[1] "2025-05-13 11:33:07 MDT" options [1,] "file" "091107a" [2,] "flight" "RF04" [3,] "project" "HIPPO2" [4,] "png" "TRUE" [5,] "valveskip" "120" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "0" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "TRUE" [26,] "vxavail" "TRUE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "posttoonly" [48,] "o2caltype" "posttoonly" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "FALSE" [64,] "icartt" "0" [65,] "icarttrev" "0" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "091107a" [1] "Reading in flight and plotting intervals" Read 22 records [1] "Reading in /scr/raf/stephens/AO2DAT/091107a.mr" Read 13769 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.16 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.2 seconds" [1] "New JOGEST = 2.2 seconds" [1] "New VALVE SKIP = 55 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/091107a.hr" Read 55083 records [1] "HR FILE LENGTH NOT NSWITCH * MRDATA FILE LENGTH" [1] 13769 55083 [1] "HR FILE LENGTH NOT MULTIPLE OF NSWITCH" [1] 13769 55083 [1] "Converting hrdata statout" [1] "Tue May 13 11:33:08 AM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30069 description: HS CO2 = 337.05 O2 = -384.8" [1] "position 2 cylinder OK30070 description: LS CO2 = 410.27 O2 = -1005.7" [1] "position 3 cylinder OK170199 description: LT CO2 = 384.88 O2 = -780.7" [1] "position 4 cylinder OK30054 description: WT CO2 = 384.87 O2 = -834.2" [1] 337.0459 410.2682 384.8803 384.8657 NA [1] -384.8252 -1005.6803 -780.6557 -834.1711 NA [1] "Nominal linear calibrations:" [1] "co2scl = 0.902 co2off = -38.59 o2scla = -0.048 o2offa = -61.1" [1] "(dV/V)/(dXO2/XO2) = -4.397" [1] "(dV/V)/d(O2/N2) = -3.476" [1] "Reading in very high resolution timeseries" Read 275380 records [1] 275380 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 11:33:08 AM MDT 2025 done approxing mr variables" [1] "Tue May 13 11:33:11 AM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.476" [1] "o2scaleavenew_drelVdrelP = -4.397" [1] "median(o2scalenew) = -3.474" [1] "Empirical dV/V vs dP/P relationship =-3.596, r^2 =0.012, damping =0.818" [1] "Tue May 13 11:33:11 AM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "MASKING 20 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 11:33:50 AM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 26944898.77584 SECONDS" [1] "Tue May 13 11:33:50 AM MDT 2025 done recreating mr o2diffs" [1] "Removed 5 medium-rate record(s) with accumulation errors" [1] "Removed 630 medium-rate record(s) > eco or < ico" [1] "from: 1" [1] "to: 489" [1] "from: 13624" [1] "to: 13764" [1] "Removed 274 medium-rate record(s) from calbreak period" [1] "from: 2408" [1] "to: 2681" [1] "Removed 1 medium-rate record(s) from screenall period" [1] "at: 3197" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 1759 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 162.848 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 113.491 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 109.274 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -12.284 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 6 [1] 110 [1] 130 [1] 130 [1] 130 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 128 311.8408 569.94706902 997365.1 -1 [2,] 129 311.8409 1450.77574301 996717.0 1 [3,] 130 311.8409 2264.69332417 998990.4 -1 [4,] 206 311.8429 2008.13260334 998887.7 -1 [5,] 207 311.8429 1102.15650508 996933.4 1 [6,] 208 311.8429 258.84012498 997186.7 -1 [7,] 282 311.8448 0.06508567 996653.7 -1 [8,] 283 311.8449 153.55032873 996663.6 1 [9,] 284 311.8449 510.96520952 997237.9 -1 [10,] 285 311.8449 1019.39738647 996657.7 1 [11,] 286 311.8450 1450.59055812 998121.7 -1 [12,] 388 311.8477 1696.41377927 998227.4 -1 [13,] 389 311.8478 1104.86725690 996508.7 1 [14,] 390 311.8478 519.51144475 997000.4 -1 [15,] 677 311.8565 164.87519347 995376.3 1 [16,] 678 311.8566 185.72618300 995443.4 -1 [17,] 679 311.8566 