[1] "2025-05-13 11:09:32 MDT" options [1,] "file" "090116a" [2,] "flight" "RF05" [3,] "project" "HIPPO1" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "0" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "TRUE" [26,] "vxavail" "TRUE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "posttoonly" [48,] "o2caltype" "posttoonly" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "FALSE" [64,] "icartt" "0" [65,] "icarttrev" "0" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "090116a" [1] "Reading in flight and plotting intervals" Read 23 records [1] "Reading in /scr/raf/stephens/AO2DAT/090116a.mr" Read 11051 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.16 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.21 seconds" [1] "New JOGEST = 2.21 seconds" [1] "New VALVE SKIP = 27 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/090116a.hr" Read 44208 records [1] "HR FILE LENGTH NOT NSWITCH * MRDATA FILE LENGTH" [1] 11051 44206 [1] "HR FILE LENGTH NOT MULTIPLE OF NSWITCH" [1] 11051 44206 [1] "Converting hrdata statout" [1] "Tue May 13 11:09:32 AM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30055 description: HS CO2 = 324.38 O2 = -177" [1] "position 2 cylinder OK30057 description: LS CO2 = 400.7 O2 = -682.9" [1] "position 3 cylinder OK30053 description: LT CO2 = 405.42 O2 = -409.3" [1] "position 4 cylinder OK170199 description: WT CO2 = 384.87 O2 = -795.3" [1] 324.3789 400.7020 405.4180 384.8695 NA [1] -177.0385 -682.8940 -409.2660 -795.2715 NA [1] "Nominal linear calibrations:" [1] "co2scl = 0.629 co2off = 146.64 o2scla = -0.051 o2offa = -45.8" [1] "(dV/V)/(dXO2/XO2) = -4.086" [1] "(dV/V)/d(O2/N2) = -3.23" [1] "Reading in very high resolution timeseries" Read 221020 records [1] 221020 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 11:09:33 AM MDT 2025 done approxing mr variables" [1] "Tue May 13 11:09:35 AM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.23" [1] "o2scaleavenew_drelVdrelP = -4.086" [1] "median(o2scalenew) = -3.233" [1] "Empirical dV/V vs dP/P relationship =-3.212, r^2 =0.001, damping =0.786" [1] "Tue May 13 11:09:35 AM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "Plotting Jog Shapes" [1] "Tue May 13 11:10:06 AM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 731279.14992 SECONDS" [1] "Tue May 13 11:10:06 AM MDT 2025 done recreating mr o2diffs" [1] "Removed 2 medium-rate record(s) with accumulation errors" [1] "Removed 111 medium-rate record(s) > eco or < ico" [1] "from: 10939" [1] "to: 11049" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 2180 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 1111.332 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 1125.384 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 1124.368 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 37.53 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 95 [1] 203 [1] 234 [1] 234 [1] 242 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 2 16.86908 1.897733e+03 949069.8 1 [2,] 3 16.86912 1.889146e+03 951005.6 -1 [3,] 4 16.86915 1.878187e+03 949317.6 1 [4,] 5 16.86918 1.862653e+03 951217.5 -1 [5,] 6 16.86922 1.867340e+03 949535.9 1 [6,] 7 16.86925 1.864794e+03 951441.9 -1 [7,] 10 16.86934 1.884499e+03 949923.6 1 [8,] 11 16.86937 1.900665e+03 951842.8 -1 [9,] 12 16.86941 1.905125e+03 950126.7 1 [10,] 13 16.86943 1.884185e+03 952052.2 -1 [11,] 14 16.86947 1.873560e+03 950347.1 1 [12,] 15 