[1] "2025-05-13 11:02:57 MDT" options [1,] "file" "090112a" [2,] "flight" "RF03" [3,] "project" "HIPPO1" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "0" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "TRUE" [26,] "vxavail" "TRUE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "posttoonly" [48,] "o2caltype" "posttoonly" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "FALSE" [64,] "icartt" "0" [65,] "icarttrev" "0" [66,] "mmsrev" "TRUE" [67,] "usespline" "adjacent" [68,] "updncorr" "4pt" [69,] "updnave" "090112a" [1] "Reading in flight and plotting intervals" Read 7 records [1] "Reading in /scr/raf/stephens/AO2DAT/090112a.mr" Read 11629 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.16 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.21 seconds" [1] "New JOGEST = 2.21 seconds" [1] "New VALVE SKIP = 27 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/090112a.hr" Read 46520 records [1] "HR FILE LENGTH NOT NSWITCH * MRDATA FILE LENGTH" [1] 11629 46520 [1] "Converting hrdata statout" [1] "Tue May 13 11:02:57 AM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30055 description: HS CO2 = 324.38 O2 = -175.1" [1] "position 2 cylinder OK30057 description: LS CO2 = 400.7 O2 = -682" [1] "position 3 cylinder OK30053 description: LT CO2 = 405.42 O2 = -408.1" [1] "position 4 cylinder OK170199 description: WT CO2 = 384.87 O2 = -794.5" [1] 324.3811 400.6995 405.4170 384.8659 NA [1] -175.0682 -681.9930 -408.1270 -794.4551 NA [1] "Nominal linear calibrations:" [1] "co2scl = 1.22 co2off = 126.8 o2scla = -0.05 o2offa = -39.7" [1] "(dV/V)/(dXO2/XO2) = -4.164" [1] "(dV/V)/d(O2/N2) = -3.292" [1] "Reading in very high resolution timeseries" Read 232580 records [1] 232580 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 11:02:57 AM MDT 2025 done approxing mr variables" [1] "Tue May 13 11:02:59 AM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.292" [1] "o2scaleavenew_drelVdrelP = -4.164" [1] "median(o2scalenew) = -3.285" [1] "Empirical dV/V vs dP/P relationship =-3.473, r^2 =0.004, damping =0.834" [1] "Tue May 13 11:03:00 AM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "MASKING 20 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 11:03:31 AM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 561377.71008 SECONDS" [1] "Tue May 13 11:03:31 AM MDT 2025 done recreating mr o2diffs" [1] "Removed 124 medium-rate record(s) with accumulation errors" [1] "Removed 22 medium-rate record(s) > eco or < ico" [1] "from: 11484" [1] "to: 11505" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 2879 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) -36173.861 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) -36185.89 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) -36188.796 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -35.336 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 27 [1] 149 [1] 175 [1] 175 [1] 183 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 75 12.76496 1.839428e+03 949046.2 -1 [2,] 76 12.76498 9.631109e+02 947297.5 1 [3,] 77 12.76502 -1.878239e+02 947119.4 -1 [4,] 145 12.76703 -2.782902e+02 946783.7 -1 [5,] 146 12.76706 5.459011e+02 947025.0 1 [6,] 147 12.76709 1.368160e+03 948341.1 -1 [7,] 213 12.76924 1.553993e+03 948187.2 -1 [8,] 214 12.76927 1.208774e+03 946714.4 1 [9,] 215 12.76930 8.574755e+02 947519.6 -1 [10,] 283 12.77145 7.005585e+02 947263.7 -1 [11,] 284 12.77148 8.265713e+02 946599.9 1 [12,] 285 12.77151 1.165120e+03 947782.1 -1 [13,] 286 12.77154 1.777267e+03 946618.1 1 [14,] 287 12.77157 2.298482e+03 948828.3 -1 [15,] 453 12.77689 2.439034e+03 951334.6 -1 [16,] 454 12.77693 3.053455e+03 948990.0 1 [17,] 455 12.77696 3.423979e+03 952229.6 -1 [18,] 456 12.77701 3.090489e+03 948930.3 1 [19,] 457 12.77704 2.582134e+03 951459.1 -1 [20,] 594 12.78093 1.796015e+03 951475.5 1 [21,] 595 12.78096 1.765264e+03 953304.6 -1 [22,] 596 12.78099 1.772762e+03 951709.9 1 [23,] 907 12.79091 6.109821e+02 949767.6 -1 [24,] 911 12.79102 7.967854e+02 949963.3 -1 [25,] 912 12.79104 1.133688e+03 949158.2 1 [26,] 913 12.79107 1.450004e+03 950545.5 -1 [27,] 979 12.79275 1.537546e+03 950224.0 -1 [28,] 980 12.79278 1.425484e+03 948742.8 1 [29,] 981 12.79280 1.071771e+03 949715.2 -1 [30,] 982 12.79283 2.786764e+02 948751.4 1 [31,] 983 12.79286 -2.522369e+02 948504.5 -1 [32,] 1051 12.79459 -1.820583e+01 948974.1 -1 [33,] 1052 12.79461 2.898897e+02 948969.7 1 [34,] 1053 12.79464 5.392203e+02 949510.7 -1 [35,] 1732 12.81204 8.501285e+02 959187.7 1 [36,] 1733 12.81207 8.470233e+02 959829.4 -1 [37,] 1734 12.81209 8.475865e+02 958855.7 1 [38,] 1735 12.81212 7.697527e+02 959687.7 -1 [39,] 1736 12.81214 7.638436e+02 959081.5 1 [40,] 1989 12.81861 7.012463e+02 957114.4 -1 [41,] 1993 12.81872 3.816269e+02 956720.0 -1 [42,] 1994 12.81874 -5.796193e+00 956388.5 1 [43,] 1995 12.81877 -3.217719e+02 956070.8 -1 [44,] 2063 12.82051 2.086693e+01 956263.3 -1 [45,] 2064 12.82053 7.237615e+02 956204.0 1 [46,] 2065 12.82056 1.371192e+03 957547.6 -1 [47,] 3067 12.84628 7.795164e+02 969386.6 -1 [48,] 3071 12.84638 7.365341e+02 969514.2 -1 [49,] 3072 12.84641 1.075116e+03 968749.3 1 [50,] 3073 12.84644 1.425520e+03 970205.0 -1 [51,] 3075 12.84649 1.549015e+03 970442.8 -1 [52,] 3141 12.84817 1.503093e+03 972096.6 -1 [53,] 3142 12.84820 8.342566e+02 970591.8 1 [54,] 3143 12.84823 1.726774e+02 970726.4 -1 [55,] 3145 12.84828 -2.778773e+02 970322.1 -1 [56,] 3163 12.84874 -2.823932e+02 970791.5 -1 [57,] 3201 12.84971 -2.372319e+02 971459.5 -1 [58,] 3205 12.84981 -2.365737e+02 971587.4 -1 [59,] 3211 12.84997 -2.426873e+02 971583.2 -1 [60,] 3212 12.84999 2.041670e+02 971769.8 1 [61,] 3213 12.85002 5.845511e+02 972438.5 -1 [62,] 3219 12.85017 5.857787e+02 972765.5 -1 [63,] 3223 12.85027 6.611118e+02 972646.7 -1 [64,] 3240 12.85071 6.270885e+02 972353.3 1 [65,] 3241 12.85073 7.183898e+02 972964.2 -1 [66,] 3242 12.85076 7.395953e+02 972145.3 1 [67,] 3243 12.85078 5.343203e+02 972931.3 -1 [68,] 3244 12.85081 3.361090e+02 972520.4 1 [69,] 4149 12.87398 7.938717e+02 987838.2 -1 [70,] 4153 12.87408 7.691760e+02 987988.9 -1 [71,] 4154 12.87411 3.529558e+02 987272.7 1 [72,] 4155 12.87413 -1.114756e+02 987187.8 -1 [73,] 4223 12.87589 -3.398101e+02 990554.7 -1 [74,] 4224 12.87591 3.851086e+02 990981.2 1 [75,] 4225 12.87594 1.175358e+03 992280.2 -1 [76,] 4227 12.87599 1.500752e+03 992576.2 -1 [77,] 4295 12.87773 1.870273e+03 996056.8 -1 [78,] 4363 12.87946 1.896947e+03 998651.1 -1 [79,] 4364 12.87948 1.522659e+03 996786.3 1 [80,] 4365 12.87951 1.100057e+03 997897.2 -1 [81,] 5233 12.90171 7.742657e+02 995742.3 -1 [82,] 5237 12.90181 9.256987e+02 996038.3 -1 [83,] 5238 12.90183 1.263733e+03 995087.1 1 [84,] 5239 12.90186 1.527253e+03 996679.6 -1 [85,] 5305 12.90355 1.600525e+03 998628.3 -1 [86,] 5306 12.90358 1.464415e+03 997028.1 1 [87,] 5307 12.90360 1.097684e+03 998073.8 -1 [88,] 5308 12.90363 4.141708e+02 997041.2 1 [89,] 5309 12.90365 -1.618475e+02 996889.0 -1 [90,] 5375 12.90533 -3.412860e+02 998840.0 -1 [91,] 5376 12.90536 -1.926483e+02 999235.4 1 [92,] 5377 12.90538 3.279438e+01 999395.6 -1 [93,] 5378 12.90541 3.687267e+02 999404.7 1 [94,] 5379 12.90544 6.841776e+02 1000053.6 -1 [95,] 6317 12.92942 6.603446e+02 1000388.2 -1 [96,] 6321 12.92952 5.113528e+02 1000279.6 -1 [97,] 6322 12.92954 1.051522e+02 999819.6 1 [98,] 6323 12.92957 -2.469548e+02 999563.0 -1 [99,] 6389 12.93126 -3.275214e+02 1001003.3 -1 [100,] 6390 12.93128 -6.598143e+01 1001382.0 1 [101,] 6391 12.93131 4.347854e+02 1001932.6 -1 [102,] 6392 12.93134 1.024559e+03 1001432.4 1 [103,] 6393 12.93136 1.465350e+03 1002933.0 -1 [104,] 6461 12.93310 1.342859e+03 1004492.8 -1 [105,] 6463 12.93315 7.760578e+02 1004000.1 -1 [106,] 7401 12.95712 5.958661e+02 1000554.6 -1 [107,] 7405 12.95722 7.701029e+02 1000726.1 -1 [108,] 7406 12.95725 1.141533e+03 999882.3 1 [109,] 7407 12.95727 1.486447e+03 1001373.4 -1 [110,] 7473 12.95896 1.586750e+03 1001178.4 -1 [111,] 7474 12.95899 1.438227e+03 999553.3 1 [112,] 7475 12.95901 1.039175e+03 1000498.9 -1 [113,] 7476 12.95904 3.770906e+02 999522.5 1 [114,] 7477 12.95906 -2.018355e+02 999304.3 -1 [115,] 7545 12.96080 -2.165006e+01 999568.2 -1 [116,] 7546 12.96082 2.855508e+02 999572.6 1 [117,] 7547 12.96085 5.418210e+02 1000147.7 -1 [118,] 8485 12.98483 7.658692e+02 1008156.2 -1 [119,] 8489 12.98493 5.566367e+02 1007896.0 -1 [120,] 8490 12.98496 1.234161e+02 1007331.7 1 [121,] 8491 12.98498 -2.554499e+02 1007024.0 -1 [122,] 8541 12.98639 -3.254413e+02 1006760.9 -1 [123,] 8542 12.98643 1.820899e+02 1007070.7 1 [124,] 8543 12.98645 6.976461e+02 1007785.1 -1 [125,] 8588 12.98785 6.579648e+02 1006615.6 1 [126,] 8589 12.98788 6.640577e+02 1007208.5 -1 [127,] 8590 12.98791 6.664743e+02 1006405.2 1 [128,] 8882 12.99692 6.234756e+02 1006988.8 -1 [129,] 8886 12.99703 5.716648e+02 1007001.5 -1 [130,] 8887 12.99706 1.674930e+02 1006433.3 1 [131,] 8888 12.99709 -2.189911e+02 1006202.5 -1 [132,] 8956 12.99908 -1.422191e+02 1007081.3 -1 [133,] 8957 12.99911 6.865729e+02 1007191.1 1 [134,] 8958 12.99914 1.483215e+03 1008719.4 -1 [135,] 9028 13.00117 1.903989e+03 1009854.6 -1 [136,] 9096 13.00315 1.696723e+03 1010240.4 -1 [137,] 9097 13.00318 1.206576e+03 1008557.6 1 [138,] 9098 13.00321 7.438984e+02 1009345.2 -1 [139,] 9904 13.02460 6.075232e+02 1011229.3 -1 [140,] 9908 13.02470 6.221729e+02 1011195.4 -1 [141,] 9909 13.02472 9.580496e+02 1010546.5 1 [142,] 9910 13.02475 1.328015e+03 1011924.3 -1 [143,] 9912 13.02480 1.573991e+03 1012145.8 -1 [144,] 9978 13.02647 1.591093e+03 1011544.1 -1 [145,] 9979 13.02650 8.244387e+02 1009917.8 1 [146,] 9980 13.02653 -1.097229e+02 1009763.0 -1 [147,] 10048 13.02825 -3.366073e+02 1008863.5 -1 [148,] 10049 13.02828 1.017041e+02 1009211.3 1 [149,] 10050 13.02830 5.373503e+02 1009781.3 -1 [150,] 10896 13.05228 6.807011e+02 1009879.3 -1 [151,] 10900 13.05238 6.811099e+02 1009825.1 -1 [152,] 10901 13.05241 3.437859e+02 1009088.0 1 [153,] 10902 13.05243 -5.394001e+01 1008983.2 -1 [154,] 10904 13.05248 -2.675397e+02 1008758.8 -1 [155,] 10970 13.05416 -3.687325e+02 1007265.4 -1 [156,] 10971 13.05419 3.127127e+02 1007606.2 1 [157,] 10972 13.05421 1.076591e+03 1008760.0 -1 [158,] 10974 13.05426 1.449685e+03 1009105.8 -1 [159,] 11040 13.05594 1.573799e+03 1007809.7 -1 [160,] 11041 13.05597 1.273865e+03 1006225.3 1 [161,] 11042 13.05599 9.551396e+02 1007178.9 -1 [162,] 11381 13.06462 8.150882e+02 1005479.5 1 [163,] 11382 13.06465 7.086200e+02 1006386.4 -1 [164,] 11383 13.06467 7.214365e+02 1005811.8 1 [165,] 