[1] "2025-05-13 11:00:34 MDT" options [1,] "file" "090108a" [2,] "flight" "RF01" [3,] "project" "HIPPO1" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "0" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "TRUE" [30,] "pcabforce" "-0.335,-0.378" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "posttoonly" [48,] "o2caltype" "posttoonly" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "FALSE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "FALSE" [64,] "icartt" "0" [65,] "icarttrev" "0" [66,] "mmsrev" "TRUE" [67,] "usespline" "4pt" [68,] "updnave" "090108a" [1] "Reading in flight and plotting intervals" Read 3 records [1] "Reading in /scr/raf/stephens/AO2DAT/090108a.mr" Read 2312 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.59 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.63 seconds" [1] "New JOGEST = 2.63 seconds" [1] "New VALVE SKIP = 23 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/090108a.hr" Read 9250 records [1] "HR FILE MATCHES" [1] "Converting hrdata statout" [1] "Tue May 13 11:00:34 AM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30055 description: HS CO2 = 324.38 O2 = -173.1" [1] "position 2 cylinder OK30057 description: LS CO2 = 400.7 O2 = -681.1" [1] "position 3 cylinder OK30053 description: LT CO2 = 405.42 O2 = -407" [1] "position 4 cylinder OK170199 description: WT CO2 = 384.86 O2 = -793.6" [1] 324.3832 400.6970 405.4160 384.8623 NA [1] -173.0979 -681.0920 -406.9880 -793.6387 NA [1] "Nominal linear calibrations:" [1] "co2scl = 0.688 co2off = 161.16 o2scla = -0.053 o2offa = -24.6" [1] "(dV/V)/(dXO2/XO2) = -3.961" [1] "(dV/V)/d(O2/N2) = -3.132" [1] "Reading in very high resolution timeseries" Read 46240 records [1] 46240 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 11:00:34 AM MDT 2025 done approxing mr variables" [1] "Tue May 13 11:00:35 AM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.132" [1] "o2scaleavenew_drelVdrelP = -3.961" [1] "median(o2scalenew) = -3.137" [1] "Empirical dV/V vs dP/P relationship =-3.173, r^2 =0, damping =0.801" [1] "Tue May 13 11:00:35 AM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "MASKING 20 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 11:00:38 AM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "RECALC TIME MATCHES" [1] "Tue May 13 11:00:38 AM MDT 2025 done recreating mr o2diffs" [1] "Removed 632 medium-rate record(s) > eco or < ico" [1] "from: 1" [1] "to: 605" [1] "from: 2286" [1] "to: 2312" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 519 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 956.234 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 953.655 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 953.733 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 23.946 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 9 [1] 36 [1] 38 [1] 38 [1] 52 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 19 8.672490 1244.99349 1019074.8 1 [2,] 20 8.672515 1288.20490 1020210.1 -1 [3,] 21 8.672540 1397.12770 1018698.3 1 [4,] 119 8.675031 847.70710 1017453.5 1 [5,] 120 8.675061 891.43322 1018255.1 -1 [6,] 121 8.675086 916.18618 1017249.6 1 [7,] 368 8.681652 