16.86950 1.871082e+03 952247.6 -1 [13,] 16 16.86953 1.872950e+03 950550.9 1 [14,] 17 16.86956 1.868439e+03 952460.4 -1 [15,] 18 16.86960 1.890722e+03 950773.2 1 [16,] 19 16.86963 1.904354e+03 952707.8 -1 [17,] 20 16.86966 1.901289e+03 950987.4 1 [18,] 21 16.86969 1.879490e+03 952918.5 -1 [19,] 22 16.86972 1.865827e+03 951184.8 1 [20,] 23 16.86975 1.857648e+03 953086.0 -1 [21,] 24 16.86979 1.881183e+03 951394.9 1 [22,] 25 16.86982 1.904280e+03 953343.0 -1 [23,] 26 16.86986 1.893766e+03 951624.6 1 [24,] 28 16.86992 1.854917e+03 951814.9 1 [25,] 29 16.86995 1.851003e+03 953705.8 -1 [26,] 30 16.86999 1.849249e+03 952023.1 1 [27,] 33 16.87008 1.893745e+03 954110.7 -1 [28,] 34 16.87013 1.949146e+03 952391.7 1 [29,] 35 16.87016 1.918313e+03 954357.6 -1 [30,] 36 16.87019 1.860724e+03 952645.5 1 [31,] 37 16.87022 1.833098e+03 954517.7 -1 [32,] 38 16.87026 1.858707e+03 952845.8 1 [33,] 39 16.87029 1.878796e+03 954753.5 -1 [34,] 40 16.87032 1.884997e+03 953047.2 1 [35,] 41 16.87035 1.881274e+03 954968.1 -1 [36,] 42 16.87038 1.880091e+03 953256.2 1 [37,] 43 16.87042 1.852733e+03 955168.0 -1 [38,] 44 16.87045 1.832710e+03 953482.2 1 [39,] 47 16.87055 1.920262e+03 955597.2 -1 [40,] 48 16.87058 1.914838e+03 953829.8 1 [41,] 49 16.87061 1.893658e+03 955768.2 -1 [42,] 50 16.87064 1.891435e+03 954035.1 1 [43,] 54 16.87077 1.855663e+03 954425.0 1 [44,] 55 16.87080 1.836921e+03 956283.7 -1 [45,] 56 16.87084 1.838286e+03 954629.2 1 [46,] 57 16.87087 1.849817e+03 956516.0 -1 [47,] 58 16.87090 1.867330e+03 954800.2 1 [48,] 59 16.87093 1.877427e+03 956743.3 -1 [49,] 60 16.87097 1.917522e+03 955053.4 1 [50,] 61 16.87101 1.966523e+03 957033.7 -1 [51,] 62 16.87105 1.905598e+03 955202.6 1 [52,] 63 16.87109 1.832321e+03 957086.6 -1 [53,] 64 16.87112 1.841633e+03 955411.4 1 [54,] 65 16.87116 1.888578e+03 957370.5 -1 [55,] 66 16.87120 1.895016e+03 955682.3 1 [56,] 67 16.87123 1.877987e+03 957605.0 -1 [57,] 68 16.87126 1.880109e+03 955887.2 1 [58,] 69 16.87129 1.886414e+03 957809.6 -1 [59,] 70 16.87133 1.892333e+03 956102.5 1 [60,] 71 16.87136 1.853736e+03 958019.4 -1 [61,] 72 16.87139 1.804548e+03 956318.2 1 [62,] 75 16.87148 1.714777e+03 958200.7 -1 [63,] 76 16.87152 7.546786e+02 956647.0 1 [64,] 77 16.87155 -2.385404e+02 956506.8 -1 [65,] 85 16.87180 -3.476489e+02 957133.3 -1 [66,] 88 16.87190 -3.757460e+02 957698.1 1 [67,] 89 16.87193 -3.876865e+02 957462.9 -1 [68,] 90 16.87196 -3.958996e+02 957920.7 1 [69,] 98 16.87222 -3.493133e+02 958486.0 1 [70,] 99 16.87225 -4.288777e+02 958204.0 -1 [71,] 100 16.87228 -4.482349e+02 958756.4 1 [72,] 102 16.87234 -3.173114e+02 958777.4 1 [73,] 103 16.87237 -3.510317e+02 958577.7 -1 [74,] 104 16.87240 -4.248817e+02 959111.0 1 [75,] 105 16.87243 -4.491578e+02 958922.3 -1 [76,] 106 16.87247 -3.493346e+02 959398.8 1 [77,] 109 16.87256 -4.515513e+02 958888.6 -1 [78,] 112 16.87266 -3.311298e+02 959540.9 1 [79,] 113 16.87269 -3.903243e+02 959375.2 -1 [80,] 114 16.87272 -4.540896e+02 959906.2 1 [81,] 118 16.87285 -4.191461e+02 959931.9 1 [82,] 119 16.87288 -3.975133e+02 959660.3 -1 [83,] 120 16.87291 -3.631275e+02 960177.3 1 [84,] 121 16.87294 -3.786285e+02 960035.3 -1 [85,] 122 16.87297 -4.292982e+02 960538.0 1 [86,] 129 16.87319 -4.052533e+02 960677.4 -1 [87,] 140 16.87354 -4.338952e+02 961620.5 1 [88,] 141 16.87357 -4.543067e+02 961350.4 -1 [89,] 142 16.87360 -4.361231e+02 961857.2 1 [90,] 145 16.87369 -1.702771e+02 961737.9 -1 [91,] 146 16.87372 