252.50398349 995136.7 1 [18,] 969 311.8645 216.77761870 997181.5 -1 [19,] 973 311.8646 206.68351746 997225.0 -1 [20,] 974 311.8646 915.98488739 997020.9 1 [21,] 975 311.8647 1765.04321708 998888.3 -1 [22,] 976 311.8647 2194.04874851 997042.2 1 [23,] 977 311.8647 2317.78726457 999393.7 -1 [24,] 1051 311.8666 2383.34478099 1000654.9 -1 [25,] 1052 311.8666 1482.09830915 998262.0 1 [26,] 1053 311.8667 539.12572929 998766.3 -1 [27,] 1055 311.8667 123.89842590 998408.0 -1 [28,] 1129 311.8686 10.90069383 999312.0 -1 [29,] 1130 311.8686 562.82904339 999324.5 1 [30,] 1131 311.8687 1221.38870580 1000618.3 -1 [31,] 1133 311.8687 1599.67783869 1001000.4 -1 [32,] 1207 311.8706 1689.06340075 1001881.8 -1 [33,] 1208 311.8706 1136.79107743 1000202.1 1 [34,] 1209 311.8707 572.07225659 1000779.2 -1 [35,] 2257 311.8992 236.63361953 991667.5 -1 [36,] 2337 311.9012 -37.68174838 992233.4 -1 [37,] 2338 311.9012 147.11356835 992278.7 1 [38,] 2339 311.9013 631.78099130 993036.0 -1 [39,] 2340 311.9013 1476.62148388 992330.2 1 [40,] 2341 311.9013 2211.93762163 994573.6 -1 [41,] 2406 311.9030 2382.00243810 993469.9 1 [42,] 2407 311.9030 2372.94562386 995868.5 -1 [43,] 2408 311.9100 255.43945339 997360.9 1 [44,] 2409 311.9100 231.81027110 997622.6 -1 [45,] 3344 311.9338 261.65269481 996924.9 -1 [46,] 3346 311.9339 279.32893271 996993.3 -1 [47,] 3347 311.9339 366.45608416 996722.1 1 [48,] 3348 311.9339 754.40315594 997568.9 -1 [49,] 3349 311.9339 1524.34851574 996736.0 1 [50,] 3350 311.9340 2216.88557438 998975.1 -1 [51,] 3426 311.9359 2101.20830642 999646.2 -1 [52,] 3427 311.9359 1255.65815892 997581.6 1 [53,] 3428 311.9359 195.43288756 997783.2 -1 [54,] 3504 311.9379 186.13023115 998519.0 -1 [55,] 3505 311.9379 874.66493918 998311.6 1 [56,] 3506 311.9379 1529.73145694 999875.2 -1 [57,] 3582 311.9398 1237.62530373 1000245.9 -1 [58,] 3583 311.9399 788.63614008 999062.0 1 [59,] 3584 311.9399 415.40118537 999469.9 -1 [60,] 4712 311.9686 39.72708610 1000495.1 -1 [61,] 4784 311.9705 -42.70279873 1000915.7 -1 [62,] 4785 311.9705 19.29507796 1000956.6 1 [63,] 4786 311.9706 601.64633539 1001679.4 -1 [64,] 4787 311.9707 2293.08803006 1003322.3 -1 [65,] 4791 311.9708 2143.84038902 1003186.9 -1 [66,] 4792 311.9709 1302.03441862 1001050.7 1 [67,] 4793 311.9709 517.52991657 1001519.8 -1 [68,] 5040 311.9785 310.75551343 999640.5 -1 [69,] 5046 311.9787 56.21813380 999292.9 -1 [70,] 5122 311.9806 -64.01429176 998239.4 -1 [71,] 5123 311.9807 806.28637159 998292.8 1 [72,] 5124 311.9807 1794.73569104 1000138.3 -1 [73,] 5126 311.9807 2238.30560614 1000519.2 -1 [74,] 5200 311.9828 2250.30189946 999399.5 -1 [75,] 5201 311.9828 1985.89656089 997144.8 1 [76,] 5202 311.9829 1710.50680353 998844.7 -1 [77,] 5278 311.9850 1656.31082652 997822.1 -1 [78,] 5279 311.9850 1168.93757393 996153.6 1 [79,] 5280 311.9851 623.60131310 996742.9 -1 [80,] 6384 312.0131 315.99937017 1001686.6 -1 [81,] 6388 312.0132 297.53028414 1001662.8 -1 [82,] 6389 312.0133 945.51979358 1001341.7 1 [83,] 6390 312.0133 1700.26362548 1003106.9 -1 [84,] 6392 312.0133 2253.16058317 1003559.2 -1 [85,] 6466 312.0152 2344.89137971 1002825.1 -1 [86,] 6467 312.0153 1385.60689352 1000455.5 1 [87,] 6468 312.0153 421.64034516 1000821.3 -1 [88,] 6470 312.0153 83.10439341 1000487.0 -1 [89,] 6544 312.0172 -64.00320303 999489.1 -1 [90,] 6545 312.0172 508.94936928 999546.3 1 [91,] 6546 312.0173 1155.71253236 1000729.2 -1 [92,] 6548 312.0173 1524.89657145 1001043.7 -1 [93,] 6622 312.0192 1485.48229388 1000078.1 -1 [94,] 6623 312.0192 1034.85200651 998583.0 1 [95,] 6624 312.0192 546.04898777 999119.6 -1 [96,] 7744 312.0478 301.79103996 1001850.3 -1 [97,] 7750 312.0479 -15.81805870 1001440.7 -1 [98,] 7824 312.0498 -41.05523019 1000675.9 -1 [99,] 7825 312.0498 29.55805101 1000710.4 1 [100,] 7826 312.0499 435.11710109 1001206.4 -1 [101,] 7827 312.0499 1331.84079052 1000697.6 1 [102,] 7828 312.0499 2173.06278669 1002886.1 -1 [103,] 7902 312.0518 2352.49043856 1002432.4 -1 [104,] 