874.35813 1011540.9 -1 [8,] 369 8.681681 1171.12738 1010610.1 1 [9,] 370 8.681712 1525.83791 1012170.3 -1 [10,] 434 8.683645 1733.10558 1010138.5 -1 [11,] 435 8.683674 925.97003 1008362.6 1 [12,] 436 8.683702 137.21618 1008455.7 -1 [13,] 498 8.685536 -70.35532 1006299.1 -1 [14,] 499 8.685566 235.97690 1006330.2 1 [15,] 500 8.685596 571.27001 1006931.5 -1 [16,] 578 8.687962 1428.30508 1004743.2 -1 [17,] 579 8.687993 817.54958 1003872.3 1 [18,] 580 8.688007 274.64278 1004671.8 -1 [19,] 581 8.687992 878.88005 1003817.9 1 [20,] 582 8.688022 217.93602 1004613.4 -1 [21,] 1280 8.709626 828.92654 994845.0 -1 [22,] 1284 8.709747 795.99831 994631.2 -1 [23,] 1285 8.709779 369.32479 993829.4 1 [24,] 1286 8.709809 -19.69710 993793.7 -1 [25,] 1348 8.711739 -108.94920 992313.6 -1 [26,] 1349 8.711771 501.83321 992381.9 1 [27,] 1350 8.711803 1198.88722 993629.9 -1 [28,] 1352 8.711864 1661.34552 993982.2 -1 [29,] 1414 8.713778 1621.75865 992413.3 -1 [30,] 1415 8.713808 1260.18057 990792.9 1 [31,] 1416 8.713840 895.20791 991659.3 -1 [32,] 1611 8.720062 889.16618 987664.3 1 [33,] 1612 8.720095 937.57322 988513.2 -1 [34,] 1613 8.720128 973.86329 987459.1 1 [35,] 1636 8.720879 1030.48285 988068.3 -1 [36,] 1637 8.720907 1199.76770 987035.6 1 [37,] 1638 8.720935 2023.52486 989096.6 -1 [38,] 1639 8.720970 4115.58034 986975.3 1 [39,] 1640 8.720997 4929.73644 991813.5 -1 [40,] 1641 8.721026 3904.86530 986924.9 1 [41,] 1642 8.721054 2324.66134 989154.7 -1 [42,] 1643 8.721083 1621.32698 986854.0 1 [43,] 1644 8.721112 1496.35034 988313.5 -1 [44,] 1672 8.721965 485.82170 987509.7 -1 [45,] 1673 8.721997 -898.75488 986479.2 1 [46,] 1674 8.722031 3048.26812 987472.7 -1 [47,] 1675 8.722063 7999.11965 986444.9 1 [48,] 1676 8.722095 -6184.72634 987438.8 -1 [49,] 1677 8.722127 -25590.16127 986406.3 1 [50,] 1678 8.722161 29404.67762 987420.6 -1 [51,] 1679 8.722193 100730.13134 986362.5 1 [52,] 1680 8.722227 -105237.05315 987355.3 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 1513 8.716884 82807.440 [2,] 1625 8.720526 252.887 [3,] 1639 8.720970 492.645 [4,] 1640 8.720997 552.899 [5,] 1641 8.721026 481.044 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 143.264 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 47.689 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 37.473 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 21.369 PER MEG" [1] 324.3832 400.6970 405.4160 384.8623 NA [1] -173.0979 -681.0920 -406.9880 -793.6387 NA [1] "Nominal linear calibrations:" [1] "co2scl = 0.711 co2off = 156.45 o2scla = -0.053 o2offa = -26.2" [1] "(dV/V)/(dXO2/XO2) = -3.987" [1] "(dV/V)/d(O2/N2) = -3.152" [1] "Finding cal and sample periods" [1] "Median Cal: 2.81 minutes" [1] "Average Cal: 2.8 minutes" [1] "Shortest Cal: 2.71 minutes" [1] "Longest Cal: 2.87 minutes" [1] "Reading in aircraft data" [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = 0" [1] "HS CO2 vs. PACAB: m = NA, r^2 = NA" [1] "LS CO2 vs. PACAB: m = NA, r^2 = NA" [1] "HS+LS LIH2O vs. PACAB: m = 0" [1] "HS LIH2O vs. PACAB: m = NA, r^2 = NA" [1] "LS LIH2O vs. PACAB: m = NA, r^2 = NA" [1] "HS+LS CO2 vs. LIH2O: m = 0" [1] "HS CO2 vs. LIH2O: m = NA, r^2 = NA" [1] "LS