5.298523e+02 961890.0 1 [92,] 147 16.87376 1.306876e+03 963200.6 -1 [93,] 149 16.87382 1.409909e+03 963427.9 -1 [94,] 156 16.87405 1.480292e+03 962484.0 1 [95,] 157 16.87408 1.448276e+03 964003.0 -1 [96,] 158 16.87411 1.415168e+03 962710.2 1 [97,] 164 16.87430 1.547236e+03 962942.9 1 [98,] 165 16.87433 1.480713e+03 964511.5 -1 [99,] 166 16.87436 1.413143e+03 963172.5 1 [100,] 197 16.87534 1.577302e+03 965990.3 -1 [101,] 201 16.87548 1.448865e+03 966197.1 -1 [102,] 215 16.87591 1.323727e+03 966612.7 -1 [103,] 216 16.87595 1.007880e+03 965336.3 1 [104,] 217 16.87598 7.102008e+02 966059.6 -1 [105,] 228 16.87632 6.256200e+02 965657.7 1 [106,] 229 16.87635 4.924866e+02 966370.2 -1 [107,] 230 16.87638 4.830959e+02 966027.7 1 [108,] 231 16.87642 6.006085e+02 966613.1 -1 [109,] 351 16.88034 4.044732e+02 969623.7 -1 [110,] 355 16.88047 5.572708e+02 969890.9 -1 [111,] 356 16.88050 1.004071e+03 969327.4 1 [112,] 357 16.88053 1.388772e+03 970689.0 -1 [113,] 423 16.88267 1.446303e+03 971756.4 -1 [114,] 424 16.88270 1.278573e+03 970349.9 1 [115,] 425 16.88273 8.532896e+02 971090.7 -1 [116,] 426 16.88276 2.251586e+02 970339.0 1 [117,] 427 16.88280 -2.866497e+02 970080.8 -1 [118,] 493 16.88493 -4.264822e+02 970828.3 -1 [119,] 494 16.88496 -1.627069e+02 971219.7 1 [120,] 495 16.88499 3.860744e+02 971723.6 -1 [121,] 496 16.88502 1.120511e+03 971224.7 1 [122,] 497 16.88506 1.728018e+03 972962.4 -1 [123,] 563 16.88727 1.819531e+03 973471.2 -1 [124,] 564 16.88730 1.539458e+03 971705.5 1 [125,] 565 16.88734 1.162247e+03 972817.8 -1 [126,] 566 16.88737 7.824598e+02 971711.9 1 [127,] 567 16.88741 5.410702e+02 972261.5 -1 [128,] 631 16.88955 4.603809e+02 972288.5 -1 [129,] 635 16.88969 2.490442e+02 972073.2 -1 [130,] 636 16.88972 -1.129300e+02 971866.7 1 [131,] 637 16.88975 -4.096778e+02 971467.0 -1 [132,] 703 16.89201 -3.975974e+02 971988.0 -1 [133,] 704 16.89204 1.657193e+02 972374.2 1 [134,] 705 16.89207 8.692259e+02 973326.4 -1 [135,] 707 16.89214 1.384903e+03 973785.7 -1 [136,] 2092 16.92956 4.757434e+02 980645.5 -1 [137,] 2096 16.92966 4.938340e+02 980618.2 -1 [138,] 2097 16.92969 8.194083e+02 980108.7 1 [139,] 2098 16.92971 1.177893e+03 981273.4 -1 [140,] 2166 16.93144 1.397862e+03 979937.3 -1 [141,] 2167 16.93147 7.845331e+02 978503.6 1 [142,] 2168 16.93149 1.165464e+02 978535.1 -1 [143,] 2170 16.93154 -3.678463e+02 978047.3 -1 [144,] 2199 16.93228 -4.666431e+02 977554.1 1 [145,] 2200 16.93231 -4.444110e+02 977063.4 -1 [146,] 2201 16.93238 -4.049897e+02 977342.4 1 [147,] 2236 16.93357 -1.598861e+02 975828.4 -1 [148,] 2237 16.93360 2.006440e+02 975888.8 1 [149,] 2238 16.93364 4.912654e+02 976372.7 -1 [150,] 3110 16.95727 4.848961e+02 983107.6 -1 [151,] 3114 16.95737 3.669993e+02 982984.0 -1 [152,] 3115 16.95740 -1.384317e+00 982625.8 1 [153,] 3116 16.95743 -3.710045e+02 982245.9 -1 [154,] 3184 16.95917 -2.424865e+02 982212.1 -1 [155,] 3185 16.95920 5.206523e+02 982394.3 1 [156,] 3186 16.95922 1.231181e+03 983644.1 -1 [157,] 3254 16.96096 1.137233e+03 982940.8 -1 [158,] 3255 16.96098 8.357664e+02 981814.8 1 [159,] 3256 16.96101 5.807390e+02 982381.4 -1 [160,] 4192 16.98495 4.657308e+02 993951.2 -1 [161,] 4196 16.98506 4.665949e+02 994047.7 -1 [162,] 4197 16.98508 7.881684e+02 993566.0 1 [163,] 4198 16.98511 1.151157e+03 994748.4 -1 [164,] 4200 16.98516 1.333916e+03 994953.2 -1 [165,] 4266 16.98685 1.448307e+03 995552.0 -1 [166,] 4267 16.98688 8.119438e+02 994081.4 