7903 312.0518 2237.79325207 1000063.7 1 [105,] 7904 312.0518 1827.33435189 1001847.4 -1 [106,] 7905 312.0519 1110.83223589 1000070.5 1 [107,] 7906 312.0519 484.20840685 1000550.8 -1 [108,] 9104 312.0824 318.17059064 1005804.0 -1 [109,] 9108 312.0825 527.54968649 1006012.9 -1 [110,] 9109 312.0825 1358.03336555 1005429.5 1 [111,] 9110 312.0826 2166.97784502 1007618.1 -1 [112,] 9186 312.0845 1923.04200088 1006677.0 -1 [113,] 9187 312.0845 991.81604436 1004786.9 1 [114,] 9188 312.0846 154.70416865 1004901.7 -1 [115,] 11412 312.1422 358.29538147 1001414.6 -1 [116,] 11418 312.1423 104.88162056 1001083.5 -1 [117,] 11494 312.1443 -60.75403901 1000287.9 -1 [118,] 11495 312.1443 941.22021630 1000360.0 1 [119,] 11496 312.1443 1961.83498990 1002363.4 -1 [120,] 11498 312.1444 2276.09664013 1002627.2 -1 [121,] 11572 312.1463 2340.93714160 1001897.4 -1 [122,] 11573 312.1463 2071.46548369 999532.8 1 [123,] 11574 312.1463 1762.79867088 1001278.8 -1 [124,] 11728 312.1502 1573.40752706 998988.4 -1 [125,] 11729 312.1502 1020.30542957 997411.0 1 [126,] 11730 312.1503 495.95167743 997893.3 -1 [127,] 12783 312.1773 344.00162656 985916.0 -1 [128,] 12785 312.1774 516.32431710 986059.2 -1 [129,] 12786 312.1774 1035.87242656 985478.5 1 [130,] 12787 312.1774 1548.69079341 987010.6 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 12817 312.1782 1183452 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 162.848 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 53.099 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 52.161 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -12.284 PER MEG" [1] 337.0459 410.2682 384.8803 384.8657 NA [1] -384.8252 -1005.6803 -780.6557 -834.1711 NA [1] "Nominal linear calibrations:" [1] "co2scl = 0.902 co2off = -38.54 o2scla = -0.048 o2offa = -61.2" [1] "(dV/V)/(dXO2/XO2) = -4.382" [1] "(dV/V)/d(O2/N2) = -3.464" [1] "Finding cal and sample periods" [1] "Median Cal: 2.82 minutes" [1] "Average Cal: 2.71 minutes" [1] "Shortest Cal: 0.34 minutes" [1] "Longest Cal: 3.17 minutes" [1] "Removed 2 calibration period(s) with less than 30 seconds of data" [1] "at: 4" [1] "at: 14" [1] "Reading in aircraft data" [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.008" [1] "HS CO2 vs. PACAB: m = -0.00792, r^2 = 0.17" [1] "LS CO2 vs. PACAB: m = -0.00808, r^2 = 0.11" [1] "HS+LS LIH2O vs. PACAB: m = -0.00116" [1] "HS LIH2O vs. PACAB: m = -0.00254, r^2 = 0.01" [1] "LS LIH2O vs. PACAB: m = 0.000223, r^2 = 0" [1] "HS+LS CO2 vs. LIH2O: m = -0.549" [1] "HS CO2 vs. LIH2O: m = -0.0398, r^2 = 0.01" [1] "LS CO2 vs. LIH2O: m = -1.06, r^2 = 0.87" [1] "APCO2 vs. PACAB: m = 0.00979, r^2 = 0.03" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 0.178" [1] "HS O2 vs. PACAB: m = 0.287, r^2 = 0.69" [1] "LS O2 vs. PACAB: m = 0.0695, r^2 = 0.15" [1] "HS+LS O2 vs. LIH2O: m = -0.819" [1] "HS O2 vs. LIH2O: m = 1.43, r^2 = 0.05" [1] "LS O2 vs. LIH2O: m = -3.07, r^2 = 0.36" [1] "HS+LS O2 vs. PAO2: m = -29.7" [1] "HS O2 vs. PAO2: m = -50.4, r^2 = 0.91" [1] "LS O2 vs. PAO2: m = -9.14, r^2 = 0.07" [1] "HS+LS O2 vs. TPBOX: m = 2.88" [1] "HS O2 vs. TPBOX: m = 5.52, r^2 = 0.42" [1] "LS O2 vs. TPBOX: m = 0.24, r^2 = 0" [1] "APO vs. PACAB: m = -0.161, r^2 = 0.03" [1] "APO vs. PAO2: m = -43.2, r^2 = 0.21" [1] "APO vs. TPBOX: m = 2.07, r^2 = 0.01" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = -33.7, r^2 = 0.07" [1] "LS CO2 vs. LiCor Cell P: m = -46.9, r^2 = 0.14" [1] "HS CO2 vs. CO2 Vol P: m = -0.858, r^2 = 0.01" [1] "LS CO2 vs. CO2 Vol P: m = -0.409, r^2 = 0" [1] "HS CO2 vs. SLOPE: m = 0.277, r^2 = 0.03" [1] "LS CO2 vs. SLOPE: m = -0.475, r^2 = 0.1" [1] "HS O2 vs. O2 Vol P: m = -52.8, r^2 = 0.85" [1] "LS O2 vs. O2 Vol P: m = -16.8, r^2 = 0.08" [1] "HS O2 vs. O2 Cell T: m = 20.9, r^2 = 0.53" [1] "LS O2 vs. O2 Cell T: m = -10.6, r^2 = 0.07" [1] "HS O2 vs. CO2 Vol P: m = -68.7, r^2 = 0.86" [1] "LS O2 vs. CO2 Vol P: m = -44.8, r^2 = 0.39" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = 3.6, r^2 = 0.08" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = 16.2, r^2 = 0.49" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -68.7, r^2 = 0.86" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -44.8, r^2 = 0.39" [1] "HS O2 vs. LIH2O: m = 1.23, r^2 = 0.03" [1] "LS O2 vs. LIH2O: m = -1.83, r^2 = 0.04" [1] "HS O2 vs. SLOPE: m = 0.224, r^2 = 0.15" [1] "LS O2 vs. SLOPE: m = -0.294, r^2 = 0.06" [1] "HS CO2 vs. Time: m = 29.054, r^2 = 0.77" [1] "LS CO2 vs. Time: m = 31.452, r^2 = 0.78" [1] "HS CO2 vs. Cylinder T: m = -1.129, r^2 = 0.14" [1] "LS CO2 vs. Cylinder T: m = -1.329, r^2 = 0.109" [1] "HS CO2 vs. Regulator T: m = -0.526, r^2 = 0.07" [1] "LS CO2 vs. Regulator T: m = -0.564, r^2 = 0.041" [1] "HS CO2 vs. Ref. Volumes T: m = 2.089, r^2 = 0.03" [1] "LS CO2 vs. Ref. Volumes T: m = 0.971, r^2 = 0.004" [1] "HS CO2 vs. Manifold T: m = 0.715, r^2 = 0.1" [1] "LS CO2 vs. Manifold T: m = 0.763, r^2 = 0.045" [1] "HS CO2 vs. Pump Box T: m = 0.156, r^2 = 0.03" [1] "LS CO2 vs. Pump Box T: m = 0.245, r^2 = 0.018" [1] "HS O2 vs. Cylinder T: m = 19.761, r^2 = 0.4" [1] "LS O2 vs. Cylinder T: m = 19.319, r^2 = 0.373" [1] "HS O2 vs. Regulator T: m = 15.396, r^2 = 0.55" [1] "LS O2 vs. Regulator T: m = 14.817, r^2 = 0.462" [1] "HS O2 vs. Ref. Volumes T: m = 75.737, r^2 = 0.36" [1] "LS O2 vs. Ref. Volumes T: m = -16.827, r^2 = 0.022" [1] "HS O2 vs. Manifold T: m = 20.535, r^2 = 0.73" [1] "LS O2 vs. Manifold T: m = 1.785, r^2 = 0.004" [1] "HS O2 vs. Pump Box T: m = 4.016, r^2 = 0.16" [1] "LS O2 vs. Pump Box T: m = -3.82, r^2 = 0.07" [1] "HS CO2 vs. WT P: m = -0.005, r^2 = 0.02" [1] "LS CO2 vs. WT P: m = -0.009, r^2 = 0.086" [1] "HS CO2 vs. SP P: m = -0.00506, r^2 = 0.07" [1] "HS CO2 vs. PACAB comb with SP P: m = -0.015, r^2 = 0.03" [1] "HS CO2 vs. SP P comb with PACAB: m = 0.009, r^2 = 0.03" [1] "LS CO2 vs. SP P: m = -0.00879, r^2 = 0.2" [1] "LS CO2 vs. PACAB comb with SP P: m = -0.154, r^2 = 0.19" [1] "LS CO2 vs. SP P comb with PACAB: m = 0.134, r^2 = 0.19" [1] "HS CO2 vs. WT FL: m = 0.232, r^2 = 0.02" [1] "LS CO2 vs. WT FL: m = -0.275, r^2 = 0.02" [1] "HS CO2 vs. SP FL: m = 0.212, r^2 = 0.04" [1] "LS CO2 vs. SP FL: m = 0.367, r^2 = 0.098" [1] "HS O2 vs. SLPDIFF: m = 0.575, r^2 = 0.14" [1] "LS O2 vs. SLPDIFF: m = 0.424, r^2 = 0.059" [1] "HS O2 vs. WT P: m = 0.228, r^2 = 0.45" [1] "LS O2 vs. WT P: m = 0.164, r^2 = 0.447" [1] "HS O2 vs. SP P: m = 0.231, r^2 = 0.45" [1] "LS O2 vs. SP P: m = 0.167, r^2 = 0.445" [1] "HS O2 vs. WT FL: m = 17.559, r^2 = 0.86" [1] "LS O2 vs. WT FL: m = 9.361, r^2 = 0.384" [1] "HS O2 vs. SP FL: m = -5.739, r^2 = 0.28" [1] "LS O2 vs. SP FL: m = -6.125, r^2 = 0.445" [1] "Plotting calibration shapes" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.61" [1] "Median all HS CO2 SD = 0.61" [1] "Median all LS CO2 SD = 0.69" [1] "Median all LT CO2 SD = 0.68" [1] "Median all WT CO2 SD = 0.49" [1] "Median all HS or LS CO2 SD = 0.61" [1] "Median all cal O2 SD = 1.87" [1] "Median all HS O2 SD = 1.78" [1] "Median all LS O2 SD = 2.14" [1] "Median all LT O2 SD = 3.32" [1] "Median all WT O2 SD = 1.6" [1] "Median all HS or LS O2 SD = 1.87" [1] "Median all cal CO2 Slope = -0.13" [1] "Median all HS CO2 Slope = -0.3" [1] "Median all LS CO2 Slope = -0.13" [1] "Median all LT CO2 Slope = 0.03" [1] "Median all WT CO2 Slope = -0.24" [1] "Median all HS or LS CO2 Slope = -0.15" [1] "Median all cal O2 Slope = 1.25" [1] "Median all HS O2 Slope = 1.41" [1] "Median all LS O2 Slope = 1.13" [1] "Median all LT O2 Slope = 10.51" [1] "Median all WT O2 Slope = -0.79" [1] "Median all HS or LS O2 Slope = 1.19" [1] "Broke calibration interpolation before 311.903 and after 311.91" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 5.53 per meg" [1] "Initial O2 Calibration Offset = -11.56 per meg" [1] "SD of O2 Calibration (post-takeoff) = 5.53 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = -11.56 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using HIPPO1-2 inlet