[1] "2025-05-13 11:56:15 MDT" options [1,] "file" "100329a" [2,] "flight" "RF03" [3,] "project" "HIPPO3" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "0" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "TRUE" [26,] "vxavail" "TRUE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "posttoonly" [48,] "o2caltype" "posttoonly" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "FALSE" [64,] "icartt" "0" [65,] "icarttrev" "0" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "100329a" [1] "Reading in flight and plotting intervals" Read 14 records [1] "Reading in /scr/raf/stephens/AO2DAT/100329a.mr" Read 13374 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.25 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.21 seconds" [1] "New JOGEST = 2.21 seconds" [1] "New VALVE SKIP = 27 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/100329a.hr" Read 53498 records [1] "HR FILE MATCHES" [1] "Converting hrdata statout" [1] "Tue May 13 11:56:15 AM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30069 description: HS CO2 = 337.1 O2 = -401.3" [1] "position 2 cylinder OK30070 description: LS CO2 = 410.3 O2 = -1022" [1] "position 3 cylinder OK170199 description: LT CO2 = 384.92 O2 = -817.8" [1] "position 4 cylinder OK30053 description: WT CO2 = 374.85 O2 = -621.2" [1] "position 5 cylinder OK30055 description: LP CO2 = 343.66 O2 = -461.9" [1] 337.1029 410.3028 384.9180 374.8451 343.6586 [1] -401.2871 -1022.0146 -817.7822 -621.1550 -461.9028 [1] "Nominal linear calibrations:" [1] "co2scl = 0.965 co2off = 25.89 o2scla = -0.048 o2offa = -21.6" [1] "(dV/V)/(dXO2/XO2) = -4.346" [1] "(dV/V)/d(O2/N2) = -3.436" [1] "Reading in very high resolution timeseries" Read 267480 records [1] 267480 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 11:56:15 AM MDT 2025 done approxing mr variables" [1] "Tue May 13 11:56:17 AM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.436" [1] "o2scaleavenew_drelVdrelP = -4.346" [1] "median(o2scalenew) = -3.439" [1] "Empirical dV/V vs dP/P relationship =-3.624, r^2 =0.312, damping =0.834" [1] "Tue May 13 11:56:17 AM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "MASKING 20 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 11:56:54 AM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "RECALC TIME MATCHES" [1] "Tue May 13 11:56:54 AM MDT 2025 done recreating mr o2diffs" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 385.277 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 121.871 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 119.279 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 18.065 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 30 [1] 136 [1] 153 [1] 153 [1] 153 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 69 88.74544 1736.0783 989052.6 -1 [2,] 70 88.74547 1433.9231 987319.0 1 [3,] 71 88.74549 1109.8830 988394.1 -1 [4,] 106 88.74655 867.8982 987183.2 1 [5,] 107 88.74658 957.3678 987948.0 -1 [6,] 108 88.74661 981.5539 986874.5 1 [7,] 133 88.74734 1057.2331 987775.9 -1 [8,] 134 88.74737 2079.9661 986676.7 1 [9,] 135 88.74740 3069.6690 989743.4 -1 [10,] 197 88.74920 3244.0504 989767.0 -1 [11,] 198 88.74923 2912.7948 986536.9 1 [12,] 199 88.74926 2557.1392 989076.7 -1 [13,] 242 88.75050 2435.4541 985799.9 1 [14,] 243 88.75053 2379.7681 988317.0 -1 [15,] 244 88.75056 2374.4403 986050.4 1 [16,] 261 88.75105 2397.8367 988150.1 -1 [17,] 262 88.75108 2093.5544 985809.3 1 [18,] 263 88.75111 1733.3348 987530.5 -1 [19,] 274 88.75145 1515.8575 985395.1 1 [20,] 275 88.75147 1561.9111 986759.1 -1 [21,] 276 88.75150 1648.3086 985068.6 1 [22,] 342 88.75343 1685.8252 983577.2 1 [23,] 343 88.75346 1762.4898 985225.4 -1 [24,] 344 88.75349 1798.2162 983334.8 1 [25,] 1185 88.77812 1339.3788 969102.9 -1 [26,] 1187 88.77818 1370.5929 969149.4 -1 [27,] 1188 88.77821 1859.7144 967783.5 1 [28,] 1189 88.77824 2516.0235 970338.1 -1 [29,] 1190 88.77827 3027.3636 967806.8 1 [30,] 1191 88.77830 3334.3557 971037.3 -1 [31,] 1247 88.77993 3298.1752 970852.0 -1 [32,] 1248 88.77996 2148.8043 967591.8 1 [33,] 1249 88.77999 1154.3322 968747.4 -1 [34,] 2603 88.81593 1679.2293 957847.1 -1 [35,] 2605 88.81599 1677.8861 957790.4 -1 [36,] 2606 88.81602 1454.2976 956105.9 1 [37,] 2607 88.81606 1192.5648 957203.1 -1 [38,] 2609 88.81612 996.9251 956931.2 -1 [39,] 2671 88.81800 826.5162 954789.2 -1 [40,] 2672 88.81804 1540.8037 953967.8 1 [41,] 2673 88.81807 2382.3465 956307.1 -1 [42,] 2674 88.81810 2915.7531 953890.1 1 [43,] 2675 88.81813 3140.1541 956887.6 -1 [44,] 2737 88.82001 3214.2861 954850.1 -1 [45,] 2738 88.82004 2735.3246 951741.5 1 [46,] 2739 88.82008 2144.1822 953722.6 -1 [47,] 3364 88.83682 1575.0823 956638.9 1 [48,] 3365 88.83685 1554.1674 958246.7 -1 [49,] 3366 88.83688 1569.2904 956870.8 1 [50,] 3885 88.85063 1597.1784 963004.2 -1 [51,] 3889 88.85073 1877.5418 963307.7 -1 [52,] 3890 88.85076 2515.4528 961425.5 1 [53,] 3891 88.85078 3126.3291 964452.9 -1 [54,] 3955 88.85244 2842.0468 963818.2 -1 [55,] 3956 88.85246 1904.3256 961103.0 1 [56,] 3957 88.85249 1024.0160 962072.3 -1 [57,] 4021 88.85414 1071.9475 961874.0 -1 [58,] 4022 88.85417 1664.8547 960788.4 1 [59,] 4023 88.85419 2230.0963 962961.8 -1 [60,] 4087 88.85584 2055.3158 962911.2 -1 [61,] 4088 88.85587 1702.9018 960968.0 1 [62,] 4089 88.85589 1396.5048 962343.0 -1 [63,] 4302 88.86134 1543.1266 963792.6 1 [64,] 4303 88.86137 1507.6621 965359.2 -1 [65,] 4304 88.86139 1552.6522 963996.9 1 [66,] 4700 88.87152 1600.3654 973981.5 1 [67,] 4701 88.87154 1522.2610 975615.7 -1 [68,] 4702 88.87157 1523.4958 974213.3 1 [69,] 5241 88.88533 1247.4489 984169.5 -1 [70,] 5247 88.88549 880.3288 983836.1 -1 [71,] 5311 88.88712 817.3968 984458.6 -1 [72,] 5312 88.88714 921.4328 983669.7 1 [73,] 5313 88.88717 1354.0252 985116.8 -1 [74,] 5314 88.88719 2230.3123 983724.7 1 [75,] 5315 88.88722 3008.6963 986723.3 -1 [76,] 5381 88.88889 2946.1078 987489.6 -1 [77,] 5382 88.88891 2393.7240 984618.7 1 [78,] 5383 88.88894 1837.6065 986447.7 -1 [79,] 6567 88.92007 1483.1435 997069.6 -1 [80,] 6569 88.92013 1463.0111 997112.4 -1 [81,] 6570 88.92016 1951.0849 995654.1 1 [82,] 6571 88.92019 2574.5727 998328.2 -1 [83,] 6572 88.92022 2979.9922 995680.3 1 [84,] 6573 88.92025 3147.1709 998881.9 -1 [85,] 6629 88.92191 3083.2924 1000586.3 -1 [86,] 6630 88.92194 2047.0084 997534.4 1 [87,] 6631 88.92197 1037.9446 998590.2 -1 [88,] 6687 88.92362 809.0376 1000068.0 -1 [89,] 6688 88.92365 1015.1304 999294.6 1 [90,] 6689 88.92368 1256.0337 1000644.9 -1 [91,] 7793 88.95478 1414.5018 1009983.5 -1 [92,] 7799 88.95493 900.7604 1009566.3 -1 [93,] 7865 88.95661 977.7464 1010971.9 -1 [94,] 7866 88.95664 1880.1482 1009965.4 1 [95,] 7867 88.95667 2967.7358 1013045.2 -1 [96,] 7933 88.95834 3115.3675 1014245.4 -1 [97,] 7934 88.95837 2802.8231 1011093.6 1 [98,] 7935 88.95839 2485.2473 1013622.7 -1 [99,] 8001 88.96006 2309.3811 1014380.2 -1 [100,] 8002 88.96009 2025.4402 1012068.9 1 [101,] 8003 88.96011 1735.1910 1013844.8 -1 [102,] 8928 88.98377 1455.1363 1012746.8 1 [103,] 8929 88.98380 1446.6242 1014379.9 -1 [104,] 8930 88.98382 1374.9102 1012979.9 1 [105,] 9153 88.98950 1589.5670 1018848.3 -1 [106,] 9157 88.98960 1783.2788 1019152.1 -1 [107,] 9158 88.98963 2418.7124 1017307.4 1 [108,] 9159 88.98965 3025.0438 1020417.3 -1 [109,] 9225 88.99133 3063.4272 1021335.0 -1 [110,] 9226 88.99136 2091.4993 1018218.6 1 [111,] 9227 88.99138 1123.2720 1019329.6 -1 [112,] 9293 88.99305 894.8670 1019394.8 -1 [113,] 9294 88.99308 1196.9702 1018473.2 1 [114,] 9295 88.99311 1458.1925 1020006.0 -1 [115,] 10356 89.02023 1560.6847 1022757.5 1 [116,] 10357 89.02026 1506.7246 1024439.5 -1 [117,] 10358 89.02028 1429.9997 1022977.6 1 [118,] 10513 89.02423 1380.8188 1025278.6 -1 [119,] 10519 89.02438 880.2894 1024709.1 -1 [120,] 10585 89.02606 986.8856 1024303.0 -1 [121,] 10586 89.02608 1935.0030 1023250.0 1 [122,] 10587 89.02611 2913.4445 1026273.2 -1 [123,] 10653 89.02778 3009.1378 1025721.6 -1 [124,] 10654 89.02781 2453.4627 1022629.9 1 [125,] 10655 89.02783 1886.5717 1024549.7 -1 [126,] 11873 89.05894 1290.3394 1027797.2 -1 [127,] 11877 89.05904 1441.2102 1028030.8 -1 [128,] 11878 89.05907 2203.8612 1026520.3 1 [129,] 11879 89.05909 2999.4989 1029631.7 -1 [130,] 11943 89.06098 3211.5391 1030739.8 -1 [131,] 11944 89.06101 2227.8281 1027443.8 1 [132,] 11945 89.06104 1170.7860 1028632.3 -1 [133,] 11947 89.06110 913.8934 1028426.8 -1 [134,] 12011 89.06306 812.0820 1029374.9 -1 [135,] 12012 89.06309 1472.7971 1028551.4 1 [136,] 12013 89.06312 2084.3875 1030751.8 -1 [137,] 12015 89.06318 2328.9618 1031022.4 -1 [138,] 12079 89.06512 2395.1604 1032176.9 -1 [139,] 12080 89.06516 1950.3655 1029711.9 1 [140,] 12081 89.06519 1546.0924 1031331.8 -1 [141,] 13101 89.09396 1427.3095 1029401.9 -1 [142,] 13105 89.09408 1016.0062 1028968.6 -1 [143,] 13171 89.09610 918.3823 1028963.0 -1 [144,] 13172 89.09613 1929.4514 1028049.9 1 [145,] 13173 89.09616 2987.7688 1031126.3 -1 [146,] 13192 89.09674 3318.2306 1027931.1 1 [147,] 13193 89.09677 3351.8675 1031491.9 -1 [148,] 13194 89.09681 3274.0317 1028133.6 1 [149,] 13237 89.09812 3254.5899 1031663.5 -1 [150,] 13238 89.09815 2680.5474 1028345.5 1 [151,] 13239 89.09818 1989.4263 1030344.5 -1 [152,] 13240 89.09821 1504.9706 1028372.5 1 [153,] 13241 89.09824 1239.3172 1029665.7 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 4984 88.87878 3.81613e+02 [2,] 5421 88.88990 9.06250e+24 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 385.277 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 121.871 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 119.279 