11384 13.06470 8.967682e+02 1006673.2 -1 [166,] 11385 13.06472 9.886627e+02 1005608.4 1 [167,] 11393 13.06493 7.937645e+02 1005761.0 1 [168,] 11394 13.06496 8.160931e+02 1006700.9 -1 [169,] 11395 13.06498 8.302685e+02 1005961.3 1 [170,] 11458 13.06658 1.125836e+03 1008417.5 -1 [171,] 11459 13.06661 1.441656e+03 1007331.0 1 [172,] 11460 13.06663 1.647003e+03 1009076.5 -1 [173,] 11463 13.06671 1.713780e+03 1007276.8 1 [174,] 11464 13.06673 1.774460e+03 1009278.3 -1 [175,] 11465 13.06676 1.887808e+03 1007509.7 1 [176,] 11476 13.06704 4.071517e+03 1010404.9 -1 [177,] 11477 13.06707 5.013502e+03 1007647.7 1 [178,] 11478 13.06709 -1.691016e+03 1010574.3 -1 [179,] 11479 13.06712 -5.513710e+03 1007643.1 1 [180,] 11480 13.06715 1.973213e+04 1010688.1 -1 [181,] 11481 13.06717 3.345622e+04 1007666.1 1 [182,] 11482 13.06719 -7.969329e+04 1010817.0 -1 [183,] 11483 13.06727 -6.446987e+05 1007618.5 1 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 188.917 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) -94.43 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 78.823 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 20.748 PER MEG" [1] 324.3811 400.6995 405.4170 384.8659 NA [1] -175.0682 -681.9930 -408.1270 -794.4551 NA [1] "Nominal linear calibrations:" [1] "co2scl = 1.217 co2off = 127.27 o2scla = -0.05 o2offa = -39.8" [1] "(dV/V)/(dXO2/XO2) = -4.147" [1] "(dV/V)/d(O2/N2) = -3.279" [1] "Finding cal and sample periods" [1] "Median Cal: 2.54 minutes" [1] "Average Cal: 2.63 minutes" [1] "Shortest Cal: 2.1 minutes" [1] "Longest Cal: 3.17 minutes" [1] "Reading in aircraft data" [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.000645" [1] "HS CO2 vs. PACAB: m = -0.000571, r^2 = 0.04" [1] "LS CO2 vs. PACAB: m = -0.000719, r^2 = 0.05" [1] "HS+LS LIH2O vs. PACAB: m = 4.28e-05" [1] "HS LIH2O vs. PACAB: m = 2.84e-05, r^2 = 0.37" [1] "LS LIH2O vs. PACAB: m = 5.73e-05, r^2 = 0.55" [1] "HS+LS CO2 vs. LIH2O: m = -17.8" [1] "HS CO2 vs. LIH2O: m = -27.8, r^2 = 0.18" [1] "LS CO2 vs. LIH2O: m = -7.73, r^2 = 0.03" [1] "APCO2 vs. PACAB: m = -0.0377, r^2 = 0.07" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = -0.0378" [1] "HS O2 vs. PACAB: m = 0.0431, r^2 = 0.04" [1] "LS O2 vs. PACAB: m = -0.119, r^2 = 0.14" [1] "HS+LS O2 vs. LIH2O: m = -400" [1] "HS O2 vs. LIH2O: m = -27.8, r^2 = 0" [1] "LS O2 vs. LIH2O: m = -773, r^2 = 0.03" [1] "HS+LS O2 vs. PAO2: m = -44.8" [1] "HS O2 vs. PAO2: m = -37.1, r^2 = 0.49" [1] "LS O2 vs. PAO2: m = -52.5, r^2 = 0.85" [1] "HS+LS O2 vs. TPBOX: m = 6.7" [1] "HS O2 vs. TPBOX: m = 4.38, r^2 = 0.25" [1] "LS O2 vs. TPBOX: m = 9.02, r^2 = 0.52" [1] "APO vs. PACAB: m = 0.791, r^2 = 0.07" [1] "APO vs. PAO2: m = -10.2, r^2 = 0" [1] "APO vs. TPBOX: m = 2.39, r^2 = 0" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = -0.649, r^2 = 0.02" [1] "LS CO2 vs. LiCor Cell P: m = -1.1, r^2 = 0.03" [1] "HS CO2 vs. CO2 Vol P: m = 0.275, r^2 = 0.08" [1] "LS CO2 vs. CO2 Vol P: m = 0.496, r^2 = 0.24" [1] "HS CO2 vs. SLOPE: m = -0.0542, r^2 = 0" [1] "LS CO2 vs. SLOPE: m = -0.542, r^2 = 0.17" [1] "HS O2 vs. O2 Vol P: m = -29.8, r^2 = 0.6" [1] "LS O2 vs. O2 Vol P: m = -47.1, r^2 = 0.89" [1] "HS O2 vs. O2 Cell T: m = 12.5, r^2 = 0.41" [1] "LS O2 vs. O2 Cell T: m = 22.8, r^2 = 0.87" [1] "HS O2 vs. CO2 Vol P: m = -29.6, r^2 = 0.24" [1] "LS O2 vs. CO2 Vol P: m = -53.6, r^2 = 0.51" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = 0.623, r^2 = 0.04" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = 4.05, r^2 = 