[1] "2025-05-13 12:26:18 MDT" options [1,] "file" "110625a" [2,] "flight" "RF05" [3,] "project" "HIPPO4" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "5" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "TRUE" [26,] "vxavail" "TRUE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "posttoonly" [48,] "o2caltype" "posttoonly" [49,] "lih2oco" "-1" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "FALSE" [64,] "icartt" "0" [65,] "icarttrev" "0" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "110625a" [1] "Reading in flight and plotting intervals" Read 14 records [1] "Reading in /scr/raf/stephens/AO2DAT/110625a.mr" Read 13177 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.25 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.22 seconds" [1] "New JOGEST = 2.22 seconds" [1] "New VALVE SKIP = 27 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/110625a.hr" Read 52708 records [1] "HR FILE MATCHES" [1] "Converting hrdata statout" [1] "Tue May 13 12:26:18 PM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30067 description: HS CO2 = 359 O2 = -354" [1] "position 2 cylinder OK30068 description: LS CO2 = 392.24 O2 = -933.6" [1] "position 3 cylinder OK30071 description: LT CO2 = 380.46 O2 = -460.5" [1] "position 4 cylinder OK30053 description: WT CO2 = 381.18 O2 = -812" [1] "position 5 cylinder OK30057 description: LP CO2 = 421.97 O2 = -1174.6" [1] 359.0019 392.2379 380.4640 381.1763 421.9671 [1] -354.0467 -933.6388 -460.5297 -811.9571 -1174.5777 [1] "Nominal linear calibrations:" [1] "co2scl = 0.981 co2off = 5.21 o2scla = -0.05 o2offa = -27.6" [1] "(dV/V)/(dXO2/XO2) = -4.15" [1] "(dV/V)/d(O2/N2) = -3.281" [1] "Reading in very high resolution timeseries" Read 263540 records [1] 263540 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 12:26:19 PM MDT 2025 done approxing mr variables" [1] "Tue May 13 12:26:21 PM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.281" [1] "o2scaleavenew_drelVdrelP = -4.15" [1] "median(o2scalenew) = -3.279" [1] "Empirical dV/V vs dP/P relationship =-2.648, r^2 =0.005, damping =0.638" [1] "Tue May 13 12:26:21 PM MDT 2025 done redoing corrections" [1] "NON-INTEGER NGAS IN JOGAVES AT:" [1] 2007 12853 $icochar [1] "0" "0" "177.1804" "22:07:00" "176.943914" [6] "176.983494" "177.013810" "177.089812" "177.112339" "177.172761" [11] "177.009389" "177.047495" "176.957809" "176.994020" $ecochar [1] "367" "176.8958" "367" "22:08:00" "176.960546" [6] "176.997178" "177.036548" "177.114865" "177.123076" "177.178866" [11] "177.011916" "177.048548" "176.962020" "176.999915" $flag [1] "all" "LP" "LP" "breath" "screensampo2" [6] "screensampo2" "screensampo2" "screensampo2" "screensampo2" "screensampo2" [11] "screeno2" "screeno2" "screensampo2" "screensampo2" $ico2 [1] 0.0000 0.0000 177.1804 176.9215 176.9439 176.9835 177.0138 177.0898 [9] 177.1123 177.1728 177.0094 177.0475 176.9578 176.9940 $eco2 [1] 367.0000 176.8958 367.0000 176.9222 176.9605 176.9972 177.0365 177.1149 [9] 177.1231 177.1789 177.0119 177.0485 176.9620 176.9999 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 2006 2006 176.8958 8.317721 0.00161880 0.00496560 0.00488400 2006 2007 2007 176.8958 8.288495 -0.00143135 0.00499315 0.00485175 2007 2008 2008 176.8958 8.305318 -0.00253540 0.00502425 0.00490150 2008 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 2006 10.5 6.00 16.00 11810.50 -1 