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 17.995 PER MEG" [1] 89.07 367.00 [1] "Screened 1136 O2 values from screenboth period 89.07 to 367" [1] "Screened 1136 CO2 values from screenboth period 89.07 to 367" [1] 337.1029 410.3028 384.9180 374.8451 343.6586 [1] -401.2871 -1022.0146 -817.7822 -621.1550 -461.9028 [1] "Nominal linear calibrations:" [1] "co2scl = 0.964 co2off = 26.24 o2scla = -0.048 o2offa = -22" [1] "(dV/V)/(dXO2/XO2) = -4.342" [1] "(dV/V)/d(O2/N2) = -3.433" [1] "Finding cal and sample periods" [1] "Median Cal: 2.45 minutes" [1] "Average Cal: 2.58 minutes" [1] "Shortest Cal: 2.4 minutes" [1] "Longest Cal: 2.96 minutes" [1] "Removed 2 calibration period(s) with less than 30 seconds of data" [1] "from: 28" [1] "to: 29" [1] "Reading in aircraft data" [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.00665" [1] "HS CO2 vs. PACAB: m = -0.00501, r^2 = 0.68" [1] "LS CO2 vs. PACAB: m = -0.00829, r^2 = 0.86" [1] "HS+LS LIH2O vs. PACAB: m = -0.000151" [1] "HS LIH2O vs. PACAB: m = -0.000149, r^2 = 0.96" [1] "LS LIH2O vs. PACAB: m = -0.000153, r^2 = 0.96" [1] "HS+LS CO2 vs. LIH2O: m = 41.4" [1] "HS CO2 vs. LIH2O: m = 29.4, r^2 = 0.61" [1] "LS CO2 vs. LIH2O: m = 53.3, r^2 = 0.88" [1] "APCO2 vs. PACAB: m = -0.0427, r^2 = 0.07" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = -0.369" [1] "HS O2 vs. PACAB: m = 0.143, r^2 = 0.12" [1] "LS O2 vs. PACAB: m = -0.88, r^2 = 0.4" [1] "HS+LS O2 vs. LIH2O: m = 2170" [1] "HS O2 vs. LIH2O: m = -740, r^2 = 0.09" [1] "LS O2 vs. LIH2O: m = 5090, r^2 = 0.33" [1] "HS+LS O2 vs. PAO2: m = -21.2" [1] "HS O2 vs. PAO2: m = -24.9, r^2 = 0.04" [1] "LS O2 vs. PAO2: m = -17.4, r^2 = 0" [1] "HS+LS O2 vs. TPBOX: m = 7.89" [1] "HS O2 vs. TPBOX: m = -8.32, r^2 = 0.22" [1] "LS O2 vs. TPBOX: m = 24.1, r^2 = 0.3" [1] "APO vs. PACAB: m = 0.743, r^2 = 0.07" [1] "APO vs. PAO2: m = -27.9, r^2 = 0.02" [1] "APO vs. TPBOX: m = 22.9, r^2 = 0.07" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 6.73, r^2 = 0.12" [1] "LS CO2 vs. LiCor Cell P: m = 6.05, r^2 = 0.07" [1] "HS CO2 vs. CO2 Vol P: m = 1.39, r^2 = 0.65" [1] "LS CO2 vs. CO2 Vol P: m = 1.6, r^2 = 0.58" [1] "HS CO2 vs. SLOPE: m = 0.0277, r^2 = 0" [1] "LS CO2 vs. SLOPE: m = -1.5, r^2 = 0.38" [1] "HS O2 vs. O2 Vol P: m = 2.98, r^2 = 0" [1] "LS O2 vs. O2 Vol P: m = 83.1, r^2 = 0.25" [1] "HS O2 vs. O2 Cell T: m = 0.525, r^2 = 0" [1] "LS O2 vs. O2 Cell T: m = -30.6, r^2 = 0.11" [1] "HS O2 vs. CO2 Vol P: m = 17.2, r^2 = 0.1" [1] "LS O2 vs. CO2 Vol P: m = 82.1, r^2 = 0.21" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = -2.84, r^2 = 0.01" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = -0.99, r^2 = 0.01" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = 17.2, r^2 = 0.1" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = 82.1, r^2 = 0.21" [1] "HS O2 vs. LIH2O: m = -461, r^2 = 0.03" [1] "LS O2 vs. LIH2O: m = 7060, r^2 = 0.59" [1] "HS O2 vs. SLOPE: m = -0.853, r^2 = 0.83" [1] "LS O2 vs. SLOPE: m = -2.37, r^2 = 0.95" [1] "HS CO2 vs. Time: m = 16.083, r^2 = 0.87" [1] "LS CO2 vs. Time: m = 16.481, r^2 = 0.84" [1] "HS CO2 vs. Cylinder T: m = -1.907, r^2 = 0.69" [1] "LS CO2 vs. Cylinder T: m = -2.182, r^2 = 0.589" [1] "HS CO2 vs. Regulator T: m = -0.575, r^2 = 0.83" [1] "LS CO2 vs. Regulator T: m = -0.671, r^2 = 0.79" [1] "HS CO2 vs. Ref. Volumes T: m = -1.097, r^2 = 0.12" [1] "LS CO2 vs. Ref. Volumes T: m = -1.735, r^2 = 0.216" [1] "HS CO2 vs. Manifold T: m = -0.579, r^2 = 0.45" [1] "LS CO2 vs. Manifold T: m = -0.653, r^2 = 0.428" [1] "HS CO2 vs. Pump Box T: m = -0.278, r^2 = 0.72" [1] "LS CO2 vs. Pump Box T: m = -0.337, r^2 = 0.608" [1] "HS O2 vs. Cylinder T: m = -1.893, r^2 = 0" [1] "LS O2 vs. Cylinder T: m = -62.553, r^2 = 0.067" [1] "HS O2 vs. Regulator T: m = -6.319, r^2 = 0.1" [1] "LS O2 vs. Regulator T: m = -35.235, r^2 = 0.302" [1] "HS O2 vs. Ref. Volumes T: m = 48.467, r^2 = 0.24" [1] "LS O2 vs. Ref. Volumes T: m = -87.471, r^2 = 0.076" [1] "HS O2 vs. Manifold T: m = -0.464, r^2 = 0" [1] "LS O2 vs. Manifold T: m = -24.772, r^2 = 0.085" [1] "HS O2 vs. Pump Box T: m = -3.147, r^2 = 0.09" [1] "LS O2 vs. Pump Box T: m = -19.05, r^2 = 0.269" [1] "HS CO2 vs. WT P: m = -0.01, r^2 = 0.55" [1] "LS CO2 vs. WT P: m = -0.014, r^2 = 0.648" [1] "HS CO2 vs. SP P: m = -0.00735, r^2 = 0.89" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.082, r^2 = 0.54" [1] "HS CO2 vs. SP P comb with PACAB: m = -0.093, r^2 = 0.54" [1] "LS CO2 vs. SP P: m = -0.0091, r^2 = 0.86" [1] "LS CO2 vs. PACAB comb with SP P: m = -0.111, r^2 = 0.71" [1] "LS CO2 vs. SP P comb with PACAB: m = 0.098, r^2 = 0.71" [1] "HS CO2 vs. WT FL: m = -0.583, r^2 = 0.44" [1] "LS CO2 vs. WT FL: m = -0.763, r^2 = 0.525" [1] "HS CO2 vs. SP FL: m = 0.351, r^2 = 0.47" [1] "LS CO2 vs. SP FL: m = 0.447, r^2 = 0.525" [1] "HS O2 vs. SLPDIFF: m = 1.136, r^2 = 0.47" [1] "LS O2 vs. SLPDIFF: m = 2.589, r^2 = 0.807" [1] "HS O2 vs. WT P: m = 0.066, r^2 = 0.02" [1] "LS O2 vs. WT P: m = -1.105, r^2 = 0.577" [1] "HS O2 vs. SP P: m = 0.083, r^2 = 0.03" [1] "LS O2 vs. SP P: m = -1.163, r^2 = 0.577" [1] "HS O2 vs. WT FL: m = 14.994, r^2 = 0.29" [1] "LS O2 vs. WT FL: m = -36.239, r^2 = 0.164" [1] "HS O2 vs. SP FL: m = 1.202, r^2 = 0.01" [1] "LS O2 vs. SP FL: m = 42.179, r^2 = 0.648" [1] "Plotting calibration shapes" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.68" [1] "Median all HS CO2 SD = 0.68" [1] "Median all LS CO2 SD = 0.65" [1] "Median all LT CO2 SD = 0.81" [1] "Median all WT CO2 SD = 0.64" [1] "Median all HS or LS CO2 SD = 0.68" [1] "Median all cal O2 SD = 3.05" [1] "Median all HS O2 SD = 3.04" [1] "Median all LS O2 SD = 4" [1] "Median all LT O2 SD = 4.77" [1] "Median all WT O2 SD = 2.1" [1] "Median all HS or LS O2 SD = 3.23" [1] "Median all cal CO2 Slope = -0.05" [1] "Median all HS CO2 Slope = -0.01" [1] "Median all LS CO2 Slope = -0.21" [1] "Median all LT CO2 Slope = -0.04" [1] "Median all WT CO2 Slope = -0.15" [1] "Median all HS or LS CO2 Slope = -0.04" [1] "Median all cal O2 Slope = 1.34" [1] "Median all HS O2 Slope = 1.43" [1] "Median all LS O2 Slope = 1.23" [1] "Median all LT O2 Slope = 1.49" [1] "Median all WT O2 Slope = 1.87" [1] "Median all HS or LS O2 Slope = 1.23" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 10.69 per meg" [1] "Initial O2 Calibration Offset = -18.33 per meg" [1] "SD of O2 Calibration (post-takeoff) = 10.16 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = -18.38 