1 [167,] 4268 16.98690 8.466280e+01 994120.4 -1 [168,] 4270 16.98695 -3.643844e+02 993751.0 -1 [169,] 4336 16.98863 -4.569540e+02 993686.1 -1 [170,] 4337 16.98866 1.915898e+02 994152.3 1 [171,] 4338 16.98868 1.018088e+03 995184.6 -1 [172,] 4339 16.98871 1.487161e+03 994065.7 1 [173,] 4340 16.98873 1.651165e+03 995727.1 -1 [174,] 4406 16.99042 1.747285e+03 995265.0 -1 [175,] 4407 16.99044 1.380480e+03 993495.2 1 [176,] 4408 16.99047 9.344170e+02 994395.3 -1 [177,] 5270 17.01266 4.671886e+02 1004683.9 -1 [178,] 5274 17.01276 3.813263e+02 1004635.8 -1 [179,] 5275 17.01278 -1.243595e+00 1004262.8 1 [180,] 5276 17.01281 -3.709082e+02 1003896.2 -1 [181,] 5344 17.01454 -5.455958e+01 1005209.0 -1 [182,] 5345 17.01457 6.354682e+02 1005200.7 1 [183,] 5346 17.01459 1.275697e+03 1006539.8 -1 [184,] 5414 17.01632 1.266237e+03 1007139.1 -1 [185,] 5415 17.01634 9.575417e+02 1005845.5 1 [186,] 5416 17.01637 6.409508e+02 1006486.9 -1 [187,] 7624 17.07393 4.677943e+02 1012834.1 -1 [188,] 7628 17.07403 4.670362e+02 1012768.6 -1 [189,] 7629 17.07406 7.842208e+02 1012244.7 1 [190,] 7630 17.07408 1.124560e+03 1013421.6 -1 [191,] 7698 17.07581 1.368759e+03 1013002.0 -1 [192,] 7699 17.07584 7.618378e+02 1011581.5 1 [193,] 7700 17.07587 8.507522e+01 1011598.3 -1 [194,] 7702 17.07591 -3.683960e+02 1011111.5 -1 [195,] 7768 17.07758 -4.971986e+02 1010374.3 -1 [196,] 7769 17.07761 -1.938099e+02 1010885.8 1 [197,] 7770 17.07763 1.900012e+02 1011078.4 -1 [198,] 8714 17.10161 4.776065e+02 1019878.7 -1 [199,] 8718 17.10171 4.707565e+02 1019842.6 -1 [200,] 8719 17.10174 1.842209e+02 1019328.6 1 [201,] 8720 17.10176 -1.370620e+02 1019130.8 -1 [202,] 8722 17.10181 -4.070949e+02 1018817.8 -1 [203,] 8788 17.10349 -4.628477e+02 1017601.2 -1 [204,] 8789 17.10352 2.793206e+02 1018060.8 1 [205,] 8790 17.10355 9.175998e+02 1019076.1 -1 [206,] 8792 17.10360 1.364021e+03 1019477.2 -1 [207,] 8858 17.10526 1.347401e+03 1017954.4 -1 [208,] 8859 17.10529 1.089928e+03 1016465.7 1 [209,] 8860 17.10532 7.691169e+02 1017170.3 -1 [210,] 9804 17.12930 4.931504e+02 1012034.1 -1 [211,] 9808 17.12940 4.510122e+02 1012106.7 -1 [212,] 9809 17.12942 7.408037e+02 1011631.3 1 [213,] 9810 17.12945 1.058777e+03 1012769.1 -1 [214,] 9812 17.12950 1.320176e+03 1012989.1 -1 [215,] 9878 17.13118 1.411815e+03 1013489.3 -1 [216,] 9879 17.13120 6.659737e+02 1012038.8 1 [217,] 9880 17.13123 -1.542319e+02 1011839.5 -1 [218,] 9882 17.13128 -4.346449e+02 1011588.9 -1 [219,] 9948 17.13296 -5.019987e+02 1011676.2 -1 [220,] 9949 17.13298 -1.082689e+02 1012183.5 1 [221,] 9950 17.13301 3.166747e+02 1012541.3 -1 [222,] 10018 17.13473 5.275650e+02 1012906.4 -1 [223,] 10019 17.13475 9.724428e+02 1012359.7 1 [224,] 10020 17.13478 1.466534e+03 1013885.4 -1 [225,] 10088 17.13650 1.716263e+03 1014470.3 -1 [226,] 10089 17.13652 1.292360e+03 1012727.7 1 [227,] 10090 17.13655 8.041320e+02 1013544.6 -1 [228,] 10453 17.14603 4.084899e+02 1012483.1 1 [229,] 10454 17.14606 4.798985e+02 1012847.2 -1 [230,] 10455 17.14608 5.707684e+02 1012248.9 1 [231,] 10867 17.15684 3.323895e+02 1010116.8 1 [232,] 10868 17.15686 2.734827e+02 1010567.3 -1 [233,] 10869 17.15689 3.783350e+02 1010739.2 1 [234,] 10870 17.15691 4.825066e+02 1011121.3 -1 [235,] 10931 17.15856 8.813722e+02 1010594.5 1 [236,] 10932 17.15859 2.376076e+03 1011012.8 -1 [237,] 10933 17.15862 -1.016645e+03 1010534.3 1 [238,] 10934 17.15865 -6.758505e+03 1011027.0 -1 [239,] 10935 17.15868 