8.318873 8.319245 2007 10.5 2.25 16.75 2961.75 1 8.290707 8.290379 2008 10.5 1.00 17.00 25.50 -1 8.307934 8.307351 vuvsigpdprcorr 2006 8.318104 2007 8.289236 2008 8.306199 [1] 0.8957741 0.8958031 0.8958328 [,1] [,2] [,3] [1,] 0.895786 -1 6 [2,] 0.895797 1 6 [3,] 0.895803 1 1 [4,] 0.895809 1 1 [5,] 0.895815 1 1 [6,] 0.895827 -1 1 [7,] 0.895833 -1 1 [8,] 0.895838 -1 1 [9,] 0.895845 -1 1 [10,] 0.895856 1 1 [11,] 0.895862 1 1 [12,] 0.895868 1 1 [13,] 0.895874 1 1 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 12852 12852 177.1804 8.068326 -0.00103400 0.01102470 0.01097600 12852 12853 12853 177.1804 8.080204 -0.00100235 0.01103905 0.01102925 12853 12854 12854 177.1804 8.068429 -0.00109275 0.01103650 0.01105975 12854 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 12852 10.5 1.00 45.00 21350.50 1 8.072508 8.072273 12853 10.5 4.75 45.75 5346.75 -1 8.084407 8.084179 12854 10.5 6.00 46.00 25.50 1 8.072666 8.072417 vuvsigpdprcorr 12852 8.069769 12853 8.081667 12854 8.069911 [1] 1.180380 1.180405 1.180431 [,1] [,2] [,3] [1,] 1.180391 1 1 [2,] 1.180399 -1 1 [3,] 1.180405 -1 6 [4,] 1.180411 -1 6 [5,] 1.180416 -1 6 [6,] 1.180425 1 6 [7,] 1.180431 1 6 [8,] 1.180436 1 6 [9,] 1.180442 1 6 [10,] 1.180450 -1 6 [11,] 1.180456 -1 6 [12,] 1.180462 -1 6 [13,] 1.180467 -1 6 [1] "NON-INTEGER NGASNUM IN JOGAVES AT:" [1] 2007 12853 $icochar [1] "0" "0" "177.1804" "22:07:00" "176.943914" [6] "176.983494" "177.013810" "177.089812" "177.112339" "177.172761" [11] "177.009389" "177.047495" "176.957809" "176.994020" $ecochar [1] "367" "176.8958" "367" "22:08:00" "176.960546" [6] "176.997178" "177.036548" "177.114865" "177.123076" "177.178866" [11] "177.011916" "177.048548" "176.962020" "176.999915" $flag [1] "all" "LP" "LP" "breath" "screensampo2" [6] "screensampo2" "screensampo2" "screensampo2" "screensampo2" "screensampo2" [11] "screeno2" "screeno2" "screensampo2" "screensampo2" $ico2 [1] 0.0000 0.0000 177.1804 176.9215 176.9439 176.9835 177.0138 177.0898 [9] 177.1123 177.1728 177.0094 177.0475 176.9578 176.9940 $eco2 [1] 367.0000 176.8958 367.0000 176.9222 176.9605 176.9972 177.0365 177.1149 [9] 177.1231 177.1789 177.0119 177.0485 176.9620 176.9999 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 2006 2006 176.8958 8.317721 0.00161880 0.00496560 0.00488400 2006 2007 2007 176.8958 8.288495 -0.00143135 0.00499315 0.00485175 2007 2008 2008 176.8958 8.305318 -0.00253540 0.00502425 0.00490150 2008 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 2006 10.5 6.00 16.00 11810.50 -1 8.318873 8.319245 2007 10.5 2.25 16.75 2961.75 1 8.290707 8.290379 2008 10.5 1.00 17.00 25.50 -1 8.307934 8.307351 vuvsigpdprcorr 2006 8.318104 2007 8.289236 2008 8.306199 [1] 0.8957741 0.8958031 0.8958328 [,1] [,2] [,3] [1,] 0.895786 -1 6 [2,] 0.895797 1 6 [3,] 0.895803 1 1 [4,] 0.895809 1 1 [5,] 0.895815 1 1 [6,] 0.895827 -1 1 [7,] 0.895833 -1 1 [8,] 0.895838 -1 1 [9,] 0.895845 -1 1 [10,] 0.895856 1 1 [11,] 0.895862 1 1 [12,] 0.895868 1 1 [13,] 0.895874 1 1 jognum vhrtime vuvsigts pdo2sigts pdrefsigts pdrefsigusedts jognumts 12852 12852 177.1804 8.068326 -0.00103400 0.01102470 0.01097600 12852 12853 12853 177.1804 8.080204 -0.00100235 0.01103905 0.01102925 12853 12854 12854 177.1804 8.068429 -0.00109275 0.01103650 0.01105975 12854 jogposts ngasts ngasnumts ngasposts posnegts vuvsiguncorr vuvsigpdcorr 12852 10.5 1.00 45.00 21350.50 1 