.04" [1] "LS CO2 vs. Regulator T: m = 0.026, r^2 = 0.001" [1] "HS CO2 vs. Ref. Volumes T: m = 1.542, r^2 = 0.63" [1] "LS CO2 vs. Ref. Volumes T: m = 0.415, r^2 = 0.037" [1] "HS CO2 vs. Manifold T: m = 0.492, r^2 = 0.17" [1] "LS CO2 vs. Manifold T: m = 0.146, r^2 = 0.019" [1] "HS CO2 vs. Pump Box T: m = 0.209, r^2 = 0.54" [1] "LS CO2 vs. Pump Box T: m = 0.146, r^2 = 0.345" [1] "HS O2 vs. Cylinder T: m = -50.327, r^2 = 0.02" [1] "LS O2 vs. Cylinder T: m = 2.642, r^2 = 0" [1] "HS O2 vs. Regulator T: m = 7.498, r^2 = 0.01" [1] "LS O2 vs. Regulator T: m = -14.744, r^2 = 0.169" [1] "HS O2 vs. Ref. Volumes T: m = -31.724, r^2 = 0.08" [1] "LS O2 vs. Ref. Volumes T: m = -17.37, r^2 = 0.037" [1] "HS O2 vs. Manifold T: m = 0.067, r^2 = 0" [1] "LS O2 vs. Manifold T: m = -26.105, r^2 = 0.359" [1] "HS O2 vs. Pump Box T: m = -2.111, r^2 = 0.02" [1] "LS O2 vs. Pump Box T: m = -5.092, r^2 = 0.243" [1] "HS CO2 vs. WT P: m = -0.006, r^2 = 0.21" [1] "LS CO2 vs. WT P: m = -0.006, r^2 = 0.667" [1] "HS CO2 vs. SP P: m = -0.00546, r^2 = 0.64" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.262, r^2 = 0.33" [1] "HS CO2 vs. SP P comb with PACAB: m = -0.268, r^2 = 0.33" [1] "LS CO2 vs. SP P: m = -0.00646, r^2 = 0.79" [1] "LS CO2 vs. PACAB comb with SP P: m = -0.001, r^2 = 0.67" [1] "LS CO2 vs. SP P comb with PACAB: m = -0.006, r^2 = 0.67" [1] "HS CO2 vs. WT FL: m = -0.273, r^2 = 0.06" [1] "LS CO2 vs. WT FL: m = -0.672, r^2 = 0.496" [1] "HS CO2 vs. SP FL: m = 0.169, r^2 = 0.21" [1] "LS CO2 vs. SP FL: m = 0.205, r^2 = 0.584" [1] "HS O2 vs. SLPDIFF: m = -0.282, r^2 = 0.07" [1] "LS O2 vs. SLPDIFF: m = 0.466, r^2 = 0.101" [1] "HS O2 vs. WT P: m = 0.113, r^2 = 0.03" [1] "LS O2 vs. WT P: m = 0.122, r^2 = 0.143" [1] "HS O2 vs. SP P: m = 0.11, r^2 = 0.02" [1] "LS O2 vs. SP P: m = 0.123, r^2 = 0.138" [1] "HS O2 vs. WT FL: m = 33.038, r^2 = 0.25" [1] "LS O2 vs. WT FL: m = 13.24, r^2 = 0.111" [1] "HS O2 vs. SP FL: m = -2.207, r^2 = 0.01" [1] "LS O2 vs. SP FL: m = -3.885, r^2 = 0.121" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): 11.92, 13.39" [1] "Empirical LP O2 lag flow(s): 91.4, 94.8" [1] "Empirical LP CO2 lag time(s): 6.22, 8.29" [1] "Empirical LP CO2 lag flow(s): 91.4, 94.8" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.78" [1] "Median all HS CO2 SD = 0.73" [1] "Median all LS CO2 SD = 0.79" [1] "Median all LT CO2 SD = 0.84" [1] "Median all WT CO2 SD = 0.88" [1] "Median all HS or LS CO2 SD = 0.77" [1] "Median all cal O2 SD = 1.87" [1] "Median all HS O2 SD = 1.83" [1] "Median all LS O2 SD = 1.87" [1] "Median all LT O2 SD = 2.31" [1] "Median all WT O2 SD = 1.46" [1] "Median all HS or LS O2 SD = 1.86" [1] "Median all cal CO2 Slope = 0.02" [1] "Median all HS CO2 Slope = 0.07" [1] "Median all LS CO2 Slope = 0" [1] "Median all LT CO2 Slope = -0.04" [1] "Median all WT CO2 Slope = 0.04" [1] "Median all HS or LS CO2 Slope = 0.02" [1] "Median all cal O2 Slope = 0.98" [1] "Median all HS O2 Slope = 1.51" [1] "Median all LS O2 Slope = 1.44" [1] "Median all LT O2 Slope = 1.71" [1] "Median all WT O2 Slope = -0.23" [1] "Median all HS or LS O2 Slope = 1.48" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 6.06 per meg" [1] "Initial O2 Calibration Offset = 9.94 per meg" [1] "SD of O2 Calibration (post-takeoff) = 3.88 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = 11.99 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = 2.22 