volumes" [1] "before any lag: 72336.07 101891.09" [1] "Time lag adjustments = 0 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 39.6 at 105.1 sccm" [1] "Median O2 delay + tlagff = 40.5 at 105.1 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 38 at 105.1 sccm" [1] "Median O2 delay from 3-way + tlagff = 38.9 at 105.1 sccm" [1] "after calc and ff lag: 72294.56 101847.08" [1] "2025-05-13 11:34:40 MDT" [1] "Calculating 1-sec interpolated values" [1] "Screened 641 1-Hz values because of data gaps at:" [1] 311.8618 311.8618 311.8618 311.8618 311.9026 311.9026 311.9026 311.9026 [9] 311.9026 311.9027 311.9027 311.9027 311.9027 311.9027 311.9027 311.9027 [17] 311.9027 311.9027 311.9028 311.9028 311.9028 311.9028 311.9028 311.9028 [25] 311.9028 311.9028 311.9028 311.9029 311.9029 311.9029 311.9029 311.9029 [33] 311.9029 311.9029 311.9029 311.9030 311.9030 311.9030 311.9030 311.9030 [41] 311.9030 311.9030 311.9030 311.9030 311.9031 311.9031 311.9031 311.9031 [49] 311.9031 311.9031 311.9031 311.9031 311.9031 311.9032 311.9032 311.9032 [57] 311.9032 311.9032 311.9032 311.9032 311.9032 311.9033 311.9033 311.9033 [65] 311.9033 311.9033 311.9033 311.9033 311.9033 311.9033 311.9034 311.9034 [73] 311.9034 311.9034 311.9034 311.9034 311.9034 311.9034 311.9034 311.9035 [81] 311.9035 311.9035 311.9035 311.9035 311.9035 311.9035 311.9035 311.9036 [89] 311.9036 311.9036 311.9036 311.9036 311.9036 311.9036 311.9036 311.9036 [97] 311.9037 311.9037 311.9037 311.9037 311.9037 311.9037 311.9037 311.9037 [105] 311.9038 311.9038 311.9038 311.9038 311.9038 311.9038 311.9038 311.9038 [113] 311.9038 311.9039 311.9039 311.9039 311.9039 311.9039 311.9039 311.9039 [121] 311.9039 311.9039 311.9040 311.9040 311.9040 311.9040 311.9040 311.9040 [129] 311.9040 311.9040 311.9041 311.9041 311.9041 311.9041 311.9041 311.9041 [137] 311.9041 311.9041 311.9041 311.9042 311.9042 311.9042 311.9042 311.9042 [145] 311.9042 311.9042 311.9042 311.9042 311.9043 311.9043 311.9043 311.9043 [153] 311.9043 311.9043 311.9043 311.9043 311.9044 311.9044 311.9044 311.9044 [161] 311.9044 311.9044 311.9044 311.9044 311.9044 311.9045 311.9045 311.9045 [169] 311.9045 311.9045 311.9045 311.9045 311.9045 311.9045 311.9046 311.9046 [177] 311.9046 311.9046 311.9046 311.9046 311.9046 311.9046 311.9047 311.9047 [185] 311.9047 311.9047 311.9047 311.9047 311.9047 311.9047 311.9047 311.9048 [193] 311.9048 311.9048 311.9048 311.9048 311.9048 311.9048 311.9048 311.9048 [201] 311.9049 311.9049 311.9049 311.9049 311.9049 311.9049 311.9049 311.9049 [209] 311.9050 311.9050 311.9050 311.9050 311.9050 311.9050 311.9050 311.9050 [217] 311.9050 311.9051 311.9051 311.9051 311.9051 311.9051 311.9051 311.9051 [225] 311.9051 311.9052 311.9052 311.9052 311.9052 311.9052 311.9052 311.9052 [233] 311.9052 311.9052 311.9053 311.9053 311.9053 311.9053 311.9053 311.9053 [241] 311.9053 311.9053 311.9053 311.9054 311.9054 311.9054 311.9054 311.9054 [249] 311.9054 311.9054 311.9054 311.9055 311.9055 311.9055 311.9055 311.9055 [257] 311.9055 311.9055 311.9055 311.9055 311.9056 311.9056 311.9056 311.9056 [265] 311.9056 311.9056 311.9056 311.9056 311.9056 311.9057 311.9057 311.9057 [273] 311.9057 311.9057 311.9057 311.9057 311.9057 311.9058 311.9058 311.9058 [281] 311.9058 311.9058 311.9058 311.9058 311.9058 311.9058 311.9059 311.9059 [289] 311.9059 311.9059 311.9059 311.9059 311.9059 311.9059 311.9059 311.9060 [297] 311.9060 311.9060 311.9060 311.9060 311.9060 311.9060 311.9060 311.9061 [305] 311.9061 311.9061 311.9061 311.9061 311.9061 311.9061 311.9061 311.9061 [313] 311.9062 311.9062 311.9062 311.9062 311.9062 311.9062 311.9062 311.9062 [321] 311.9062 311.9063 311.9063 311.9063 311.9063 311.9063 311.9063 311.9063 [329] 311.9063 311.9064 311.9064 311.9064 311.9064 311.9064 311.9064 311.9064 [337] 311.9064 311.9064 311.9065 311.9065 311.9065 311.9065 311.9065 311.9065 [345] 311.9065 311.9065 311.9066 311.9066 311.9066 311.9066 311.9066 311.9066 [353] 