8.072508 8.072273 12853 10.5 4.75 45.75 5346.75 -1 8.084407 8.084179 12854 10.5 6.00 46.00 25.50 1 8.072666 8.072417 vuvsigpdprcorr 12852 8.069769 12853 8.081667 12854 8.069911 [1] 1.180380 1.180405 1.180431 [,1] [,2] [,3] [1,] 1.180391 1 1 [2,] 1.180399 -1 1 [3,] 1.180405 -1 6 [4,] 1.180411 -1 6 [5,] 1.180416 -1 6 [6,] 1.180425 1 6 [7,] 1.180431 1 6 [8,] 1.180436 1 6 [9,] 1.180442 1 6 [10,] 1.180450 -1 6 [11,] 1.180456 -1 6 [12,] 1.180462 -1 6 [13,] 1.180467 -1 6 [1] "JOGAVES DOES NOT MATCH" [1] "MASKING 20 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 12:26:57 PM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "RECALC TIME MATCHES" [1] "Tue May 13 12:26:57 PM MDT 2025 done recreating mr o2diffs" [1] "Removed 2 medium-rate record(s) with accumulation errors" [1] "Screening 1 LiH2O values less than -1" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 121.023 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 95.236 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 95.432 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -27.863 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 20 [1] 165 [1] 192 [1] 192 [1] 192 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 1 176.8390 2295.4969 1013522.2 1 [2,] 2 176.8390 2170.6991 1015891.6 -1 [3,] 3 176.8390 2141.4898 1013723.9 1 [4,] 78 176.8413 2016.6269 1015659.5 -1 [5,] 79 176.8414 1313.9700 1013652.5 1 [6,] 80 176.8414 716.2161 1014349.4 -1 [7,] 152 176.8436 670.8878 1014396.6 -1 [8,] 153 176.8436 1573.8863 1013684.1 1 [9,] 154 176.8436 2474.8462 1016214.3 -1 [10,] 226 176.8458 2580.0746 1016631.2 -1 [11,] 227 176.8458 1924.7315 1014015.9 1 [12,] 228 176.8458 1191.9423 1015270.0 -1 [13,] 300 176.8480 1190.9529 1015567.7 -1 [14,] 301 176.8480 2210.6091 1014336.4 1 [15,] 302 176.8480 3272.5550 1017704.5 -1 [16,] 370 176.8500 3409.7539 1017990.0 -1 [17,] 371 176.8501 3044.2856 1014512.2 1 [18,] 372 176.8501 2689.3203 1017260.9 -1 [19,] 438 176.8518 2611.9449 1017133.5 -1 [20,] 439 176.8518 1853.6605 1014469.1 1 [21,] 440 176.8519 1060.1526 1015500.5 -1 [22,] 442 176.8519 710.2983 1015171.8 -1 [23,] 506 176.8535 598.8246 1014997.4 -1 [24,] 507 176.8536 673.8839 1014386.3 1 [25,] 508 176.8536 1139.9544 1015632.1 -1 [26,] 509 176.8536 2223.9709 1014394.8 1 [27,] 510 176.8537 3218.0026 1017717.1 -1 [28,] 772 176.8604 3539.8877 1019424.1 -1 [29,] 773 176.8605 3540.7349 1015806.1 1 [30,] 774 176.8605 3082.7690 1018893.6 -1 [31,] 775 176.8605 1987.5780 1015794.0 1 [32,] 776 176.8605 889.0813 1016710.5 -1 [33,] 854 176.8626 609.0074 1017139.4 -1 [34,] 855 176.8626 1242.6686 1016525.4 1 [35,] 856 176.8626 1989.3566 1018643.6 -1 [36,] 857 176.8626 2374.2377 1016569.0 1 [37,] 858 176.8627 2498.0411 1019150.3 -1 [38,] 938 176.8647 2203.7484 1020076.9 -1 [39,] 1016 176.8667 2141.2629 1020847.2 -1 [40,] 1017 176.8667 2600.6261 1018655.2 1 [41,] 1018 176.8668 3120.4792 1021911.2 -1 [42,] 1020 176.8668 3475.9954 1022243.5 -1 [43,] 1178 176.8710 3335.9532 1022004.3 -1 [44,] 1179 176.8711 3005.2484 1018591.4 1 [45,] 1180 176.8711 2693.4027 1021355.6 -1 [46,] 1258 176.8733 2445.4080 1020691.2 -1 [47,] 1259 176.8733 1585.1204 1018216.7 1 [48,] 1260 176.8734 772.1393 1018993.2 -1 [49,] 1340 176.8757 819.0453 1018628.2 -1 [50,] 1420 176.8780 1108.6501 1018457.0 -1 [51,] 1421 176.8781 2149.4384 1017304.5 1 [52,] 1422 176.8781 3228.7881 1020644.1 -1 [53,] 