0.02" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -29.6, r^2 = 0.24" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -53.6, r^2 = 0.51" [1] "HS O2 vs. LIH2O: m = -980, r^2 = 0.09" [1] "LS O2 vs. LIH2O: m = -1820, r^2 = 0.22" [1] "HS O2 vs. SLOPE: m = -0.429, r^2 = 0.23" [1] "LS O2 vs. SLOPE: m = 0.0923, r^2 = 0" [1] "HS CO2 vs. Time: m = 8.027, r^2 = 0.88" [1] "LS CO2 vs. Time: m = 7.893, r^2 = 0.83" [1] "HS CO2 vs. Cylinder T: m = -0.145, r^2 = 0.08" [1] "LS CO2 vs. Cylinder T: m = -0.413, r^2 = 0.314" [1] "HS CO2 vs. Regulator T: m = -0.101, r^2 = 0.13" [1] "LS CO2 vs. Regulator T: m = -0.194, r^2 = 0.318" [1] "HS CO2 vs. Ref. Volumes T: m = -0.068, r^2 = 0.02" [1] "LS CO2 vs. Ref. Volumes T: m = -0.361, r^2 = 0.229" [1] "HS CO2 vs. Manifold T: m = -0.091, r^2 = 0.13" [1] "LS CO2 vs. Manifold T: m = -0.186, r^2 = 0.474" [1] "HS CO2 vs. Pump Box T: m = 0.014, r^2 = 0.01" [1] "LS CO2 vs. Pump Box T: m = -0.11, r^2 = 0.382" [1] "HS O2 vs. Cylinder T: m = 13.409, r^2 = 0.18" [1] "LS O2 vs. Cylinder T: m = 28.719, r^2 = 0.278" [1] "HS O2 vs. Regulator T: m = 10.641, r^2 = 0.35" [1] "LS O2 vs. Regulator T: m = 20.159, r^2 = 0.634" [1] "HS O2 vs. Ref. Volumes T: m = 14.759, r^2 = 0.19" [1] "LS O2 vs. Ref. Volumes T: m = 32.448, r^2 = 0.34" [1] "HS O2 vs. Manifold T: m = 11.697, r^2 = 0.54" [1] "LS O2 vs. Manifold T: m = 19.219, r^2 = 0.932" [1] "HS O2 vs. Pump Box T: m = 2.266, r^2 = 0.07" [1] "LS O2 vs. Pump Box T: m = 10.536, r^2 = 0.638" [1] "HS CO2 vs. WT P: m = -0.001, r^2 = 0.16" [1] "LS CO2 vs. WT P: m = -0.001, r^2 = 0.086" [1] "HS CO2 vs. SP P: m = -0.00132, r^2 = 0.23" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.049, r^2 = 0.45" [1] "HS CO2 vs. SP P comb with PACAB: m = -0.049, r^2 = 0.45" [1] "LS CO2 vs. SP P: m = -9e-04, r^2 = 0.06" [1] "LS CO2 vs. PACAB comb with SP P: m = -0.054, r^2 = 0.25" [1] "LS CO2 vs. SP P comb with PACAB: m = 0.053, r^2 = 0.25" [1] "HS CO2 vs. WT FL: m = -0.041, r^2 = 0.04" [1] "LS CO2 vs. WT FL: m = -0.188, r^2 = 0.277" [1] "HS CO2 vs. SP FL: m = 0.037, r^2 = 0.15" [1] "LS CO2 vs. SP FL: m = 0.022, r^2 = 0.03" [1] "HS O2 vs. SLPDIFF: m = 0.076, r^2 = 0.02" [1] "LS O2 vs. SLPDIFF: m = -0.391, r^2 = 0.108" [1] "HS O2 vs. WT P: m = 0.04, r^2 = 0.04" [1] "LS O2 vs. WT P: m = -0.106, r^2 = 0.104" [1] "HS O2 vs. SP P: m = 0.041, r^2 = 0.04" [1] "LS O2 vs. SP P: m = -0.105, r^2 = 0.095" [1] "HS O2 vs. WT FL: m = 6.945, r^2 = 0.27" [1] "LS O2 vs. WT FL: m = 13.504, r^2 = 0.262" [1] "HS O2 vs. SP FL: m = -0.305, r^2 = 0" [1] "LS O2 vs. SP FL: m = 4.13, r^2 = 0.196" [1] "Plotting calibration shapes" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.65" [1] "Median all HS CO2 SD = 0.6" [1] "Median all LS CO2 SD = 0.66" [1] "Median all LT CO2 SD = 0.66" [1] "Median all WT CO2 SD = 0.65" [1] "Median all HS or LS CO2 SD = 0.65" [1] "Median all cal O2 SD = 5.07" [1] "Median all HS O2 SD = 4.72" [1] "Median all LS O2 SD = 5.47" [1] "Median all LT O2 SD = 6.8" [1] "Median all WT O2 SD = 3.92" [1] "Median all HS or LS O2 SD = 5.31" [1] "Median all cal CO2 Slope = -0.03" [1] "Median all HS CO2 Slope = -0.03" [1] "Median all LS CO2 Slope = 0" [1] "Median all LT CO2 Slope = -0.04" [1] "Median all WT CO2 Slope = -0.04" [1] "Median all HS or LS CO2 Slope = 0" [1] "Median all cal O2 Slope = 0.52" [1] "Median all HS O2 Slope = 0.19" [1] "Median all LS O2 Slope = 0.54" [1] "Median all LT O2 Slope = -1.63" [1] "Median all WT O2 Slope = 1.05" [1] "Median all HS or LS O2 Slope = 