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = -18.38 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using HIPPO3 inlet volumes" [1] "before any lag: 64228.81 95241.4" [1] "Time lag adjustments = 0 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 50.5 at 102.5 sccm" [1] "Median O2 delay + tlagff = 51.4 at 102.5 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 49 at 102.5 sccm" [1] "Median O2 delay from 3-way + tlagff = 49.9 at 102.5 sccm" [1] "after calc and ff lag: 64177.57 95188.07" [1] "2025-05-13 11:57:41 MDT" [1] "Calculating 1-sec interpolated values" [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] 1.30433489 6.43930716 0.50834047 2.02692705 -5.21643853 [6] -0.98182546 -3.05287138 -2.27532516 1.98246817 4.33362221 [11] 7.12539207 7.39908932 -2.81157464 -2.81157464 -0.04640644 [16] -0.04640644 -6.83843004 -15.04088843 -13.37937872 -1.62262466 [21] 4.04697538 -2.41433994 2.60965684 2.67536837 NA [26] NA NA NA NA NA [31] NA NA -10.56079166 -15.93485555 -12.18841014 [36] -7.80632322 -8.79229497 -19.88388661 -20.74948670 -11.87152416 [41] -4.10663417 -13.58384787 -13.45157881 -4.71097978 0.75909244 [46] 1.88274454 1.88274454 -6.75010961 -11.77342158 -11.77342158 [51] -9.65151578 -15.02114869 -15.02114869 -16.31282451 -15.91831777 [56] -15.75349777 -13.56354058 -11.69430319 -12.15089447 -8.14646788 [61] -8.05967964 -8.55598909 -18.72481011 -22.92102751 -22.92102751 [66] -16.68559355 -15.43929681 -12.84178593 -12.84178593 -13.80798115 [71] -17.73323919 -24.08457047 -24.08457047 -23.03932424 -21.36445063 [76] -20.39705744 -20.39705744 -20.20961584 -14.47747417 -8.95782096 [81] -8.95782096 -8.25542410 -8.23354366 -12.74264672 -12.74264672 [86] -12.74122616 -12.45206591 -11.85495920 -11.85495920 -12.17955254 [91] -12.28010026 -11.41128832 -11.41128832 -11.41128832 -13.51247964 [96] -13.56281178 -13.56281178 -12.85438436 -20.48924580 -24.97806846 [101] -24.97806846 -26.98206897 -27.43822165 -27.43822165 -27.43822165 [106] -25.75694665 -11.60235990 -11.60235990 -11.60235990 -12.56256775 [111] -17.57805471 -17.57805471 -17.55275531 -16.51416220 -7.91936756 [116] -7.91936756 -7.91936756 -7.61320737 -8.95572195 -8.95572195 [121] -8.95572195 -9.57843833 -12.43997685 -12.43997685 -12.43997685 [126] -15.41198221 -20.62775974 -20.62775974 -20.62775974 -17.97667437 [131] 0.46790649 0.46790649 0.46790649 2.03519994 5.96013897 [136] 5.96013897 5.96013897 3.24940276 -1.65626366 -1.65626366 [141] -1.65626366 -4.79802401 -13.15115353 -13.15115353 -13.15115353 [146] -10.39978458 -12.97952836 -12.97952836 -12.16939465 -9.15286473 [151] -8.46948000 -8.46948000 -8.31468306 -6.83251748 -6.80519910 [156] -6.80519910 -6.95390912 -11.10675068 -12.05688083 -12.05688083 [161] -12.05688083 -14.60222450 -14.60222450 -14.60222450 -14.95510911 [166] -16.95795299 -17.67997749 -17.67997749 -17.63569114 -28.07786167 [171] -28.07786167 -28.07786167 -29.33948984 -19.66080654 -19.66080654 [176] -19.66080654 -16.87151114 -27.28418125 -27.27379754 -27.27379754 [181] -26.95056613 -5.06282533 -5.06282533 -5.06282533 -1.98209523 [186] -8.19230395 -8.19230395 -8.19230395 -8.58540584 -17.51349499 [191] -17.51349499 -17.51349499 -18.28141244 -17.46524965 -17.47229178 [196] -17.47229178 -25.64260812 -36.48782474 -36.48782474 -36.48782474 [201] -34.00162077 -18.31212890 -18.31212890 -18.31212890 -18.39162794 [206] -23.68845845 -23.68845845 -23.60932161 -22.09896164 -19.39000595 [211] -19.39000595 -19.39000595 -23.89015325 -26.67916011 -26.67916011 [216] -26.67916011 -25.53895622 -28.85723389 -28.85723389 -28.85723389 [221] -25.82488369 -12.82788635 -12.82788635 -12.82788635 -17.84884982 [226] -26.30119379 -26.62766215 -26.62766215 -25.80141491 -24.72690259 [231] -24.57441882 -24.57441882 -26.39581605 -26.14728807 -24.81321500 [236] -24.81321500 -28.90589761 -31.46327362 -31.34075781 -31.32248871 [241] -37.83853949 -39.47478734 -41.07861523 -41.07861523 -25.97014293 [246] -25.79170881 -25.30751482 -25.09964977 -28.61714868 -28.61714868 [251] -30.28613014 [1] 225.6314 230.0951 233.9365 237.6887 241.6748 246.0123 251.3507 255.0742 [9] 260.0243 264.1388 266.7849 269.6135 271.6760 272.7791 274.5948 276.4161 [17] 278.1180 279.6246 281.4250 283.2811 285.0622 286.7033 288.4123 290.2628 [25] 291.8548 293.6228 295.2032 297.3876 298.9769 301.0288 302.5581 304.5408 [33] 306.2456 308.0596 309.8845 311.4099 313.0815 314.9590 316.8368 318.6630 [41] 320.4435 322.0727 323.4826 325.3285 327.0516 328.6670 330.1754 332.0200 [49] 333.7400 335.6250 337.2181 338.5659 340.2598 342.5570 344.0924 345.6915 [57] 347.2444 348.8008 350.6144 352.3245 354.0810 355.7365 357.4697 359.0417 [65] 360.9191 362.7027 364.1227 365.5565 367.3188 368.7025 370.4075 372.1225 [73] 373.7965 375.1899 376.5965 378.2166 379.5019 381.5773 383.1877 384.6683 [81] 386.2498 387.6527 389.3443 390.8487 392.2639 393.8436 395.3740 396.8552 [89] 398.2063 399.9359 401.5307 402.8010 404.4630 406.1718 407.5812 409.0423 [97] 410.7355 412.1309 413.7189 414.9932 416.8702 418.3551 419.9291 421.5378 [105] 422.9621 424.5320 425.8386 427.3941 428.9700 430.5439 431.7286 433.5549 [113] 434.7508 436.5435 437.7607 439.1831 440.8689 442.3167 443.5836 445.3485 [121] 446.5055 448.0291 449.5448 450.8654 452.6690 454.1071 455.5461 456.9179 [129] 458.3613 459.9268 461.2689 462.6572 463.8369 465.3491 466.8240 467.9441 [137] 469.5378 471.0068 472.3169 473.7219 475.1328 476.4486 477.8311 479.2006 [145] 480.5053 481.9847 483.4407 484.8542 486.6415 487.9451 489.2860 490.5755 [153] 491.8565 493.3371 494.7208 495.9238 497.3012 498.5687 499.8837 501.3798 [161] 502.6690 504.0279 505.3200 506.6775 508.0937 509.4236 510.7563 512.0276 [169] 513.2461 514.4854 515.8683 517.4694 518.5037 519.9361 521.2290 522.5384 [177] 523.7223 525.1587 526.4418 527.7581 529.1038 530.2664 531.5865 532.9231 [185] 534.0768 535.3296 536.3849 537.7091 538.9579 540.0880 541.4558 542.7635 [193] 544.0504 545.1557 546.4610 547.7016 549.1491 550.2736 551.5757 552.7567 [201] 554.0772 555.0408 556.2507 557.4548 558.7541 559.8896 561.1229 562.2201 [209] 563.6440 564.7780 565.9545 567.1969 568.3055 569.3733 570.6500 572.0487 [217] 573.1634 574.2563 575.5440 576.8709 577.8505 579.1780 580.4066 581.5549 [225] 582.6637 583.8924 584.8729 586.0769 587.2575 588.4417 589.5563 590.5184 [233] 591.8836 592.9266 593.9306 595.2155 596.2840 597.4394 598.5950 599.9167 [241] 601.0528 602.0622 603.2806 