1424 176.8782 3494.7713 1020899.5 -1 [54,] 1703 176.8864 3580.7916 1014662.1 1 [55,] 1704 176.8865 3632.0495 1018301.8 -1 [56,] 1705 176.8866 3867.2908 1014320.4 1 [57,] 1706 176.8866 3724.8449 1018254.1 -1 [58,] 1707 176.8866 3586.8744 1014568.4 1 [59,] 2001 176.8956 3549.8870 1019812.8 1 [60,] 2002 176.8957 3480.4596 1023259.3 -1 [61,] 2003 176.8957 3477.3286 1019438.4 1 [62,] 2004 176.8957 3509.6291 1022970.9 -1 [63,] 2006 176.8958 3514.7586 1022927.5 -1 [64,] 2007 176.8958 2846.1118 1019309.9 1 [65,] 2008 176.8958 1971.8528 1021399.3 -1 [66,] 2009 176.8959 1511.9653 1019399.8 1 [67,] 2010 176.8959 1516.4288 1020852.0 -1 [68,] 2337 176.9056 1371.7914 1018744.9 -1 [69,] 2341 176.9057 1352.8995 1018634.6 -1 [70,] 2342 176.9058 1021.6185 1017225.8 1 [71,] 2343 176.9058 718.8451 1017930.3 -1 [72,] 2413 176.9077 1040.8416 1017123.1 -1 [73,] 2414 176.9077 1784.5909 1015988.4 1 [74,] 2415 176.9077 2490.6333 1018535.1 -1 [75,] 2483 176.9097 2444.1099 1017143.9 -1 [76,] 2484 176.9097 1926.0033 1014646.4 1 [77,] 2485 176.9097 1432.5433 1016112.7 -1 [78,] 3555 176.9404 1324.2347 1003269.7 -1 [79,] 3557 176.9404 1320.4836 1003246.5 -1 [80,] 3558 176.9405 1647.2950 1001903.8 1 [81,] 3559 176.9405 2091.0540 1004043.3 -1 [82,] 3561 176.9406 2559.1085 1004415.5 -1 [83,] 3629 176.9426 2516.7784 1003666.1 -1 [84,] 3630 176.9426 1646.5103 1001133.4 1 [85,] 3631 176.9426 770.3557 1001881.1 -1 [86,] 4887 176.9751 1285.2120 991203.8 -1 [87,] 4891 176.9752 1232.5221 991189.9 -1 [88,] 4892 176.9752 930.5910 989958.6 1 [89,] 4893 176.9753 640.1948 990584.6 -1 [90,] 4973 176.9773 836.3540 992352.0 -1 [91,] 4974 176.9773 1620.9746 991505.5 1 [92,] 4975 176.9774 2405.2066 993945.8 -1 [93,] 5055 176.9794 2388.8918 996058.9 -1 [94,] 5056 176.9794 1813.2709 993721.9 1 [95,] 5057 176.9794 1252.8282 994983.4 -1 [96,] 5135 176.9815 993.8400 996444.0 -1 [97,] 5136 176.9815 1228.4845 995465.4 1 [98,] 5137 176.9815 1556.8501 997089.4 -1 [99,] 5138 176.9816 1868.5467 995512.6 1 [100,] 5139 176.9816 2063.1634 997600.0 -1 [101,] 5217 176.9839 2047.4855 999055.6 -1 [102,] 5218 176.9839 1779.1012 997005.9 1 [103,] 5219 176.9839 1514.0484 998515.1 -1 [104,] 6219 177.0099 1244.3640 997635.2 -1 [105,] 6223 177.0100 1219.3931 997702.1 -1 [106,] 6224 177.0101 1664.0796 996496.4 1 [107,] 6225 177.0101 2158.2553 998702.9 -1 [108,] 6227 177.0101 2444.2368 998971.1 -1 [109,] 6309 177.0123 2373.7768 1000389.1 -1 [110,] 6310 177.0123 1590.5195 998056.5 1 [111,] 6311 177.0123 795.1905 998852.8 -1 [112,] 6393 177.0144 605.6626 999658.8 -1 [113,] 6394 177.0144 860.8754 999061.5 1 [114,] 6395 177.0145 1140.8498 1000250.8 -1 [115,] 7547 177.0447 1334.3107 1002715.8 -1 [116,] 7551 177.0448 1305.7214 1002673.0 -1 [117,] 7552 177.0448 1008.2120 1001356.5 1 [118,] 7553 177.0448 696.7541 1002047.8 -1 [119,] 7633 177.0469 796.2977 1001861.8 -1 [120,] 7634 177.0469 1618.6638 1001026.4 1 [121,] 7635 177.0469 2414.7060 1003466.2 -1 [122,] 7715 177.0490 2377.2317 1002788.9 -1 [123,] 7716 177.0490 1897.7387 1000448.4 1 [124,] 7717 177.0490 1463.5828 1001921.1 -1 [125,] 8903 177.0794 1328.5014 1001689.8 -1 [126,] 8907 177.0795 1285.7096 1001667.8 -1 [127,] 8908 177.0795 1706.2502 1000355.0 1 [128,] 8909 177.0795 2206.5474 1002621.5 -1 [129,] 8911 177.0796 2534.1064 1002886.5 -1 [130,] 8989 177.0816 2604.5584 1003063.8 -1 [131,] 8990 177.0816 2020.7607 1000445.3 1 [132,] 