[1] "2025-05-13 11:15:52 MDT" options [1,] "file" "090123a" [2,] "flight" "RF08" [3,] "project" "HIPPO1" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "0" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "posttoonly" [48,] "o2caltype" "posttoonly" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "FALSE" [64,] "icartt" "0" [65,] "icarttrev" "0" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "090123a" [1] "Reading in flight and plotting intervals" Read 4 records [1] "Reading in /scr/raf/stephens/AO2DAT/090123a.mr" Read 11553 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.16 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.19 seconds" [1] "New JOGEST = 2.19 seconds" [1] "New VALVE SKIP = 27 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/090123a.hr" Read 46220 records [1] "HR FILE LENGTH NOT NSWITCH * MRDATA FILE LENGTH" [1] 11553 46217 [1] "HR FILE LENGTH NOT MULTIPLE OF NSWITCH" [1] 11553 46217 [1] "Converting hrdata statout" [1] "Tue May 13 11:15:52 AM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30055 description: HS CO2 = 324.38 O2 = -180.5" [1] "position 2 cylinder OK30057 description: LS CO2 = 400.71 O2 = -684.5" [1] "position 3 cylinder OK30053 description: LT CO2 = 405.42 O2 = -411.3" [1] "position 4 cylinder OK30054 description: WT CO2 = 383.78 O2 = -765.3" [1] 324.3752 400.7064 405.4197 383.7825 NA [1] -180.4864 -684.4707 -411.2592 -765.2951 NA [1] "Nominal linear calibrations:" [1] "co2scl = 0.956 co2off = 13.77 o2scla = -0.048 o2offa = -48" [1] "(dV/V)/(dXO2/XO2) = -4.366" [1] "(dV/V)/d(O2/N2) = -3.452" [1] "Reading in very high resolution timeseries" Read 231060 records [1] 231060 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 11:15:52 AM MDT 2025 done approxing mr variables" [1] "Tue May 13 11:15:54 AM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.452" [1] "o2scaleavenew_drelVdrelP = -4.366" [1] "median(o2scalenew) = -3.452" [1] "Empirical dV/V vs dP/P relationship =-3.873, r^2 =0.029, damping =0.887" [1] "Tue May 13 11:15:54 AM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "MASKING 20 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 11:16:24 AM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 1560405.75984 SECONDS" [1] "Tue May 13 11:16:24 AM MDT 2025 done recreating mr o2diffs" [1] "Removed 4 medium-rate record(s) with accumulation errors" [1] "Removed 354 medium-rate record(s) > eco or < ico" [1] "from: 1" [1] "to: 199" [1] "from: 11395" [1] "to: 11549" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 5874 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 388.147 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 376.181 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 377.139 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -43.524 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 12 [1] 122 [1] 141 [1] 141 [1] 143 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 16 23.87896 1381.6491970 996413.0 -1 [2,] 17 23.87899 1029.2335683 995021.8 1 [3,] 18 23.87902 680.8189558 995688.1 -1 [4,] 611 23.89612 232.2853028 999737.0 1 [5,] 612 23.89615 267.3032253 999892.1 -1 [6,] 613 23.89618 399.0707168 999448.8 1 [7,] 756 23.90055 362.3183925 1001019.1 -1 [8,] 758 23.90061 398.6936633 1001028.4 -1 [9,] 759 23.90064 868.0198106 1000615.9 1 [10,] 760 23.90067 1256.5191181 1001940.1 -1 [11,] 828 23.90275 1447.3151926 1002752.3 -1 [12,] 829 