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using HIPPO4-5 inlet volumes" [1] "before any lag: 76540.03 109825.98" [1] "Time lag adjustments = 5 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 42.6 at 94.3 sccm" [1] "Median O2 delay + tlagff = 43.4 at 94.3 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 39.9 at 94.3 sccm" [1] "Median O2 delay from 3-way + tlagff = 40.8 at 94.3 sccm" [1] "after calc and ff lag: 76493.9 109781.84" [1] "2025-05-13 12:31:39 MDT" [1] "Calculating 1-sec interpolated values" [1] "Screened 1 1-Hz values because of data gaps at:" [1] 179.9857 [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item Read 26401 records [1] 6 2637 26401 [1] "done reading AO2" [1] 2011 2011 2011 2011 2011 2011 [1] 158 158 158 158 158 158 [1] 61512 61520 61530 61540 61550 61560 [1] "2011-06-07 17:05:12 UTC" "2011-06-07 17:05:20 UTC" [3] "2011-06-07 17:05:30 UTC" "2011-06-07 17:05:40 UTC" [5] "2011-06-07 17:05:50 UTC" "2011-06-07 17:06:00 UTC" [1] NA NA NA NA NA NA [1] 27408 [1] "Average Date / Time for slice RF06 = 2011-06-29 02:49:51.6666667461395" [1] "sum(lsel) = 2196" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -38.95862 837.62720 [1] -38.95862 837.62720 [1] 162.3728 1038.9586 [1] 5.022857e-03 9.999990e+05 [1] "highestmid = 670.705444" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO4 RF06 APO_AO2 range = -370.74,-333.34" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 26401 records [1] 6 2637 26401 [1] "done reading AO2" [1] 2011 2011 2011 2011 2011 2011 [1] 158 158 158 158 158 158 [1] 61512 61520 61530 61540 61550 61560 [1] "2011-06-07 17:05:12 UTC" "2011-06-07 17:05:20 UTC" [3] "2011-06-07 17:05:30 UTC" "2011-06-07 17:05:40 UTC" [5] "2011-06-07 17:05:50 UTC" "2011-06-07 17:06:00 UTC" [1] NA NA NA NA NA NA [1] 27421 [1] "Average Date / Time for slice RF06 = 2011-06-29 02:49:51.6666667461395" [1] "sum(lsel) = 2196" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -38.95862 837.62720 [1] -38.95862 837.62720 [1] 162.3728 1038.9586 [1] 5.022857e-03 9.999990e+05 [1] "highestmid = 670.705444" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO4 RF06 O2_AO2 range = -571.74,-541.99" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 26401 records [1] 6 2637 26401 [1] "done reading AO2" [1] 2011 2011 2011 2011 2011 2011 [1] 158 158 158 158 158 158 [1] 61512 61520 61530 61540 61550 61560 [1] "2011-06-07 17:05:12 UTC" "2011-06-07 17:05:20 UTC" [3] "2011-06-07 17:05:30 UTC" "2011-06-07 17:05:40 UTC" [5] "2011-06-07 17:05:50 UTC" "2011-06-07 17:06:00 UTC" [1] NA NA NA NA NA NA [1] 27570 [1] "Average Date / Time for slice RF06 = 2011-06-29 02:49:52.0755574703217" [1] "sum(lsel) = 2197" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -38.95862 837.62720 [1] -38.95862 837.62720 [1] 162.3728 1038.9586 [1] 5.022857e-03 9.999990e+05 [1] "highestmid = 670.705444" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO4 RF06 CO2_AO2 range = 385.37,392.3" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 46 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 46 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 46 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 46 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 46 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 46 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 46 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"