8991 177.0816 1280.4116 1001659.3 -1 [133,] 8992 177.0817 872.0427 1000445.2 1 [134,] 8993 177.0817 721.0349 1001152.1 -1 [135,] 9073 177.0837 933.9823 1001699.2 -1 [136,] 10261 177.1141 1301.5058 994187.5 -1 [137,] 10265 177.1142 1221.8203 994176.1 -1 [138,] 10266 177.1142 1019.2590 992942.4 1 [139,] 10267 177.1143 771.0955 993654.6 -1 [140,] 10269 177.1143 526.0056 993369.3 -1 [141,] 10347 177.1163 474.1901 992520.2 -1 [142,] 10348 177.1163 1117.2581 992047.9 1 [143,] 10349 177.1164 1850.2876 993954.2 -1 [144,] 10351 177.1164 2381.3126 994413.8 -1 [145,] 10431 177.1184 2191.3455 993380.4 -1 [146,] 10511 177.1205 2114.9539 992652.6 -1 [147,] 10512 177.1205 1884.4920 990551.9 1 [148,] 10513 177.1205 1554.5175 992092.3 -1 [149,] 10566 177.1219 1324.6340 990088.0 1 [150,] 10567 177.1219 1269.0424 991476.6 -1 [151,] 10568 177.1219 1236.2567 990298.7 1 [152,] 11598 177.1483 1288.4370 983622.4 1 [153,] 11599 177.1484 1212.9835 984956.1 -1 [154,] 11600 177.1484 1199.7942 983846.4 1 [155,] 11619 177.1489 1276.2158 985013.8 -1 [156,] 11623 177.1490 1276.5875 984996.5 -1 [157,] 11624 177.1490 1672.4643 983719.2 1 [158,] 11625 177.1490 2125.9845 985850.4 -1 [159,] 11627 177.1491 2484.4054 986119.4 -1 [160,] 11705 177.1511 2531.4737 985909.8 -1 [161,] 11706 177.1511 1902.5905 983411.5 1 [162,] 11707 177.1511 1187.8476 984510.6 -1 [163,] 11709 177.1512 638.6094 984010.8 -1 [164,] 11787 177.1531 530.5889 983973.7 -1 [165,] 11788 177.1532 784.3352 983472.3 1 [166,] 11789 177.1532 1053.4466 984558.6 -1 [167,] 12806 177.1793 1572.4646 991463.7 1 [168,] 12807 177.1793 1482.8981 993275.7 -1 [169,] 12808 177.1793 1338.0372 992026.7 1 [170,] 12851 177.1804 1463.5230 993730.3 -1 [171,] 12855 177.1805 1714.9594 994020.0 -1 [172,] 12856 177.1805 2176.4515 992273.5 1 [173,] 12857 177.1806 2850.9825 995170.6 -1 [174,] 12858 177.1806 3578.2192 992226.8 1 [175,] 12859 177.1807 3702.6194 995931.8 -1 [176,] 12861 177.1807 3874.1472 996132.6 -1 [177,] 12941 177.1831 3486.2199 996780.1 -1 [178,] 12942 177.1831 2211.9180 993311.6 1 [179,] 12943 177.1831 885.1652 994163.4 -1 [180,] 12945 177.1832 623.2989 993940.2 -1 [181,] 13017 177.1853 514.5237 994693.5 -1 [182,] 13018 177.1853 959.8824 994188.9 1 [183,] 13019 177.1854 1583.6734 995876.0 -1 [184,] 13020 177.1854 2114.6031 994218.9 1 [185,] 13021 177.1854 2435.1465 996668.3 -1 [186,] 13095 177.1876 2468.9578 997139.1 -1 [187,] 13096 177.1876 1866.9466 994692.3 1 [188,] 13097 177.1876 1130.7080 995823.0 -1 [189,] 13165 177.1897 964.5982 995934.8 -1 [190,] 13166 177.1897 1562.7043 994977.7 1 [191,] 13167 177.1898 2126.7551 997154.2 -1 [192,] 13169 177.1898 2474.4088 997486.6 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 6922 177.0287 1.274662e+03 [2,] 7135 177.0342 9.780965e+09 [3,] 9216 177.0874 2.942480e+02 [4,] 12404 177.1690 2.958120e+02 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 121.023 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 64.205 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 64.062 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -27.863 PER MEG" [1] 176.9439 176.9605 [1] "Screened 622 sample O2 values from screensampo2 period 176.943914 to 176.960546" [1] 176.9835 176.9972 [1] "Screened 514 sample O2 values from screensampo2 period 176.983494 to 176.997178" [1] 177.0138 177.0365 [1] "Screened 840 sample O2 values from screensampo2 