311.9066 311.9066 311.9066 311.9067 311.9067 311.9067 311.9067 311.9067 [361] 311.9067 311.9067 311.9067 311.9067 311.9068 311.9068 311.9068 311.9068 [369] 311.9068 311.9068 311.9068 311.9068 311.9069 311.9069 311.9069 311.9069 [377] 311.9069 311.9069 311.9069 311.9069 311.9069 311.9070 311.9070 311.9070 [385] 311.9070 311.9070 311.9070 311.9070 311.9070 311.9070 311.9071 311.9071 [393] 311.9071 311.9071 311.9071 311.9071 311.9071 311.9071 311.9072 311.9072 [401] 311.9072 311.9072 311.9072 311.9072 311.9072 311.9072 311.9072 311.9073 [409] 311.9073 311.9073 311.9073 311.9073 311.9073 311.9073 311.9073 311.9073 [417] 311.9074 311.9074 311.9074 311.9074 311.9074 311.9074 311.9074 311.9074 [425] 311.9075 311.9075 311.9075 311.9075 311.9075 311.9075 311.9075 311.9075 [433] 311.9075 311.9076 311.9076 311.9076 311.9076 311.9076 311.9076 311.9076 [441] 311.9076 311.9077 311.9077 311.9077 311.9077 311.9077 311.9077 311.9077 [449] 311.9077 311.9077 311.9078 311.9078 311.9078 311.9078 311.9078 311.9078 [457] 311.9078 311.9078 311.9078 311.9079 311.9079 311.9079 311.9079 311.9079 [465] 311.9079 311.9079 311.9079 311.9080 311.9080 311.9080 311.9080 311.9080 [473] 311.9080 311.9080 311.9080 311.9080 311.9081 311.9081 311.9081 311.9081 [481] 311.9081 311.9081 311.9081 311.9081 311.9081 311.9082 311.9082 311.9082 [489] 311.9082 311.9082 311.9082 311.9082 311.9082 311.9083 311.9083 311.9083 [497] 311.9083 311.9083 311.9083 311.9083 311.9083 311.9083 311.9084 311.9084 [505] 311.9084 311.9084 311.9084 311.9084 311.9084 311.9084 311.9084 311.9085 [513] 311.9085 311.9085 311.9085 311.9085 311.9085 311.9085 311.9085 311.9086 [521] 311.9086 311.9086 311.9086 311.9086 311.9086 311.9086 311.9086 311.9086 [529] 311.9087 311.9087 311.9087 311.9087 311.9087 311.9087 311.9087 311.9087 [537] 311.9087 311.9088 311.9088 311.9088 311.9088 311.9088 311.9088 311.9088 [545] 311.9088 311.9089 311.9089 311.9089 311.9089 311.9089 311.9089 311.9089 [553] 311.9089 311.9089 311.9090 311.9090 311.9090 311.9090 311.9090 311.9090 [561] 311.9090 311.9090 311.9091 311.9091 311.9091 311.9091 311.9091 311.9091 [569] 311.9091 311.9091 311.9091 311.9092 311.9092 311.9092 311.9092 311.9092 [577] 311.9092 311.9092 311.9092 311.9092 311.9093 311.9093 311.9093 311.9093 [585] 311.9093 311.9093 311.9093 311.9093 311.9094 311.9094 311.9094 311.9094 [593] 311.9094 311.9094 311.9094 311.9094 311.9094 311.9095 312.1789 312.1789 [601] 312.1789 312.1789 312.1789 312.1789 312.1789 312.1789 312.1789 312.1790 [609] 312.1790 312.1790 312.1790 312.1790 312.1790 312.1790 312.1790 312.1791 [617] 312.1791 312.1791 312.1791 312.1791 312.1791 312.1791 312.1791 312.1791 [625] 312.1792 312.1792 312.1792 312.1792 312.1792 312.1792 312.1792 312.1792 [633] 312.1792 312.1793 312.1793 312.1793 312.1793 312.1793 312.1793 312.1793 [641] 312.1793 [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Not reporting 25 O2 values from manual exclude period 311.859469 to 311.860084" [1] "Not reporting 25 APO values from manual exclude period 311.859469 to 311.860084" [1] "Not reporting 22 O2 values from manual exclude period 311.889217 to 311.889833" [1] "Not reporting 22 APO values from manual exclude period 311.889217 to 311.889833" [1] "Not reporting 16 O2 values from manual exclude period 311.913836 to 311.914247" [1] "Not reporting 16 APO values from manual exclude period 311.913836 to 311.914247" [1] "Not reporting 56 O2 values from manual exclude period 311.939481 to 311.940918" [1] "Not reporting 56 APO values from manual exclude period 311.939481 to 311.940918" [1] "Not reporting 39 O2 values from manual exclude period 311.967588 to 311.968614" [1] "Not reporting 39 APO values from manual exclude period 311.967588 to 311.968614" [1] "Not reporting 23 O2 values from manual exclude period 311.97559 to 311.97641" [1] "Not reporting 23 APO values from manual exclude period 311.97559 to 311.97641" [1] "Not reporting 41 O2 values from manual exclude