23.90278 577.7343725 1001304.4 1 [13,] 830 23.90281 -316.5509535 1000962.1 -1 [14,] 898 23.90487 -523.4268163 1001140.8 -1 [15,] 899 23.90490 -161.4140501 1001648.0 1 [16,] 900 23.90493 238.8521269 1001936.5 -1 [17,] 1076 23.91031 350.2464356 1001586.8 -1 [18,] 1078 23.91037 342.8321170 1001565.7 -1 [19,] 1079 23.91040 46.7608345 1001234.8 1 [20,] 1080 23.91044 -344.5757364 1000842.0 -1 [21,] 1082 23.91050 -515.9051246 1000610.2 -1 [22,] 1148 23.91252 -545.1199736 1000563.4 -1 [23,] 1149 23.91255 284.2437792 1001113.2 1 [24,] 1150 23.91258 1198.8476175 1002350.5 -1 [25,] 1220 23.91470 1659.0005562 1002839.3 -1 [26,] 1288 23.91672 1688.8505208 1002823.7 -1 [27,] 1289 23.91675 1198.2624860 1001077.2 1 [28,] 1290 23.91678 650.5263680 1001698.5 -1 [29,] 2022 23.93797 392.9847703 990560.1 -1 [30,] 2026 23.93807 423.5730497 990448.0 -1 [31,] 2027 23.93810 786.8049054 989977.5 1 [32,] 2028 23.93812 1205.3510388 991179.3 -1 [33,] 2096 23.93986 1413.8126559 989506.3 -1 [34,] 2097 23.93988 683.3055783 988055.1 1 [35,] 2098 23.93991 -133.2928744 987857.9 -1 [36,] 2100 23.93996 -487.3540418 987461.3 -1 [37,] 2166 23.94164 -606.2748244 985544.2 -1 [38,] 2167 23.94166 -200.1503297 986113.9 1 [39,] 2168 23.94169 257.0820635 986356.2 -1 [40,] 2479 23.95017 391.5507193 985433.0 1 [41,] 2480 23.95021 288.3156482 985853.7 -1 [42,] 2481 23.95023 251.4590222 985666.3 1 [43,] 3084 23.96565 410.3685367 994040.4 -1 [44,] 3088 23.96575 396.5160546 993984.6 -1 [45,] 3089 23.96577 83.3396224 993573.8 1 [46,] 3090 23.96580 -247.0030503 993279.7 -1 [47,] 3092 23.96585 -449.3116259 993045.5 -1 [48,] 3158 23.96753 -515.5044597 991857.9 -1 [49,] 3159 23.96756 283.8218146 992373.2 1 [50,] 3160 23.96758 1132.0157219 993499.7 -1 [51,] 3162 23.96763 1423.2022318 993748.8 -1 [52,] 3228 23.96930 1417.9687328 992528.7 -1 [53,] 3229 23.96932 1054.4452910 991098.6 1 [54,] 3230 23.96935 652.7524704 991704.8 -1 [55,] 4176 23.99336 353.6848887 999061.1 -1 [56,] 4180 23.99346 599.2656245 999159.3 -1 [57,] 4181 23.99348 1027.7168183 998485.3 1 [58,] 4182 23.99351 1430.1285898 999929.8 -1 [59,] 4250 23.99524 1118.4832298 998034.8 -1 [60,] 4251 23.99526 315.5497600 996954.1 1 [61,] 4252 23.99528 -395.0508387 996534.7 -1 [62,] 4320 23.99701 -208.8682075 995038.8 -1 [63,] 4321 23.99703 92.6910903 995209.7 1 [64,] 4322 23.99706 349.7776414 995583.0 -1 [65,] 5186 24.02106 471.4567523 1000779.6 -1 [66,] 5190 24.02116 199.4580346 1000412.9 -1 [67,] 5191 24.02118 -131.2337357 1000197.7 1 [68,] 5192 24.02121 -425.3419259 999735.7 -1 [69,] 5260 24.02293 -124.6554930 998829.0 -1 [70,] 5261 24.02296 556.8870218 998916.5 1 [71,] 5262 24.02298 1296.3919736 1000185.6 -1 [72,] 5330 24.02472 1287.9939244 998736.2 -1 [73,] 5331 24.02474 980.1481220 997424.2 1 [74,] 5332 24.02477 667.2645723 998083.5 -1 [75,] 5400 24.02648 872.3865045 997111.0 -1 [76,] 5401 24.02651 1263.9902889 996170.5 1 [77,] 5402 24.02653 1616.4478716 997823.8 -1 [78,] 5470 24.02826 1401.0727406 996492.9 -1 [79,] 5471 24.02828 966.7677836 995138.2 1 [80,] 5472 24.02830 584.6024668 995707.9 -1 [81,] 6273 24.04863 209.8501521 1004656.1 1 [82,] 6274 24.04866 263.5565411 1004843.7 -1 [83,] 6275 24.04868 361.5047094 1004453.1 1 [84,] 6276 24.04871 378.1878079 1004841.5 -1 [85,] 6280 24.04881 323.4349084 1004802.6 -1 [86,] 6281 24.04883 736.6000968 1004435.8 1 [87,] 6282 24.04886 1230.4539204 1005747.8 -1 [88,] 6350 24.05059 1500.5414083 1005144.9 -1 [89,] 6351 24.05061 801.7377551 1003611.7 1 [90,] 6352 24.05064 28.1925789 1003553.4 -1 [91,] 6354 24.05069 -393.1999941 1003139.4 -1 [92,] 6420 24.05236 -474.1339238 1002057.2 -1 [93,] 6421 24.05238 -120.4467995 1002511.3 1 [94,] 6422 24.05241 230.2116196 1002770.5 -1 [95,] 7697 24.08821 328.3557039 1000611.2 1 [96,] 7698 24.08824 384.2258530 1000930.4 -1 [97,] 7699 24.08827 459.3852593 1000401.0 1 [98,] 7823 24.09205 538.9927181 999455.7 -1 [99,] 7827 24.09217 425.4961853 999340.9 -1 [100,] 7828 24.09220 0.7006473 998924.0 1 [101,] 7829 24.09223 -419.7051773 998526.8 -1 [102,] 7897 24.09430 -204.5943656 1000401.6 -1 [103,] 7898 24.09433 618.5729404 1000602.5 1 [104,] 7899 24.09436 1419.3792762 1002073.0 -1 [105,] 7967 24.09642 1397.3286577 1004320.0 -1 [106,] 7968 24.09645 959.2012515 1002942.1 1 [107,] 7969 24.09648 589.3699547 1003590.7 -1 [108,] 8865 24.11974 503.3079314 1003612.5 -1 [109,] 8869 24.11985 751.9651964 1003910.4 -1 [110,] 8870 24.11988 1105.2812783 1003074.3 1 [111,] 8871 24.11990 1424.8613982 1004494.7 -1 [112,] 8937 24.12157 1452.7915112 1004424.2 -1 [113,] 8938 24.12160 1323.5801492 1002949.2 1 [114,] 8939 24.12163 974.3849636 1003810.0 -1 [115,] 8940 24.12165 294.4013908 1002841.2 1 [116,] 8941 24.12168 -377.4314080 1002470.7 -1 [117,] 9009 24.12341 -181.1075010 1002196.6 -1 [118,] 9010 24.12343 191.5313407 1002340.2 1 [119,] 9011 24.12346 513.4856318 1002892.4 -1 [120,] 9959 24.14750 438.1313629 1002683.0 -1 [121,] 9960 24.14752 82.7097096 1002238.2 1 [122,] 9961 24.14755 -284.7620172 1001913.2 -1 [123,] 9963 24.14760 -478.7284334 1001662.4 -1 [124,] 10029 24.14928 -482.6125656 1000572.0 -1 [125,] 10030 24.14931 312.7537553 1001065.4 1 [126,] 10031 24.14933 1161.7732761 1002291.7 -1 [127,] 10169 24.15282 1804.8667720 1000587.0 -1 [128,] 10170 24.15284 1297.4967950 998802.5 1 [129,] 10171 24.15287 745.7063794 999531.6 -1 [130,] 11047 24.17509 570.6479434 1000406.4 -1 [131,] 11051 24.17519 493.8493906 1000377.0 -1 [132,] 11052 24.17522 844.4669430 999891.3 1 [133,] 11053 24.17524 1177.3786004 1001170.0 -1 [134,] 11055 24.17529 1415.7199207 1001398.0 -1 [135,] 11121 24.17697 1541.1982651 1001311.8 -1 [136,] 11122 24.17700 812.2098671 999730.8 1 [137,] 11123 24.17703 37.2974274 999696.1 -1 [138,] 11125 24.17708 -386.5337663 999265.9 -1 [139,] 11191 24.17886 -155.5610508 999687.2 -1 [140,] 11192 24.17889 6.6893174 999909.9 1 [141,] 11193 24.17893 166.0050617 1000592.4 -1 [142,] 11194 24.17896 1264.4437427 999956.9 1 [143,] 11195 24.17899 2088.0273912 1000623.3 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 726 23.89964 9.755970e+11 [2,] 3141 23.96710 8.130277e+04 [3,] 4845 24.01179 9.710093e+04 [4,] 5484 24.02861 9.730970e+11 [5,] 7206 24.07368 9.687500e+24 [6,] 9489 24.13558 1.005834e+04 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) -339.466 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 106.641 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 91.188 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -43.524 PER MEG" [1] 324.3752 400.7064 405.4197 383.7825 NA [1] -180.4864 -684.4707 -411.2592 -765.2951 NA [1] "Nominal linear calibrations:" [1] "co2scl = 0.958 co2off = 13.12 o2scla = -0.048 o2offa = -48.4" [1] "(dV/V)/(dXO2/XO2) = -4.361" [1] "(dV/V)/d(O2/N2) = -3.448" [1] "Finding cal and sample periods" [1] "Median Cal: 2.53 minutes" [1] "Average Cal: 2.58 minutes" [1] "Shortest Cal: 0.44 