period 177.01381 to 177.036548" [1] 177.0898 177.1149 [1] "Screened 949 sample O2 values from screensampo2 period 177.089812 to 177.114865" [1] 177.1123 177.1231 [1] "Screened 176 sample O2 values from screensampo2 period 177.112339 to 177.123076" [1] 177.1728 177.1789 [1] "Screened 238 sample O2 values from screensampo2 period 177.172761 to 177.178866" [1] 177.0094 177.0119 [1] "Screened 97 O2 values from screeno2 period 177.009389 to 177.011916" [1] 177.0475 177.0485 [1] "Screened 41 O2 values from screeno2 period 177.047495 to 177.048548" [1] 176.9578 176.9620 [1] "Screened 164 sample O2 values from screensampo2 period 176.957809 to 176.96202" [1] 176.9940 176.9999 [1] "Screened 227 sample O2 values from screensampo2 period 176.99402 to 176.999915" [1] 359.0019 392.2379 380.4640 381.1763 421.9671 [1] -354.0467 -933.6388 -460.5297 -811.9571 -1174.5777 [1] "Nominal linear calibrations:" [1] "co2scl = 0.981 co2off = 5.21 o2scla = -0.051 o2offa = -27.6" [1] "(dV/V)/(dXO2/XO2) = -4.14" [1] "(dV/V)/d(O2/N2) = -3.273" [1] "Finding cal and sample periods" [1] "Median Cal: 2.98 minutes" [1] "Average Cal: 2.95 minutes" [1] "Shortest Cal: 0.57 minutes" [1] "Longest Cal: 5 minutes" [1] "Removed 3 calibration period(s) with less than 30 seconds of data" [1] "at: 14" [1] "at: 23" [1] "at: 48" [1] "Reading in aircraft data" [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.00655" [1] "HS CO2 vs. PACAB: m = -0.00776, r^2 = 0.22" [1] "LS CO2 vs. PACAB: m = -0.00534, r^2 = 0.23" [1] "HS+LS LIH2O vs. PACAB: m = -2.07e-05" [1] "HS LIH2O vs. PACAB: m = 3.07e-07, r^2 = 0" [1] "LS LIH2O vs. PACAB: m = -4.16e-05, r^2 = 0.06" [1] "HS+LS CO2 vs. LIH2O: m = 15.5" [1] "HS CO2 vs. LIH2O: m = 6.59, r^2 = 0.02" [1] "LS CO2 vs. LIH2O: m = 24.4, r^2 = 0.32" [1] "APCO2 vs. PACAB: m = 0.0012, r^2 = 0" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = -0.218" [1] "HS O2 vs. PACAB: m = -0.0234, r^2 = 0" [1] "LS O2 vs. PACAB: m = -0.413, r^2 = 0.08" [1] "HS+LS O2 vs. LIH2O: m = 393" [1] "HS O2 vs. LIH2O: m = 236, r^2 = 0" [1] "LS O2 vs. LIH2O: m = 549, r^2 = 0.01" [1] "HS+LS O2 vs. PAO2: m = -26.4" [1] "HS O2 vs. PAO2: m = -23.3, r^2 = 0.07" [1] "LS O2 vs. PAO2: m = -29.4, r^2 = 0.1" [1] "HS+LS O2 vs. TPBOX: m = -1.67" [1] "HS O2 vs. TPBOX: m = -1.98, r^2 = 0.03" [1] "LS O2 vs. TPBOX: m = -1.35, r^2 = 0.02" [1] "APO vs. PACAB: m = -0.0202, r^2 = 0" [1] "APO vs. PAO2: m = -47.6, r^2 = 0.46" [1] "APO vs. TPBOX: m = 9.81, r^2 = 0.31" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = -0.301, r^2 = 0" [1] "LS CO2 vs. LiCor Cell P: m = 0.471, r^2 = 0.02" [1] "HS CO2 vs. CO2 Vol P: m = 0.143, r^2 = 0.06" [1] "LS CO2 vs. CO2 Vol P: m = 0.148, r^2 = 0.12" [1] "HS CO2 vs. SLOPE: m = -0.276, r^2 = 0.09" [1] "LS CO2 vs. SLOPE: m = 0.14, r^2 = 0.05" [1] "HS O2 vs. O2 Vol P: m = -21.6, r^2 = 0.03" [1] "LS O2 vs. O2 Vol P: m = -15.4, r^2 = 0.01" [1] "HS O2 vs. O2 Cell T: m = 13.7, r^2 = 0.04" [1] "LS O2 vs. O2 Cell T: m = 2.87, r^2 = 0" [1] "HS O2 vs. CO2 Vol P: m = -16.6, r^2 = 0.03" [1] "LS O2 vs. CO2 Vol P: m = -15.6, r^2 = 0.02" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = -3.65, r^2 = 0.02" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = 1, r^2 = 0" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -16.6, r^2 = 0.03" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -15.6, r^2 = 0.02" [1] "HS O2 vs. LIH2O: m = 