0.54" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 6.35 per meg" [1] "Initial O2 Calibration Offset = 9.12 per meg" [1] "SD of O2 Calibration (post-takeoff) = 6.43 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = 9.36 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = 9.36 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using HIPPO1-2 inlet volumes" [1] "before any lag: 65901.25 92211.7" [1] "Time lag adjustments = 0 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 39.2 at 104.9 sccm" [1] "Median O2 delay + tlagff = 40.1 at 104.9 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 38.3 at 104.9 sccm" [1] "Median O2 delay from 3-way + tlagff = 39.2 at 104.9 sccm" [1] "after calc and ff lag: 65859.21 92169.56" [1] "2025-05-13 11:04:14 MDT" [1] "Calculating 1-sec interpolated values" [1] "Screened 35 1-Hz values because of data gaps at:" [1] 12.78664 12.78666 12.78667 12.78668 12.78669 12.78670 12.78671 12.78672 [9] 12.78674 12.78675 12.78676 12.78677 12.78678 12.78679 12.78681 12.78682 [17] 12.78824 12.78825 12.78826 13.06684 13.06685 13.06686 13.06687 13.06689 [25] 13.06690 13.06691 13.06692 13.06693 13.06694 13.06696 13.06697 13.06698 [33] 13.06699 13.06700 13.06701 [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Correcting for Up/Down APO Differences" [1] 19.05392927 18.07136507 34.29610366 45.89965834 -13.16036021 [6] 6.45718100 17.92136096 10.33543998 0.27654543 -11.10902219 [11] -13.37364588 -10.59941758 8.11943208 8.11943208 5.87951318 [16] 13.37321918 13.37321918 14.77795915 14.51501096 0.12614436 [21] -0.20732352 -0.20732352 9.03932074 14.45234590 14.45234590 [26] 14.27493613 9.67794430 5.63567050 5.63567050 5.63567050 [31] 2.48769866 7.05865039 2.18016912 -1.52989620 3.17369192 [36] -0.15476267 2.11416374 2.11416374 1.50902868 1.68520076 [41] 2.25011480 1.42025717 0.01218865 1.31540900 1.52766538 [46] 4.53392401 -0.50701878 -1.82405808 -2.13688472 -3.39467742 [51] -7.23692815 -12.34997721 -12.34997721 -10.18643628 -2.33890872 [56] 0.38138099 2.68373262 -1.07846705 -3.28275539 -7.28748024 [61] -8.08706717 -26.06981859 -23.45449204 -6.56812881 -6.37552706 [66] -14.25599452 -13.95271301 -11.36142730 -13.63065232 3.84647987 [71] 1.24717895 -6.95246851 -6.95246851 5.52396480 8.92833037 [76] 9.11725032 9.32871014 -42.48136119 -44.00475545 -18.00438095 [81] -18.00438095 -14.84700609 -7.67343607 -1.69785762 -0.97396185 [86] -10.98956991 -15.70105882 -15.70105882 -12.78228100 -14.70474243 [91] -14.70474243 -0.68982503 9.30995216 9.44058716 9.44058716 [96] 4.64266788 -6.70456239 -15.31242066 -15.76351741 10.22408419 [101] 25.76591029 25.76591029 25.76591029 14.16510786 9.13058829 [106] 8.95798469 8.95798469 8.52912876 20.29514526 20.29514526 [111] 20.29514526 12.94350797 6.91157037 -0.18066296 -0.18066296 [116] -18.79644770 -21.28453253 -21.28453253 -21.47769393 -19.52592112 [121] -17.14684471 -17.14684471 -8.35863491 -8.44599053 -8.46979191 [126] -3.07335189 4.91752323 6.72869973 6.72869973 -6.08081727 [131] -6.13707132 -6.13707132 5.74929565 7.68945782 7.68945782 [136] 8.31109542 8.24271479 7.92755969 7.92755969 -2.17953523 [141] -1.15661739 -1.15661739 -1.15661739 2.57540267 0.01828615 [146] -1.56414711 -1.56414711 12.79357030 25.92228468 25.92228468 [151] 21.80786008 6.54873536 3.88281890 3.88281890 3.88281890 [156] 14.93321535 12.88956955 12.88956955 12.88956955 2.07996316 [161] 5.67811210 5.67811210 5.67811210 3.59587788 -2.53822622 [166] -2.53822622 -2.53822622 0.42271102 0.63338279 