minutes" [1] "Longest Cal: 3.04 minutes" [1] "Removed 1 calibration period(s) with less than 30 seconds of data" [1] "at: 1" [1] "Reading in aircraft data" [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.00434" [1] "HS CO2 vs. PACAB: m = -0.00439, r^2 = 0.46" [1] "LS CO2 vs. PACAB: m = -0.0043, r^2 = 0.57" [1] "HS+LS LIH2O vs. PACAB: m = 4.04e-05" [1] "HS LIH2O vs. PACAB: m = 4.92e-05, r^2 = 0.44" [1] "LS LIH2O vs. PACAB: m = 3.16e-05, r^2 = 0.2" [1] "HS+LS CO2 vs. LIH2O: m = 14.3" [1] "HS CO2 vs. LIH2O: m = -4.36, r^2 = 0" [1] "LS CO2 vs. LIH2O: m = 33.1, r^2 = 0.25" [1] "APCO2 vs. PACAB: m = -0.000658, r^2 = 0" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 0.503" [1] "HS O2 vs. PACAB: m = 0.609, r^2 = 0.7" [1] "LS O2 vs. PACAB: m = 0.397, r^2 = 0.2" [1] "HS+LS O2 vs. LIH2O: m = 6740" [1] "HS O2 vs. LIH2O: m = 5700, r^2 = 0.48" [1] "LS O2 vs. LIH2O: m = 7770, r^2 = 0.55" [1] "HS+LS O2 vs. PAO2: m = 1.59" [1] "HS O2 vs. PAO2: m = -46.4, r^2 = 0.18" [1] "LS O2 vs. PAO2: m = 49.6, r^2 = 0.07" [1] "HS+LS O2 vs. TPBOX: m = 8.43" [1] "HS O2 vs. TPBOX: m = 11.1, r^2 = 0.84" [1] "LS O2 vs. TPBOX: m = 5.77, r^2 = 0.09" [1] "APO vs. PACAB: m = 0.0114, r^2 = 0" [1] "APO vs. PAO2: m = 8.46, r^2 = 0" [1] "APO vs. TPBOX: m = -3.06, r^2 = 0" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 4.12, r^2 = 0.05" [1] "LS CO2 vs. LiCor Cell P: m = -3.33, r^2 = 0.07" [1] "HS CO2 vs. CO2 Vol P: m = 0.67, r^2 = 0.26" [1] "LS CO2 vs. CO2 Vol P: m = 0.251, r^2 = 0.05" [1] "HS CO2 vs. SLOPE: m = -0.369, r^2 = 0.2" [1] "LS CO2 vs. SLOPE: m = -0.157, r^2 = 0.02" [1] "HS O2 vs. O2 Vol P: m = -48.8, r^2 = 0.14" [1] "LS O2 vs. O2 Vol P: m = 46.6, r^2 = 0.07" [1] "HS O2 vs. O2 Cell T: m = 5.54, r^2 = 0.01" [1] "LS O2 vs. O2 Cell T: m = -15.5, r^2 = 0.03" [1] "HS O2 vs. CO2 Vol P: m = -85.4, r^2 = 0.34" [1] "LS O2 vs. CO2 Vol P: m = 36.7, r^2 = 0.05" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = -2.3, r^2 = 0.04" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = -0.539, r^2 = 0.01" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -85.4, r^2 = 0.34" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = 36.7, r^2 = 0.05" [1] "HS O2 vs. LIH2O: m = 5410, r^2 = 0.38" [1] "LS O2 vs. LIH2O: m = 5180, r^2 = 0.2" [1] "HS O2 vs. SLOPE: m = -0.491, r^2 = 0.29" [1] "LS O2 vs. SLOPE: m = -1.88, r^2 = 0.6" [1] "HS CO2 vs. Time: m = 6.511, r^2 = 0.94" [1] "LS CO2 vs. Time: m = 6.768, r^2 = 0.95" [1] "HS CO2 vs. Cylinder T: m = 0.448, r^2 = 0.08" [1] "LS CO2 vs. Cylinder T: m = 0.301, r^2 = 0.041" [1] "HS CO2 vs. Regulator T: m = -0.532, r^2 = 0.83" [1] "LS CO2 vs. Regulator T: m = -0.307, r^2 = 0.371" [1] "HS CO2 vs. Ref. Volumes T: m = 0.766, r^2 = 0.09" [1] "LS CO2 vs. Ref. Volumes T: m = -0.23, r^2 = 0.015" [1] "HS CO2 vs. Manifold T: m = -0.207, r^2 = 0.18" [1] "LS CO2 vs. Manifold T: m = -0.156, r^2 = 0.103" [1] "HS CO2 vs. Pump Box T: m = -0.08, r^2 = 0.52" [1] "LS CO2 vs. Pump Box T: m = -0.089, r^2 = 0.48" [1] "HS O2 vs. Cylinder T: m = -90.705, r^2 = 0.25" [1] "LS O2 vs. Cylinder T: m = -4.787, r^2 = 0.001" [1] "HS O2 vs. Regulator T: m = 49.328, r^2 = 0.56" [1] "LS O2 vs. Regulator T: m = 3.993, r^2 = 0.003" [1] "HS O2 vs. Ref. Volumes T: m = -106.578, r^2 = 0.14" [1] "LS O2 vs. Ref. Volumes T: m = -56.875, r^2 = 0.046" [1] "HS O2 vs. Manifold T: m = 34.603, r^2 = 0.39" [1] "LS O2 vs. Manifold T: m = -2.134, r^2 = 0.001" [1] "HS O2 vs. Pump Box T: m = 11.228, r^2 = 0.81" [1] "LS O2 vs. Pump Box T: m = 5.381, r^2 = 0.087" [1] "HS CO2 vs. WT P: m = -0.004, r^2 = 0.47" [1] "LS CO2 vs. WT P: m = -0.004, r^2 = 0.585" [1] "HS CO2 vs. SP P: m = -0.00577, r^2 = 0.67" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.019, r^2 = 0.69" [1] "HS CO2 vs. SP P comb with PACAB: m = -0.026, r^2 = 0.69" [1] "LS CO2 vs. SP P: m = -0.00515, r^2 = 0.72" [1] "LS CO2 vs. PACAB comb with SP P: m = 0.022, r^2 = 0.76" [1] "LS CO2 vs. SP P comb with PACAB: m = -0.028, r^2 = 0.76" [1] "HS CO2 vs. WT FL: m = -0.146, r^2 = 0.14" [1] "LS CO2 vs. WT FL: m = -0.151, r^2 = 0.152" [1] "HS CO2 vs. SP FL: m = 0.085, r^2 = 0.3" [1] "LS CO2 vs. SP FL: m = 0.091, r^2 = 0.393" [1] "HS O2 vs. SLPDIFF: m = 0.116, r^2 = 0.01" [1] "LS O2 vs. SLPDIFF: m = 0.24, r^2 = 0.028" [1] "HS O2 vs. WT P: m = 0.535, r^2 = 0.52" [1] "LS O2 vs. WT P: m = 0.265, r^2 = 0.113" [1] "HS O2 vs. SP P: m = 0.615, r^2 = 0.56" [1] "LS O2 vs. SP P: m = 0.281, r^2 = 0.117" [1] "HS O2 vs. WT FL: m = 6.618, r^2 = 0.02" [1] "LS O2 vs. WT FL: m = -22.721, r^2 = 0.172" [1] "HS O2 vs. SP FL: m = -11.635, r^2 = 0.45" [1] "LS O2 vs. SP FL: m = -10.27, r^2 = 0.247" [1] "Plotting calibration shapes" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.63" [1] "Median all HS CO2 SD = 0.6" [1] "Median all LS CO2 SD = 0.61" [1] "Median all LT CO2 SD = 0.67" [1] "Median all WT CO2 SD = 0.67" [1] "Median all HS or LS CO2 SD = 0.61" [1] "Median all cal O2 SD = 8.26" [1] "Median all HS O2 SD = 8.26" [1] "Median all LS O2 SD = 8.75" [1] "Median all LT O2 SD = 9.54" [1] "Median all WT O2 SD = 6.68" [1] "Median all HS or LS O2 SD = 8.74" [1] "Median all cal CO2 Slope = 0" [1] "Median all HS CO2 Slope = -0.08" [1] "Median all LS CO2 Slope = 0.01" [1] "Median all LT CO2 Slope = 0.27" [1] "Median all WT CO2 Slope = 0.16" [1] "Median all HS or LS CO2 Slope = -0.02" [1] "Median all cal O2 Slope = 1.86" [1] "Median all HS O2 Slope = 0.25" [1] "Median all LS O2 Slope = 1.86" [1] "Median all LT O2 Slope = 3.43" [1] "Median all WT O2 Slope = -1.09" [1] "Median all HS or LS O2 Slope = 1.71" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 9.53 per meg" [1] "Initial O2 Calibration Offset = 12.78 per meg" [1] "SD of O2 Calibration (post-takeoff) = 9.53 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = 12.78 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using HIPPO1-2 inlet volumes" [1] "before any lag: 75902.92 101864.56" [1] "Time lag adjustments = 0 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 38.2 at 109.1 sccm" [1] "Median O2 delay + tlagff = 39.1 at 109.1 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 36.9 at 109.1 sccm" [1] "Median O2 delay from 3-way + tlagff = 37.8 at 109.1 sccm" [1] "after calc and ff lag: 75863.15 101823.88" [1] "2025-05-13 11:17:09 MDT" [1] "Calculating 1-sec interpolated values" [1] "Screened 59 1-Hz values because of data gaps at:" [1] 23.87731 23.87733 23.87734 23.87735 23.87736 23.87737 23.87738 23.87740 [9] 23.87741 23.87742 23.87743 23.87744 23.87745 23.87747 23.87748 23.87749 [17] 23.87750 23.87751 23.87752 23.87753 23.87755 23.87756 23.87757 23.87758 [25] 23.87759 23.87760 23.87762 23.87763 23.87764 23.87765 23.87766 23.87767 [33] 23.87769 23.87770 23.87771 23.87772 23.87773 23.87774 23.87775 23.87777 [41] 23.87778 23.87779 23.87780 23.87781 23.87782 23.87784 23.87785 23.87786 [49] 23.87787 23.87788 23.87789 23.87791 