686, r^2 = 0.01" [1] "LS O2 vs. LIH2O: m = 1420, r^2 = 0.02" [1] "HS O2 vs. SLOPE: m = -0.158, r^2 = 0" [1] "LS O2 vs. SLOPE: m = -1.15, r^2 = 0.02" [1] "HS CO2 vs. Time: m = 16.927, r^2 = 0.94" [1] "LS CO2 vs. Time: m = 17.284, r^2 = 0.93" [1] "HS CO2 vs. Cylinder T: m = -0.343, r^2 = 0.12" [1] "LS CO2 vs. Cylinder T: m = -0.015, r^2 = 0" [1] "HS CO2 vs. Regulator T: m = -0.233, r^2 = 0.25" [1] "LS CO2 vs. Regulator T: m = -0.131, r^2 = 0.125" [1] "HS CO2 vs. Ref. Volumes T: m = -0.175, r^2 = 0.06" [1] "LS CO2 vs. Ref. Volumes T: m = -0.005, r^2 = 0" [1] "HS CO2 vs. Manifold T: m = -0.216, r^2 = 0.36" [1] "LS CO2 vs. Manifold T: m = -0.131, r^2 = 0.215" [1] "HS CO2 vs. Pump Box T: m = -0.027, r^2 = 0.08" [1] "LS CO2 vs. Pump Box T: m = -0.017, r^2 = 0.057" [1] "HS O2 vs. Cylinder T: m = 9.371, r^2 = 0" [1] "LS O2 vs. Cylinder T: m = -10.195, r^2 = 0.004" [1] "HS O2 vs. Regulator T: m = -0.92, r^2 = 0" [1] "LS O2 vs. Regulator T: m = -3.204, r^2 = 0.001" [1] "HS O2 vs. Ref. Volumes T: m = -6.899, r^2 = 0" [1] "LS O2 vs. Ref. Volumes T: m = -13.229, r^2 = 0.013" [1] "HS O2 vs. Manifold T: m = 11.859, r^2 = 0.04" [1] "LS O2 vs. Manifold T: m = 4.065, r^2 = 0.004" [1] "HS O2 vs. Pump Box T: m = -2.374, r^2 = 0.02" [1] "LS O2 vs. Pump Box T: m = -1.46, r^2 = 0.008" [1] "HS CO2 vs. WT P: m = -0.004, r^2 = 0.11" [1] "LS CO2 vs. WT P: m = -0.005, r^2 = 0.32" [1] "HS CO2 vs. SP P: m = -0.0047, r^2 = 0.13" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.051, r^2 = 0.43" [1] "HS CO2 vs. SP P comb with PACAB: m = -0.059, r^2 = 0.43" [1] "LS CO2 vs. SP P: m = -0.00565, r^2 = 0.46" [1] "LS CO2 vs. PACAB comb with SP P: m = 0.008, r^2 = 0.33" [1] "LS CO2 vs. SP P comb with PACAB: m = -0.014, r^2 = 0.33" [1] "HS CO2 vs. WT FL: m = -0.094, r^2 = 0.14" [1] "LS CO2 vs. WT FL: m = -0.041, r^2 = 0.045" [1] "HS CO2 vs. SP FL: m = 0.025, r^2 = 0.01" [1] "LS CO2 vs. SP FL: m = 0.042, r^2 = 0.053" [1] "HS O2 vs. SLPDIFF: m = 0.028, r^2 = 0" [1] "LS O2 vs. SLPDIFF: m = -0.711, r^2 = 0.012" [1] "HS O2 vs. WT P: m = 0.641, r^2 = 0.08" [1] "LS O2 vs. WT P: m = 0.232, r^2 = 0.011" [1] "HS O2 vs. SP P: m = 0.565, r^2 = 0.04" [1] "LS O2 vs. SP P: m = 0.13, r^2 = 0.003" [1] "HS O2 vs. WT FL: m = -2.01, r^2 = 0" [1] "LS O2 vs. WT FL: m = -7.61, r^2 = 0.029" [1] "HS O2 vs. SP FL: m = -13.213, r^2 = 0.08" [1] "LS O2 vs. SP FL: m = -4.141, r^2 = 0.01" [1] "Plotting calibration shapes" [1] "Empirical LP O2 lag time(s): 5.62, 19.53" [1] "Empirical LP O2 lag flow(s): 103.9, 98" [1] "Empirical LP CO2 lag time(s): 5.62, 14.34" [1] "Empirical LP CO2 lag flow(s): 103.9, 98" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.74" [1] "Median all HS CO2 SD = 0.73" [1] "Median all LS CO2 SD = 0.73" [1] "Median all LT CO2 SD = 0.69" [1] "Median all WT CO2 SD = 0.71" [1] "Median all HS or LS CO2 SD = 0.73" [1] "Median all cal O2 SD = 4.13" [1] "Median all HS O2 SD = 3.25" [1] "Median all LS O2 SD = 3.37" [1] "Median all LT O2 SD = 4.26" [1] "Median all WT O2 SD = 8.59" [1] "Median all HS or LS O2 SD = 3.31" [1] "Median all cal CO2 Slope = 0" [1] "Median all HS CO2 Slope = -0.03" [1] "Median all LS CO2 Slope = -0.07" [1] "Median all LT CO2 Slope = 0.18" [1] "Median all WT CO2 Slope = -0.1" [1] "Median all HS or LS CO2 Slope = -0.04" [1] "Median all cal O2 Slope = 0.48" [1] "Median all HS O2 Slope = 0" [1] "Median all LS O2 Slope = 0.61" [1] "Median