period 312.0396 to 312.040626" [1] "Not reporting 41 APO values from manual exclude period 312.0396 to 312.040626" [1] "Not reporting 22 O2 values from manual exclude period 312.062783 to 312.063398" [1] "Not reporting 22 APO values from manual exclude period 312.062783 to 312.063398" [1] "Not reporting 25 O2 values from manual exclude period 312.155515 to 312.156131" [1] "Not reporting 25 APO values from manual exclude period 312.155515 to 312.156131" [1] "Not reporting 18 O2 values from manual exclude period 312.176032 to 312.176647" [1] "Not reporting 18 APO values from manual exclude period 312.176032 to 312.176647" [1] "Not reporting 54 smoothed O2 values from manual exclude period 311.859028584419 to 311.859655009591" [1] "Not reporting 54 smoothed APO values from manual exclude period 311.859028584419 to 311.859655009591" [1] "Not reporting 55 smoothed O2 values from manual exclude period 311.888749738588 to 311.889378948193" [1] "Not reporting 55 smoothed APO values from manual exclude period 311.888749738588 to 311.889378948193" [1] "Not reporting 37 smoothed O2 values from manual exclude period 311.913351372622 to 311.913775765137" [1] "Not reporting 37 smoothed APO values from manual exclude period 311.913351372622 to 311.913775765137" [1] "Not reporting 124 smoothed O2 values from manual exclude period 311.938996091759 to 311.940435554278" [1] "Not reporting 124 smoothed APO values from manual exclude period 311.938996091759 to 311.940435554278" [1] "Not reporting 89 smoothed O2 values from manual exclude period 311.967101092142 to 311.968135483376" [1] "Not reporting 89 smoothed APO values from manual exclude period 311.967101092142 to 311.968135483376" [1] "Not reporting 72 smoothed O2 values from manual exclude period 311.975109005681 to 311.975943707027" [1] "Not reporting 72 smoothed APO values from manual exclude period 311.975109005681 to 311.975943707027" [1] "Not reporting 90 smoothed O2 values from manual exclude period 312.039108854561 to 312.040153233171" [1] "Not reporting 90 smoothed APO values from manual exclude period 312.039108854561 to 312.040153233171" [1] "Not reporting 54 smoothed O2 values from manual exclude period 312.062301048937 to 312.062924379734" [1] "Not reporting 54 smoothed APO values from manual exclude period 312.062301048937 to 312.062924379734" [1] "Not reporting 54 smoothed O2 values from manual exclude period 312.155076130724 to 312.155702954914" [1] "Not reporting 54 smoothed APO values from manual exclude period 312.155076130724 to 312.155702954914" [1] "Not reporting 54 smoothed O2 values from manual exclude period 312.175524625233 to 312.176150111841" [1] "Not reporting 54 smoothed APO values from manual exclude period 312.175524625233 to 312.176150111841" [1] "Not reporting 54 smoothed O2 values from manual exclude period 311.859028584419 to 311.859655009591" [1] "Not reporting 54 smoothed APO values from manual exclude period 311.859028584419 to 311.859655009591" [1] "Not reporting 55 smoothed O2 values from manual exclude period 311.888749738588 to 311.889378948193" [1] "Not reporting 55 smoothed APO values from manual exclude period 311.888749738588 to 311.889378948193" [1] "Not reporting 37 smoothed O2 values from manual exclude period 311.913351372622 to 311.913775765137" [1] "Not reporting 37 smoothed APO values from manual exclude period 311.913351372622 to 311.913775765137" [1] "Not reporting 124 smoothed O2 values from manual exclude period 311.938996091759 to 311.940435554278" [1] "Not reporting 124 smoothed APO values from manual exclude period 311.938996091759 to 311.940435554278" [1] "Not reporting 89 smoothed O2 values from manual exclude period 311.967101092142 to 311.968135483376" [1] "Not reporting 89 smoothed APO values from manual exclude period 311.967101092142 to 311.968135483376" [1] "Not reporting 72 smoothed O2 values from manual exclude period 311.975109005681 to 311.975943707027" [1] "Not