23.87792 23.87793 23.87794 23.87795 [57] 23.87796 23.87797 23.87799 [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] NA NA NA NA NA [6] NA NA NA NA NA [11] NA NA NA NA NA [16] NA NA NA NA NA [21] NA NA NA NA NA [26] NA NA NA NA NA [31] NA NA NA NA NA [36] NA NA NA NA NA [41] NA NA NA NA NA [46] NA NA NA NA NA [51] NA NA NA NA NA [56] NA NA NA NA NA [61] NA NA NA NA NA [66] NA NA NA NA NA [71] NA NA NA NA NA [76] NA NA NA NA NA [81] NA NA NA NA NA [86] NA NA NA NA NA [91] NA NA NA NA NA [96] NA NA NA NA NA [101] NA NA NA NA NA [106] NA NA NA 21.707676025 21.707676025 [111] 21.740020502 23.508023758 24.265803765 23.048829538 23.009999336 [116] 22.632549262 21.718245712 17.625168782 17.625168782 15.575579363 [121] 12.092324714 15.571963943 16.994901709 14.990010614 10.069204191 [126] 10.069204191 5.742804351 5.742804351 16.910385181 19.871956858 [131] 20.393071077 22.357457024 20.004733146 14.632283775 14.632283775 [136] 19.953908051 20.239084005 20.639057776 20.848331306 18.660091839 [141] 13.290568887 13.576309672 13.709346654 13.709346654 18.600546497 [146] 20.440689775 20.440689775 20.440689775 20.434360206 23.787033425 [151] 23.779639845 23.779639845 23.779639845 8.453734568 7.909951215 [156] 7.909951215 8.268919832 9.258015639 14.465856369 14.816903638 [161] 14.816903638 13.697074282 14.902844588 15.289398882 15.289398882 [166] 12.818784142 -1.247814041 2.838769189 2.838769189 2.838769189 [171] 9.100408381 15.380289210 13.697248430 13.697248430 14.284939152 [176] 17.736216685 12.408980400 12.410501737 12.423783614 12.770975659 [181] 11.067648026 7.944246963 7.810103340 7.548523096 7.531484641 [186] 28.868241516 28.859097272 27.833084560 27.670912695 27.172185304 [191] 16.097372885 15.974208037 15.870348855 15.870348855 9.924175408 [196] 7.651046671 15.732991112 15.825694545 15.825694545 25.005034469 [201] 20.489355715 17.891317181 17.891317181 14.622750307 15.813750140 [206] 18.997271085 18.997271085 18.997271085 14.622394959 13.654180006 [211] 13.654180006 13.654180006 13.271751441 7.690431597 7.690431597 [216] 7.690431597 7.690431597 24.492035825 26.149772209 26.149772209 [221] 26.149772209 21.233141973 4.579597206 4.579597206 4.579597206 [226] 3.778164057 12.362445511 11.741519938 11.741519938 14.158919473 [231] 17.692137744 5.804006359 5.804006359 5.804006359 -0.005006871 [236] 3.065776924 3.065776924 3.065776924 4.306124793 9.493350300 [241] -5.808931562 -5.808931562 -8.579564634 -8.468513657 -1.261160421 [246] 7.224732454 7.697655564 7.276944589 3.291823032 3.200388604 [251] 2.061255229 2.316269137 2.490599133 2.492032682 3.809055515 [256] -5.470673687 -6.311868221 -9.013141274 -5.821002256 3.497375970 [261] 3.497375970 2.153676416 -4.542452628 -10.408428174 -10.408428174 [266] 8.929321499 11.721418273 11.904445704 11.904445704 -4.484576946 [271] -3.910995073 -3.830079400 -3.922275783 -0.869943564 -0.869943564 [276] -0.869943564 1.160300767 3.833232029 3.833232029 3.833232029 [281] 19.350757733 21.826495035 21.826495035 18.873014604 -1.340049809 [286] -1.340049809 -1.266182758 -0.993406588 2.278649206 2.278649206 [291] 3.636240810 5.213443230 4.856490248 5.086434903 8.568020923 [296] 7.798188790 3.715110977 4.253621938 7.567029831 6.513632534 [301] 6.150895663 3.706551893 2.295626532 11.979500129 11.979500129 [306] 3.373919202 2.001692297 11.296284072 11.007129006 8.722063531 [311] 6.814748158 -4.021360694 -3.956336692 -3.887816499 -3.042126940 [316] 0.137934361 4.399481200 5.394907538 2.342827186 -4.947289353 [321] -5.597171698 -5.597171698 -7.839043958 0.650028212 0.650028212 [326] 0.650028212 -7.034036915 -8.486159911 -8.486159911 -7.285848451 [331] 1.685534948 1.685534948 1.602840281 -2.546812032 -13.487855271 [336] -13.487855271 -11.449170015 -1.701235026 3.577062627 3.577062627 [341] -0.444672567 -0.436881538 -0.436881538 -0.436881538 2.307382253 [346] -2.300217392 [1] 81.09126 84.66816 89.94116 94.46942 98.65232 102.15067 104.60664 [8] 105.80877 106.85498 108.07257 109.42076 110.61526 112.21160 114.58542 [15] 117.33618 120.56043 124.16061 127.79217 132.33873 136.29466 139.59409 [22] 142.18412 144.33195 146.33198 148.43367 150.31811 152.21135 154.07496 [29] 156.40983 158.78436 160.80311 162.78568 164.86121 166.92215 168.85486 [36] 170.88784 172.70938 175.10772 177.15674 179.27818 181.37921 183.62173 [43] 185.59711 187.83671 189.99830 192.05042 194.20485 196.05638 198.12274 [50] 200.23554 202.56962 204.27309 205.92781 207.49973 208.89296 210.45845 [57] 212.12054 213.62393 215.30478 216.70228 218.30050 219.90022 221.55712 [64] 223.16412 224.79609 226.48510 228.31924 230.32746 231.78040 233.66120 [71] 235.17113 236.78431 238.49443 240.14135 241.78191 243.41261 245.04844 [78] 246.64821 248.20653 249.94678 251.48670 253.14769 254.67536 256.25838 [85] 257.90353 259.45174 260.95705 262.44779 263.93196 265.47961 266.78481 [92] 268.54707 270.35786 271.83013 273.80529 275.23835 276.80439 278.21839 [99] 279.82421 281.48814 283.05389 284.57942 286.10133 287.56402 289.04589 [106] 290.44944 292.12741 293.63422 295.24278 296.65182 298.23981 299.59206 [113] 301.26474 302.67785 304.30448 305.58175 307.09007 308.56439 310.21967 [120] 311.57870 313.20714 315.04625 316.55777 318.23133 319.66475 321.20244 [127] 322.66377 324.24087 325.53423 326.84210 328.24214 329.84933 331.39745 [134] 332.84832 334.26150 335.75055 337.09896 338.54321 340.08160 341.54760 [141] 342.84927 344.33007 345.87997 347.42701 348.94072 350.41289 351.79936 [148] 353.32582 354.65829 356.25956 357.67115 359.14625 360.69454 362.14527 [155] 363.57747 365.00452 366.44354 367.66630 369.08208 370.45130 371.84620 [162] 373.24195 374.62555 376.08341 377.57657 378.93652 380.24733 381.57814 [169] 382.90563 384.30179 385.41810 387.01153 388.34272 389.75593 391.10756 [176] 392.47316 394.23547 395.54228 396.92511 398.16511 399.47709 400.82638 [183] 402.05885 403.45871 404.79376 406.11550 407.48702 408.72429 410.04954 [190] 411.44833 412.75062 414.05162 415.44772 416.73770 417.95582 419.25375 [197] 420.62229 421.91265 423.24554 424.55728 425.88571 427.11458 428.51376 [204] 429.69825 431.35385 432.62349 433.77977 435.13464 436.34344 437.60910 [211] 438.92738 440.17273 441.41160 442.74180 443.86645 445.09761 446.44106 [218] 447.55406 448.84198 450.04681 451.13109 452.49682 453.68578 454.89439 [225] 455.88709 457.32028 458.51708 459.73278 460.96784 462.21568 463.34971 [232] 464.88049 466.09206 467.27063 468.54943 469.68544 470.80670 471.96683 [239] 473.22333 474.47723 475.59609 476.83082 480.50981 481.94301 483.42408 [246] 484.81821 486.29123 487.70319 489.12065 490.50903 491.86112 493.33106 [253] 494.80962 496.15586 497.85109 499.11901 500.59752 502.03738 503.36264 [260] 504.72860 506.23837 507.46115 508.80797 510.17491 511.58574 512.92668 [267] 514.26342 515.50763 516.85499 518.08080 519.19790 520.57060 522.05739 [274] 