5.953462e+03 1010547.3 1 [240,] 10936 17.15871 2.824777e+04 1011064.8 -1 [241,] 10937 17.15874 -1.981213e+04 1010534.3 1 [242,] 10938 17.15877 -1.014677e+05 1011037.7 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 1569 16.91611 9.530970e+11 [2,] 5828 17.02683 9.555996e+07 [3,] 5882 17.02820 3.809980e+02 [4,] 10330 17.14265 9.505996e+07 [5,] 10758 17.15406 3.818040e+02 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) -166.839 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 108.039 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 106.881 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 37.53 PER MEG" [1] 324.3789 400.7020 405.4180 384.8695 NA [1] -177.0385 -682.8940 -409.2660 -795.2715 NA [1] "Nominal linear calibrations:" [1] "co2scl = 0.629 co2off = 146.64 o2scla = -0.051 o2offa = -46.6" [1] "(dV/V)/(dXO2/XO2) = -4.081" [1] "(dV/V)/d(O2/N2) = -3.227" [1] "Finding cal and sample periods" [1] "Median Cal: 2.53 minutes" [1] "Average Cal: 2.78 minutes" [1] "Shortest Cal: 2.51 minutes" [1] "Longest Cal: 3.37 minutes" [1] "Reading in aircraft data" [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.00495" [1] "HS CO2 vs. PACAB: m = -0.00396, r^2 = 0.57" [1] "LS CO2 vs. PACAB: m = -0.00595, r^2 = 0.47" [1] "HS+LS LIH2O vs. PACAB: m = -3.3e-05" [1] "HS LIH2O vs. PACAB: m = -3.72e-05, r^2 = 0.41" [1] "LS LIH2O vs. PACAB: m = -2.88e-05, r^2 = 0.14" [1] "HS+LS CO2 vs. LIH2O: m = 66.6" [1] "HS CO2 vs. LIH2O: m = 51, r^2 = 0.27" [1] "LS CO2 vs. LIH2O: m = 82.1, r^2 = 0.46" [1] "APCO2 vs. PACAB: m = -0.00811, r^2 = 0.01" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 0.0444" [1] "HS O2 vs. PACAB: m = 0.069, r^2 = 0.11" [1] "LS O2 vs. PACAB: m = 0.0199, r^2 = 0.02" [1] "HS+LS O2 vs. LIH2O: m = -1120" [1] "HS O2 vs. LIH2O: m = -1980, r^2 = 0.29" [1] "LS O2 vs. LIH2O: m = -255, r^2 = 0.02" [1] "HS+LS O2 vs. PAO2: m = -25.2" [1] "HS O2 vs. PAO2: m = -28, r^2 = 0.75" [1] "LS O2 vs. PAO2: m = -22.5, r^2 = 0.35" [1] "HS+LS O2 vs. TPBOX: m = 4.29" [1] "HS O2 vs. TPBOX: m = 7.14, r^2 = 0.51" [1] "LS O2 vs. TPBOX: m = 1.44, r^2 = 0.04" [1] "APO vs. PACAB: m = 0.0865, r^2 = 0.01" [1] "APO vs. PAO2: m = -7.05, r^2 = 0.01" [1] "APO vs. TPBOX: m = 5.38, r^2 = 0.02" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = -3.97, r^2 = 0.13" [1] "LS CO2 vs. LiCor Cell P: m = -11.1, r^2 = 0.4" [1] "HS CO2 vs. CO2 Vol P: m = 1.31, r^2 = 0.48" [1] "LS CO2 vs. CO2 Vol P: m = 2.01, r^2 = 0.3" [1] "HS CO2 vs. SLOPE: m = 0.0747, r^2 = 0.01" [1] "LS CO2 vs. SLOPE: m = -1.73, r^2 = 0.42" [1] "HS O2 vs. O2 Vol P: m = -36.3, r^2 = 0.57" [1] "LS O2 vs. O2 Vol P: m = -18.6, r^2 = 0.26" [1] "HS O2 vs. O2 Cell T: m = 8.58, r^2 = 0.1" [1] "LS O2 vs. O2 Cell T: m = 11.3, r^2 = 0.36" [1] "HS O2 vs. CO2 Vol P: m = -48.6, r^2 = 0.36" [1] "LS O2 vs. CO2 Vol P: m = -32.1, r^2 = 0.31" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = 15.6, r^2 = 0.19" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = 2.35, r^2 = 0.02" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -48.6, r^2 = 0.36" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -32.1, r^2 = 0.31" [1] "HS O2 vs. LIH2O: m = -95.9, r^2 = 0" [1] "LS O2 vs. LIH2O: m = -563, r^2 = 0.06" [1] "HS O2 vs. SLOPE: m = -0.328, r^2 = 0.09" [1] "LS O2 vs. SLOPE: m = 0.525, r^2 = 0.5" [1] "HS CO2 vs. Time: m = 3.06, r^2 = 0.27" [1] "LS CO2 vs. Time: m = 2.044, r^2 = 0.11" [1] "HS CO2 vs. Cylinder T: m = -0.899, r^2 = 0.48" [1] "LS CO2 vs. Cylinder T: m = -1.735, r^2 = 0.397" [1] "HS CO2 vs. Regulator T: m = -0.541, r^2 = 0.49" [1] "LS CO2 vs. Regulator T: m = -0.697, r^2 = 0.325" [1] "HS CO2 vs. Ref. Volumes T: m = -0.847, r^2 = 0.38" [1] "LS CO2 vs. Ref. Volumes T: m = -1.892, r^2 = 0.641" [1] "HS CO2 vs. Manifold T: m = -0.443, r^2 = 0.62" [1] "LS CO2 vs. Manifold T: m = -0.951, r^2 = 0.6" [1] "HS CO2 vs. Pump Box T: m = -0.157, r^2 = 0.49" [1] "LS CO2 vs. Pump Box T: m = -0.149, r^2 = 0.071" [1] "HS O2 vs. Cylinder T: m = 40.414, r^2 = 0.53" [1] "LS O2 vs. Cylinder T: m = -1.52, r^2 = 0.001" [1] "HS O2 vs. Regulator T: m = 22.295, r^2 = 0.45" [1] "LS O2 vs. Regulator T: m = 2.095, r^2 = 0.012" [1] "HS O2 vs. Ref. Volumes T: m = 34.722, r^2 = 0.35" [1] "LS O2 vs. Ref. Volumes T: m = 9.137, r^2 = 0.059" [1] "HS O2 vs. Manifold T: m = 17.186, r^2 = 0.51" [1] "LS O2 vs. Manifold T: m = 12.589, r^2 = 0.415" [1] "HS O2 vs. Pump Box T: m = 7.831, r^2 = 0.66" [1] "LS O2 vs. Pump Box T: m = 0.783, r^2 = 0.008" [1] "HS CO2 vs. WT P: m = -0.004, r^2 = 0.39" [1] "LS CO2 vs. WT P: m = -0.007, r^2 = 0.488" [1] "HS CO2 vs. SP P: m = -0.00318, r^2 = 0.37" [1] "HS CO2 vs. PACAB comb with SP P: m = -0.148, r^2 = 0.52" [1] "HS CO2 vs. SP P comb with PACAB: m = 0.145, r^2 = 0.52" [1] "LS CO2 vs. SP P: m = -0.00726, r^2 = 0.52" [1] "LS CO2 vs. PACAB comb with SP P: m = -0.109, r^2 = 0.6" [1] "LS CO2 vs. SP P comb with PACAB: m = 0.101, r^2 = 0.6" [1] "HS CO2 vs. WT FL: m = -0.209, r^2 = 0.43" [1] "LS CO2 vs. WT FL: m = -0.416, r^2 = 0.758" [1] "HS CO2 vs. SP FL: m = 0.191, r^2 = 0.35" [1] "LS CO2 vs. SP FL: m = 0.207, r^2 = 0.182" [1] "HS O2 vs. SLPDIFF: m = -0.297, r^2 = 0.06" [1] "LS O2 vs. SLPDIFF: m = -0.562, r^2 = 0.208" [1] "HS O2 vs. WT P: m = 0.115, r^2 = 0.18" [1] "LS O2 vs. WT P: m = 0.007, r^2 = 0.002" [1] "HS O2 vs. SP P: m = 0.118, r^2 = 0.18" [1] "LS O2 vs. SP P: m = 0.008, r^2 = 0.002" [1] "HS O2 vs. WT FL: m = 7.255, r^2 = 0.28" [1] "LS O2 vs. WT FL: m = 0.983, r^2 = 0.017" [1] "HS O2 vs. SP FL: m = -4.4, r^2 = 0.1" [1] "LS O2 vs. SP FL: m = 0.276, r^2 = 0.001" [1] "Plotting calibration shapes" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.65" [1] "Median all HS CO2 SD = 0.59" [1] "Median all LS CO2 SD = 0.67" [1] "Median all LT CO2 SD = 0.66" [1] "Median all WT CO2 SD = 0.59" [1] "Median all HS or LS CO2 SD = 0.65" [1] "Median all cal O2 SD = 5.78" [1] "Median all HS O2 SD = 5.15" [1] "Median all LS O2 SD = 5.78" [1] "Median all LT O2 SD = 5.15" [1] "Median all WT O2 SD = 6.37" [1] "Median all HS or LS O2 SD = 5.75" [1] "Median all cal CO2 Slope = -0.03" [1] "Median all HS CO2 Slope = -0.1" [1] "Median all LS CO2 Slope = 0.03" [1] "Median all LT CO2 Slope = 0.12" [1] "Median all WT CO2 Slope = -0.1" [1] "Median all HS or LS CO2 Slope = -0.03" [1] "Median all cal O2 Slope = 0.02" [1] "Median all HS O2 Slope = 0.34" [1] "Median all LS O2 Slope = -0.09" [1] "Median all LT O2 Slope = -0.85" [1] "Median all WT O2 Slope = 1.11" [1] "Median all HS or LS O2 Slope = -0.08" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 7.85 per meg" [1] "Initial O2 Calibration Offset = -17.05 per meg" [1] "SD of O2 Calibration (post-takeoff) = 7.85 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = -17.05 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using HIPPO1-2 inlet volumes" [1] "before any lag: 75085.83 100117.99" [1] "Time lag adjustments = 0 