604.5914 605.7294 606.6723 607.8169 608.9457 [249] 610.1211 611.0945 612.2916 [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item Read 30271 records [1] 3 3027 30271 [1] "done reading AO2" [1] 2010 2010 2010 2010 2010 2010 [1] 75 75 75 75 75 75 [1] 65294 65300 65310 65320 65330 65340 [1] "2010-03-16 18:08:14 UTC" "2010-03-16 18:08:20 UTC" [3] "2010-03-16 18:08:30 UTC" "2010-03-16 18:08:40 UTC" [5] "2010-03-16 18:08:50 UTC" "2010-03-16 18:09:00 UTC" [1] NA -269.21 -258.26 -240.31 -223.89 -222.66 [1] 22744 [1] "Average Date / Time for slice RF03 = 2010-03-29 21:48:01.26907992362976" [1] "sum(lsel) = 2293" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 8.333862 821.356812 [1] 8.333862 821.356812 [1] 178.6432 991.6661 [1] 1.088143e-02 9.999990e+05 [1] "highestmid = 671.04129" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO3 RF03 APO_AO2 range = -346.42,-275.71" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 30271 records [1] 3 3027 30271 [1] "done reading AO2" [1] 2010 2010 2010 2010 2010 2010 [1] 75 75 75 75 75 75 [1] 65294 65300 65310 65320 65330 65340 [1] "2010-03-16 18:08:14 UTC" "2010-03-16 18:08:20 UTC" [3] "2010-03-16 18:08:30 UTC" "2010-03-16 18:08:40 UTC" [5] "2010-03-16 18:08:50 UTC" "2010-03-16 18:09:00 UTC" [1] -528.60 -530.63 -517.65 -489.41 -459.65 -452.92 [1] 22753 [1] "Average Date / Time for slice RF03 = 2010-03-29 21:48:04.45945954322815" [1] "sum(lsel) = 2294" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 8.333862 821.356812 [1] 8.333862 821.356812 [1] 178.6432 991.6661 [1] 1.088143e-02 9.999990e+05 [1] "highestmid = 671.04129" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO3 RF03 O2_AO2 range = -589.17,-469.39" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 30271 records [1] 3 3027 30271 [1] "done reading AO2" [1] 2010 2010 2010 2010 2010 2010 [1] 75 75 75 75 75 75 [1] 65294 65300 65310 65320 65330 65340 [1] "2010-03-16 18:08:14 UTC" "2010-03-16 18:08:20 UTC" [3] "2010-03-16 18:08:30 UTC" "2010-03-16 18:08:40 UTC" [5] "2010-03-16 18:08:50 UTC" "2010-03-16 18:09:00 UTC" [1] NA 399.703 399.111 397.419 394.779 393.928 [1] 23938 [1] "Average Date / Time for slice RF03 = 2010-03-29 21:48:07.93568015098572" [1] "sum(lsel) = 2301" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 8.333862 821.356812 [1] 8.333862 821.356812 [1] 178.6432 991.6661 [1] 1.088143e-02 9.999990e+05 [1] "highestmid = 671.04129" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO3 RF03 CO2_AO2 range = 384.84,396.6" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 1142 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1142 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1142 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1142 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1142 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1142 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1142 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1142 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1142 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1142 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 1142 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"