all LT O2 Slope = 2.56" [1] "Median all WT O2 Slope = -2.27" [1] "Median all HS or LS O2 Slope = 0.39" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 13.33 per meg" [1] "Initial O2 Calibration Offset = -6.94 per meg" [1] "SD of O2 Calibration (post-takeoff) = 14.79 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = -9.29 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = -3 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using HIPPO4-5 inlet volumes" [1] "before any lag: 72487.79 102816.43" [1] "Time lag adjustments = 5 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 40.3 at 101.7 sccm" [1] "Median O2 delay + tlagff = 41.1 at 101.7 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 37.7 at 101.7 sccm" [1] "Median O2 delay from 3-way + tlagff = 38.5 at 101.7 sccm" [1] "after calc and ff lag: 72446.73 102773.32" [1] "2025-05-13 12:27:41 MDT" [1] "Calculating 1-sec interpolated values" [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item Read 24556 records [1] 5 2453 24556 [1] "done reading AO2" [1] 2011 2011 2011 2011 2011 2011 [1] 158 158 158 158 158 158 [1] 61512 61520 61530 61540 61550 61560 [1] "2011-06-07 17:05:12 UTC" "2011-06-07 17:05:20 UTC" [3] "2011-06-07 17:05:30 UTC" "2011-06-07 17:05:40 UTC" [5] "2011-06-07 17:05:50 UTC" "2011-06-07 17:06:00 UTC" [1] NA NA NA NA NA NA [1] 26648 [1] "Average Date / Time for slice RF05 = 2011-06-26 00:54:27.8859858512878" [1] "sum(lsel) = 1263" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 4.643433 812.307053 [1] 4.643433 812.307053 [1] 187.6929 995.3566 [1] 4.440892e-16 9.999990e+05 [1] "highestmid = 670.725891" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO4 RF05 APO_AO2 range = -369.64,-317.39" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 24556 records [1] 5 2453 24556 [1] "done reading AO2" [1] 2011 2011 2011 2011 2011 2011 [1] 158 158 158 158 158 158 [1] 61512 61520 61530 61540 61550 61560 [1] "2011-06-07 17:05:12 UTC" "2011-06-07 17:05:20 UTC" [3] "2011-06-07 17:05:30 UTC" "2011-06-07 17:05:40 UTC" [5] "2011-06-07 17:05:50 UTC" "2011-06-07 17:06:00 UTC" [1] NA NA NA NA NA NA [1] 26661 [1] "Average Date / Time for slice RF05 = 2011-06-26 00:54:18.2041139602661" [1] "sum(lsel) = 1264" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 4.643433 812.307053 [1] 4.643433 812.307053 [1] 187.6929 995.3566 [1] 4.440892e-16 9.999990e+05 [1] "highestmid = 670.725891" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO4 RF05 O2_AO2 range = -571.05,-529.21" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 24556 records [1] 5 2453 24556 [1] "done reading AO2" [1] 2011 2011 2011 2011 2011 2011 [1] 158 158 158 158 158 158 [1] 61512 61520 61530 61540 61550 61560 [1] "2011-06-07 17:05:12 UTC" "2011-06-07 17:05:20 UTC" [3] "2011-06-07 17:05:30 UTC" "2011-06-07 17:05:40 UTC" [5] "2011-06-07 17:05:50 UTC" "2011-06-07 17:06:00 UTC" [1] NA NA NA NA NA NA [1] 27570 [1] "Average Date / Time for slice RF05 = 2011-06-26 00:55:42.1683168411255" [1] "sum(lsel) = 2020" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 2.147278 812.307053 [1] 2.147278 812.307053 [1] 187.6929 997.8527 [1] 4.440892e-16 9.999990e+05 [1] "highestmid = 670.725891" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO4 RF05 CO2_AO2 range = 387.67,393.66" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "making html" [1] "making index html"