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 39.9 at 104.4 sccm" [1] "Median O2 delay + tlagff = 40.8 at 104.4 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 38.3 at 104.4 sccm" [1] "Median O2 delay from 3-way + tlagff = 39.2 at 104.4 sccm" [1] "after calc and ff lag: 75043.02 100074.98" [1] "2025-05-13 11:10:44 MDT" [1] "Calculating 1-sec interpolated values" [1] "Screened 2 1-Hz values because of data gaps at:" [1] 16.92725 16.92726 [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Not reporting 23 O2 values from manual exclude period 16.927335 to 16.92803" [1] "Not reporting 23 APO values from manual exclude period 16.927335 to 16.92803" [1] "Not reporting 54 O2 values from manual exclude period 16.997536 to 16.998926" [1] "Not reporting 54 APO values from manual exclude period 16.997536 to 16.998926" [1] "Not reporting 55 O2 values from manual exclude period 17.155835 to 17.157225" [1] "Not reporting 55 APO values from manual exclude period 17.155835 to 17.157225" [1] "Not reporting 16 O2 values from manual exclude period 17.158094 to 17.158615" [1] "Not reporting 16 APO values from manual exclude period 17.158094 to 17.158615" [1] "Not reporting 16 CO2 values from manual exclude period 17.158094 to 17.158615" [1] "Not reporting 16 APO values from manual exclude period 17.158094 to 17.158615" [1] "Not reporting 62 smoothed O2 values from manual exclude period 16.926839937985 to 16.9275485921597" [1] "Not reporting 62 smoothed APO values from manual exclude period 16.926839937985 to 16.9275485921597" [1] "Not reporting 121 smoothed O2 values from manual exclude period 16.997074607859 to 16.9984750544893" [1] "Not reporting 121 smoothed APO values from manual exclude period 16.997074607859 to 16.9984750544893" [1] "Not reporting 121 smoothed O2 values from manual exclude period 17.1553318252878 to 17.1567261200763" [1] "Not reporting 121 smoothed APO values from manual exclude period 17.1553318252878 to 17.1567261200763" [1] "Not reporting 0 smoothed O2 values from manual exclude period 17.1575882940235 to 17.1581162550528" [1] "Not reporting 0 smoothed APO values from manual exclude period 17.1575882940235 to 17.1581162550528" [1] "Not reporting 0 smoothed CO2 values from manual exclude period 17.1575882940235 to 17.1581162550528" [1] "Not reporting 0 smoothed APO values from manual exclude period 17.1575882940235 to 17.1581162550528" [1] "Not reporting 62 smoothed O2 values from manual exclude period 16.926839937985 to 16.9275485921597" [1] "Not reporting 62 smoothed APO values from manual exclude period 16.926839937985 to 16.9275485921597" [1] "Not reporting 121 smoothed O2 values from manual exclude period 16.997074607859 to 16.9984750544893" [1] "Not reporting 121 smoothed APO values from manual exclude period 16.997074607859 to 16.9984750544893" [1] "Not reporting 121 smoothed O2 values from manual exclude period 17.1553318252878 to 17.1567261200763" [1] "Not reporting 121 smoothed APO values from manual exclude period 17.1553318252878 to 17.1567261200763" [1] "Not reporting 0 smoothed O2 values from manual exclude period 17.1575882940235 to 17.1581162550528" [1] "Not reporting 0 smoothed APO values from manual exclude period 17.1575882940235 to 17.1581162550528" [1] "Not reporting 0 smoothed CO2 values from manual exclude period 17.1575882940235 to 17.1581162550528" [1] "Not reporting 0 smoothed APO values from manual exclude period 