523.50411 524.85626 526.09210 527.49937 528.93643 530.31131 531.63167 [281] 532.83352 534.21030 535.57767 536.84358 538.12007 539.36942 540.78816 [288] 541.93735 543.31365 544.61344 545.89166 547.21949 548.51221 549.69205 [295] 551.10176 552.27840 553.58026 554.79236 556.04410 557.25374 558.75533 [302] 560.01354 561.17191 562.40236 563.67750 564.94406 566.13598 567.38558 [309] 568.66975 569.92271 571.20170 572.40644 573.58553 574.80801 576.01949 [316] 577.19855 578.45299 579.60592 580.75372 582.06782 583.23001 584.40542 [323] 585.65046 587.02346 588.19809 589.36182 590.63536 591.76985 592.98485 [330] 594.14772 595.35756 596.53455 597.65618 598.79413 600.09406 601.19019 [337] 602.34563 603.39667 604.65632 605.72077 606.96929 608.09358 609.17506 [344] 610.29265 611.50876 612.62485 [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item Read 25871 records [1] 8 2587 25871 [1] "done reading AO2" [1] 2009 2009 2009 2009 2009 2009 [1] 9 9 9 9 9 9 [1] 73462 73470 73480 73490 73500 73510 [1] "2009-01-09 20:24:22 UTC" "2009-01-09 20:24:30 UTC" [3] "2009-01-09 20:24:40 UTC" "2009-01-09 20:24:50 UTC" [5] "2009-01-09 20:25:00 UTC" "2009-01-09 20:25:10 UTC" [1] -325.69 -324.18 -320.39 -293.97 -292.22 -283.00 [1] 21175 [1] "Average Date / Time for slice RF08 = 2009-01-24 00:44:18.2127029895782" [1] "sum(lsel) = 2031" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 10.41058 812.77298 [1] 10.41058 812.77298 [1] 187.2270 989.5894 [1] 5.022343e-02 9.999990e+05 [1] "highestmid = 671.495605" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO1 RF08 APO_AO2 range = -222.82,-167.34" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 25871 records [1] 8 2587 25871 [1] "done reading AO2" [1] 2009 2009 2009 2009 2009 2009 [1] 9 9 9 9 9 9 [1] 73462 73470 73480 73490 73500 73510 [1] "2009-01-09 20:24:22 UTC" "2009-01-09 20:24:30 UTC" [3] "2009-01-09 20:24:40 UTC" "2009-01-09 20:24:50 UTC" [5] "2009-01-09 20:25:00 UTC" "2009-01-09 20:25:10 UTC" [1] -609.44 -603.36 -588.97 -534.79 -510.39 -496.66 [1] 21185 [1] "Average Date / Time for slice RF08 = 2009-01-24 00:44:18.2127029895782" [1] "sum(lsel) = 2031" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 10.41058 812.77298 [1] 10.41058 812.77298 [1] 187.2270 989.5894 [1] 5.022343e-02 9.999990e+05 [1] "highestmid = 671.495605" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO1 RF08 O2_AO2 range = -410.02,-356.67" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 25871 records [1] 8 2587 25871 [1] "done reading AO2" [1] 2009 2009 2009 2009 2009 2009 [1] 9 9 9 9 9 9 [1] 73462 73470 73480 73490 73500 73510 [1] "2009-01-09 20:24:22 UTC" "2009-01-09 20:24:30 UTC" [3] "2009-01-09 20:24:40 UTC" "2009-01-09 20:24:50 UTC" [5] "2009-01-09 20:25:00 UTC" "2009-01-09 20:25:10 UTC" [1] 403.897 403.019 401.176 396.714 391.797 390.968 [1] 21191 [1] "Average Date / Time for slice RF08 = 2009-01-24 00:44:14.9362120628357" [1] "sum(lsel) = 2038" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] 10.41058 812.77298 [1] 10.41058 812.77298 [1] 187.2270 989.5894 [1] 5.022343e-02 9.999990e+05 [1] "highestmid = 671.495605" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO1 RF08 CO2_AO2 range = 383.75,386.5" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 8 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 8 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 8 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"