0.63338279 [171] 0.63338279 3.16418246 12.27853388 13.17484956 13.17484956 [176] 12.96077603 9.45827709 7.15502554 7.15502554 7.15502554 [181] 7.21795163 6.59530314 6.53300805 6.53300805 5.72095798 [186] -16.99354834 -16.99354834 -0.09332407 -2.09793733 -2.09793733 [191] -6.57615024 -6.07211294 -6.07211294 -18.22818989 -17.76482064 [196] -17.76482064 -9.61635236 -5.69911957 -5.69911957 9.56729287 [201] 8.78600637 8.78600637 6.86871476 2.83233632 2.83233632 [206] 2.83233632 10.23882730 7.71736081 7.71736081 7.71736081 [211] -1.31395050 -0.72013111 -0.72013111 6.62884487 -2.86704595 [216] -6.73481635 -6.73481635 -19.58892722 -19.88149606 -19.88149606 [221] -15.10046870 -4.59945316 -15.65599578 1.90566514 1.90566514 [226] 2.16087698 4.04546737 0.53392406 0.53392406 -1.82415322 [231] -0.50522491 0.26665506 0.26665506 -0.10863027 1.22851882 [236] 1.56754100 1.56754100 -5.23407463 -6.81733335 -6.81733335 [241] -6.50958994 -11.61976742 -11.61976742 -12.85367969 -7.36116532 [246] -7.36116532 1.31197716 -13.23062628 -13.29849202 -28.77991042 [251] -28.53998861 -28.53388207 -14.24245956 -16.85928534 -19.78985137 [256] -19.78985137 -8.24465917 1.93274499 6.87054485 4.36995266 [1] 48.41456 51.95353 54.34820 57.23634 61.50743 65.01400 68.68041 [8] 71.97873 75.09974 77.90241 81.78420 84.30076 87.17463 90.30829 [15] 92.93805 95.50280 98.02751 101.68075 105.46600 109.01785 111.58521 [22] 112.89267 114.65186 116.56488 118.77239 120.24254 121.50876 122.55479 [29] 123.40045 125.08782 128.93736 132.38976 137.25123 140.88041 144.83040 [36] 148.34636 152.02170 156.16097 160.32016 165.07269 169.08764 173.86652 [43] 178.04283 182.07365 185.94333 190.16949 194.11833 197.97108 201.32939 [50] 204.78736 208.55578 212.43838 216.33338 220.96396 224.67897 227.99875 [57] 231.74733 235.18727 239.03322 242.25312 245.56018 249.12046 252.88419 [64] 256.89052 260.50397 263.92107 267.37672 270.31801 273.27542 276.56809 [71] 279.72278 283.05230 286.45450 289.58846 293.14814 296.52852 301.13537 [78] 304.60548 308.05961 311.28876 314.64343 318.45881 322.00760 325.55773 [85] 329.06301 332.00194 334.20312 336.60455 338.45399 341.00761 342.67353 [92] 344.20560 345.81908 347.11130 348.67827 350.30325 351.68712 353.18615 [99] 355.38446 357.27792 358.90222 360.41043 361.90362 363.76012 365.66675 [106] 367.18902 368.63249 370.13385 371.81013 373.41364 374.89511 376.18716 [113] 377.74125 379.24128 381.60410 383.38824 384.93956 387.25019 388.68545 [120] 390.17487 392.19191 394.15475 395.65620 397.06720 398.97172 400.92869 [127] 402.41118 404.70035 406.13901 408.80601 411.00368 412.52907 413.99777 [134] 415.50509 416.78419 418.81121 420.84951 422.84719 424.31487 425.78470 [141] 427.05662 428.27433 429.65518 431.15350 432.61832 434.60126 436.07039 [148] 437.41521 438.83364 439.94538 442.42443 443.78641 444.98809 446.42568 [155] 447.83266 449.09854 450.43184 451.75328 453.14565 454.56132 456.09655 [162] 457.50572 458.89673 460.10220 461.54474 462.81508 464.07518 465.75685 [169] 467.02708 468.17625 469.55323 470.76781 472.17401 473.43223 474.79340 [176] 476.07257 477.35223 478.59828 479.96534 481.21356 482.37351 483.75376 [183] 484.98672 486.17511 487.46047 501.45982 502.97121 504.03136 505.45157 [190] 507.31978 509.66150 511.31130 512.97195 515.31852 516.96109 518.49501 [197] 519.99739 521.61818 523.18034 524.61617 526.00797 527.44602 528.87709 [204] 530.43806 531.93457 533.16836 534.74318 536.07670 537.55427 538.82966 [211] 540.20958 541.41816 542.99052 544.36612 