17.1575882940235 to 17.1581162550528" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item Read 24601 records [1] 5 2457 24601 [1] "done reading AO2" [1] 2009 2009 2009 2009 2009 2009 [1] 9 9 9 9 9 9 [1] 73462 73470 73480 73490 73500 73510 [1] "2009-01-09 20:24:22 UTC" "2009-01-09 20:24:30 UTC" [3] "2009-01-09 20:24:40 UTC" "2009-01-09 20:24:50 UTC" [5] "2009-01-09 20:25:00 UTC" "2009-01-09 20:25:10 UTC" [1] -325.69 -324.18 -320.39 -293.97 -292.22 -283.00 [1] 21154 [1] "Average Date / Time for slice RF05 = 2009-01-17 00:35:18.923814535141" [1] "sum(lsel) = 1877" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -11.36273 838.39806 [1] -11.36273 838.39806 [1] 161.6019 1011.3627 [1] 0 999999 [1] "highestmid = 670.64386" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO1 RF05 APO_AO2 range = -228.99,-195.96" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 24601 records [1] 5 2457 24601 [1] "done reading AO2" [1] 2009 2009 2009 2009 2009 2009 [1] 9 9 9 9 9 9 [1] 73462 73470 73480 73490 73500 73510 [1] "2009-01-09 20:24:22 UTC" "2009-01-09 20:24:30 UTC" [3] "2009-01-09 20:24:40 UTC" "2009-01-09 20:24:50 UTC" [5] "2009-01-09 20:25:00 UTC" "2009-01-09 20:25:10 UTC" [1] -609.44 -603.36 -588.97 -534.79 -510.39 -496.66 [1] 21162 [1] "Average Date / Time for slice RF05 = 2009-01-17 00:35:24.339723110199" [1] "sum(lsel) = 1878" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -11.36273 838.39806 [1] -11.36273 838.39806 [1] 161.6019 1011.3627 [1] 0 999999 [1] "highestmid = 670.64386" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO1 RF05 O2_AO2 range = -422.32,-388.87" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 24601 records [1] 5 2457 24601 [1] "done reading AO2" [1] 2009 2009 2009 2009 2009 2009 [1] 9 9 9 9 9 9 [1] 73462 73470 73480 73490 73500 73510 [1] "2009-01-09 20:24:22 UTC" "2009-01-09 20:24:30 UTC" [3] "2009-01-09 20:24:40 UTC" "2009-01-09 20:24:50 UTC" [5] "2009-01-09 20:25:00 UTC" "2009-01-09 20:25:10 UTC" [1] 403.897 403.019 401.176 396.714 391.797 390.968 [1] 21196 [1] "Average Date / Time for slice RF05 = 2009-01-17 00:36:07.22803354263306" [1] "sum(lsel) = 1912" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -11.36273 838.39806 [1] -11.36273 838.39806 [1] 161.6019 1011.3627 [1] 0 999999 [1] "highestmid = 671.040344" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO1 RF05 CO2_AO2 range = 385.19,387.97" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 67 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 67 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 67 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 67 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 67 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 67 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 67 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 67 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 67 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 67 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 67 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 67 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 67 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 67 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 67 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 67 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 67 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"