reporting 72 smoothed APO values from manual exclude period 311.975109005681 to 311.975943707027" [1] "Not reporting 90 smoothed O2 values from manual exclude period 312.039108854561 to 312.040153233171" [1] "Not reporting 90 smoothed APO values from manual exclude period 312.039108854561 to 312.040153233171" [1] "Not reporting 54 smoothed O2 values from manual exclude period 312.062301048937 to 312.062924379734" [1] "Not reporting 54 smoothed APO values from manual exclude period 312.062301048937 to 312.062924379734" [1] "Not reporting 54 smoothed O2 values from manual exclude period 312.155076130724 to 312.155702954914" [1] "Not reporting 54 smoothed APO values from manual exclude period 312.155076130724 to 312.155702954914" [1] "Not reporting 54 smoothed O2 values from manual exclude period 312.175524625233 to 312.176150111841" [1] "Not reporting 54 smoothed APO values from manual exclude period 312.175524625233 to 312.176150111841" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item Read 29581 records [1] 4 2958 29581 [1] "done reading AO2" [1] 2009 2009 2009 2009 2009 2009 [1] 293 293 293 293 293 293 [1] 73301 73310 73320 73330 73340 73350 [1] "2009-10-20 20:21:41 UTC" "2009-10-20 20:21:50 UTC" [3] "2009-10-20 20:22:00 UTC" "2009-10-20 20:22:10 UTC" [5] "2009-10-20 20:22:20 UTC" "2009-10-20 20:22:30 UTC" [1] NA -267.19 -276.39 -270.38 -270.28 -259.94 [1] 25684 [1] "Average Date / Time for slice RF04 = 2009-11-08 00:26:00.01819014549255" [1] "sum(lsel) = 2199" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 19.13538 853.14990 [1] 19.13538 853.14990 [1] 146.8501 980.8646 [1] 7.533429e-03 9.999990e+05 [1] "highestmid = 670.383759" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO2 RF04 APO_AO2 range = -262.53,-189.95" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 29581 records [1] 4 2958 29581 [1] "done reading AO2" [1] 2009 2009 2009 2009 2009 2009 [1] 293 293 293 293 293 293 [1] 73301 73310 73320 73330 73340 73350 [1] "2009-10-20 20:21:41 UTC" "2009-10-20 20:21:50 UTC" [3] "2009-10-20 20:22:00 UTC" "2009-10-20 20:22:10 UTC" [5] "2009-10-20 20:22:20 UTC" "2009-10-20 20:22:30 UTC" [1] NA -505.60 -513.90 -507.22 -506.03 -494.42 [1] 25692 [1] "Average Date / Time for slice RF04 = 2009-11-08 00:26:00.01819014549255" [1] "sum(lsel) = 2199" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 19.13538 853.14990 [1] 19.13538 853.14990 [1] 146.8501 980.8646 [1] 7.533429e-03 9.999990e+05 [1] "highestmid = 670.383759" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO2 RF04 O2_AO2 range = -454.46,-387.58" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 29581 records [1] 4 2958 29581 [1] "done reading AO2" [1] 2009 2009 2009 2009 2009 2009 [1] 293 293 293 293 293 293 [1] 73301 73310 73320 73330 73340 73350 [1] "2009-10-20 20:21:41 UTC" "2009-10-20 20:21:50 UTC" [3] "2009-10-20 20:22:00 UTC" "2009-10-20 20:22:10 UTC" [5] "2009-10-20 20:22:20 UTC" "2009-10-20 20:22:30 UTC" [1] NA 395.548 395.067 395.126 394.694 394.812 [1] 25763 [1] "Average Date / Time for slice RF04 = 2009-11-08 00:25:16.2533097267151" [1] "sum(lsel) = 2266" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 19.13538 853.14990 [1] 19.13538 853.14990 [1] 146.8501 980.8646 [1] 7.533429e-03 9.999990e+05 [1] "highestmid = 670.383759" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO2 RF04 CO2_AO2 range = 385.26,388.17" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 15 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 15 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 15 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 15 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 15 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 15 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 15 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 15 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 15 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"