545.69384 547.00592 548.46541 [218] 549.73049 551.24850 552.87207 554.74311 557.87027 564.04241 565.32094 [225] 566.38295 567.93852 569.17520 570.39808 571.68629 572.97773 574.20839 [232] 575.44098 576.89506 578.10517 579.36458 580.49995 581.75093 583.03898 [239] 584.28847 585.36221 586.77003 589.24383 590.52391 592.17131 594.14254 [246] 595.21487 596.64098 597.71501 599.01547 600.67758 602.24878 603.53386 [253] 604.73972 605.96312 607.30789 608.29399 609.58559 610.69859 611.81876 [260] 613.18107 [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Calling hippo_xsect.r to make cross-section plots" [1] "reading in merge file" Read 1 item Read 24751 records [1] 3 2473 24751 [1] "done reading AO2" [1] 2009 2009 2009 2009 2009 2009 [1] 9 9 9 9 9 9 [1] 73462 73470 73480 73490 73500 73510 [1] "2009-01-09 20:24:22 UTC" "2009-01-09 20:24:30 UTC" [3] "2009-01-09 20:24:40 UTC" "2009-01-09 20:24:50 UTC" [5] "2009-01-09 20:25:00 UTC" "2009-01-09 20:25:10 UTC" [1] -325.69 -324.18 -320.39 -293.97 -292.22 -283.00 [1] 21174 [1] "Average Date / Time for slice RF03 = 2009-01-12 22:08:33.6502287387848" [1] "sum(lsel) = 1967" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -4.7323 838.6062 [1] -4.7323 838.6062 [1] 161.3938 1004.7323 [1] 6.853714e-03 9.999990e+05 [1] "highestmid = 712.445526" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO1 RF03 APO_AO2 range = -257.08,-211.15" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 24751 records [1] 3 2473 24751 [1] "done reading AO2" [1] 2009 2009 2009 2009 2009 2009 [1] 9 9 9 9 9 9 [1] 73462 73470 73480 73490 73500 73510 [1] "2009-01-09 20:24:22 UTC" "2009-01-09 20:24:30 UTC" [3] "2009-01-09 20:24:40 UTC" "2009-01-09 20:24:50 UTC" [5] "2009-01-09 20:25:00 UTC" "2009-01-09 20:25:10 UTC" [1] -609.44 -603.36 -588.97 -534.79 -510.39 -496.66 [1] 21186 [1] "Average Date / Time for slice RF03 = 2009-01-12 22:08:27.7540650367737" [1] "sum(lsel) = 1968" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -4.7323 838.6062 [1] -4.7323 838.6062 [1] 161.3938 1004.7323 [1] 6.853714e-03 9.999990e+05 [1] "highestmid = 712.445526" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO1 RF03 O2_AO2 range = -492.43,-399.87" [1] "done outputting" [1] "done plotting" [1] "reading in merge file" Read 1 item Read 24751 records [1] 3 2473 24751 [1] "done reading AO2" [1] 2009 2009 2009 2009 2009 2009 [1] 9 9 9 9 9 9 [1] 73462 73470 73480 73490 73500 73510 [1] "2009-01-09 20:24:22 UTC" "2009-01-09 20:24:30 UTC" [3] "2009-01-09 20:24:40 UTC" "2009-01-09 20:24:50 UTC" [5] "2009-01-09 20:25:00 UTC" "2009-01-09 20:25:10 UTC" [1] 403.897 403.019 401.176 396.714 391.797 390.968 [1] 21195 [1] "Average Date / Time for slice RF03 = 2009-01-12 22:08:51.4329113960266" [1] "sum(lsel) = 1975" [1] "ready to extrapolate/interpolate" [1] "PSXC" [1] -4.7323 838.6062 [1] -4.7323 838.6062 [1] 161.3938 1004.7323 [1] 6.853714e-03 9.999990e+05 [1] "highestmid = 712.445526" [1] "done with initial extrapolation" [1] "done with interpolation" [1] "done with full extrapolation" [1] "vtspan = 50" [1] "done with masking" [1] "HIPPO1 RF03 CO2_AO2 range = 383.3,396.83" [1] "done outputting" [1] "done plotting" [1] "Plotting intervals" [1] "Excluding 28 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 28 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 28 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 28 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 28 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"