CO2 vs. LIH2O: m = NA, r^2 = NA" [1] "APCO2 vs. PACAB: m = -0.324, r^2 = 0.68" [1] "Correcting for PCAB effect on LI840 using concentration dependent specification = -0.000391 * DCO2 + -0.378" [1] "HS+LS CO2 vs. PACAB postcorr: m = 0" [1] "HS CO2 vs. PACAB postcorr: m = NA, r^2 = NA" [1] "LS CO2 vs. PACAB postcorr: m = NA, r^2 = NA" [1] "HS+LS LIH2O vs. PACAB postcorr: m = 0" [1] "HS LIH2O vs. PACAB postcorr: m = NA, r^2 = NA" [1] "LS LIH2O vs. PACAB postcorr: m = NA, r^2 = NA" [1] "HS+LS CO2 vs. LIH2O postcorr: m = 0" [1] "HS CO2 vs. LIH2O postcorr: m = NA, r^2 = NA" [1] "LS CO2 vs. LIH2O postcorr: m = NA, r^2 = NA" [1] "APCO2 vs. PACAB postcorr: m = 0.121, r^2 = 0.22" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 0" [1] "HS O2 vs. PACAB: m = NA, r^2 = NA" [1] "LS O2 vs. PACAB: m = NA, r^2 = NA" [1] "HS+LS O2 vs. LIH2O: m = 0" [1] "HS O2 vs. LIH2O: m = NA, r^2 = NA" [1] "LS O2 vs. LIH2O: m = NA, r^2 = NA" [1] "HS+LS O2 vs. PAO2: m = 0" [1] "HS O2 vs. PAO2: m = NA, r^2 = NA" [1] "LS O2 vs. PAO2: m = NA, r^2 = NA" [1] "HS+LS O2 vs. TPBOX: m = 0" [1] "HS O2 vs. TPBOX: m = NA, r^2 = NA" [1] "LS O2 vs. TPBOX: m = NA, r^2 = NA" [1] "APO vs. PACAB: m = -1.4, r^2 = 0.22" [1] "APO vs. PAO2: m = -24.5, r^2 = 0.21" [1] "APO vs. TPBOX: m = 12.1, r^2 = 0.27" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 105, r^2 = 1" [1] "LS CO2 vs. LiCor Cell P: m = 96.7, r^2 = 1" [1] "HS CO2 vs. CO2 Vol P: m = 2.75, r^2 = 1" [1] "LS CO2 vs. CO2 Vol P: m = 2.3, r^2 = 1" [1] "HS CO2 vs. SLOPE: m = 5.99, r^2 = 1" [1] "LS CO2 vs. SLOPE: m = -37.4, r^2 = 1" [1] "HS O2 vs. O2 Vol P: m = -28, r^2 = 1" [1] "LS O2 vs. O2 Vol P: m = -16.8, r^2 = 1" [1] "HS O2 vs. O2 Cell T: m = 16.1, r^2 = 1" [1] "LS O2 vs. O2 Cell T: m = 9.48, r^2 = 1" [1] "HS O2 vs. CO2 Vol P: m = -31.7, r^2 = 1" [1] "LS O2 vs. CO2 Vol P: m = -19.7, r^2 = 1" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = NA, r^2 = NA" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = NA, r^2 = NA" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -31.7, r^2 = 1" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -19.7, r^2 = 1" [1] "HS O2 vs. LIH2O: m = -3980, r^2 = 1" [1] "LS O2 vs. LIH2O: m = 717, r^2 = 1" [1] "HS O2 vs. SLOPE: m = 1.6, r^2 = 1" [1] "LS O2 vs. SLOPE: m = -7.77, r^2 = 1" [1] "HS CO2 vs. Time: m = 103.5, r^2 = 1" [1] "LS CO2 vs. Time: m = 89.045, r^2 = 1" [1] "HS CO2 vs. Cylinder T: m = -3.146, r^2 = 1" [1] "LS CO2 vs. Cylinder T: m = -2.733, r^2 = 1" [1] "HS CO2 vs. Regulator T: m = -1.02, r^2 = 1" [1] "LS CO2 vs. Regulator T: m = -0.888, r^2 = 1" [1] "HS CO2 vs. Ref. Volumes T: m = -5.814, r^2 = 1" [1] "LS CO2 vs. Ref. Volumes T: m = -4.581, r^2 = 1" [1] "HS CO2 vs. Manifold T: m = -1.377, r^2 = 1" [1] "LS CO2 vs. Manifold T: m = -1.083, r^2 = 1" [1] "HS CO2 vs. Pump Box T: m = -1.93, r^2 = 1" [1] "LS CO2 vs. Pump Box T: m = -1.135, r^2 = 1" [1] "HS O2 vs. Cylinder T: m = 36.275, r^2 = 1" [1] "LS O2 vs. Cylinder T: m = 23.439, r^2 = 1" [1] "HS O2 vs. Regulator T: m = 11.765, r^2 = 1" [1] "LS O2 vs. Regulator T: m = 7.617, r^2 = 1" [1] "HS O2 vs. Ref. Volumes T: m = 67.051, r^2 = 1" [1] "LS O2 vs. Ref. Volumes T: m = 39.279, r^2 = 1" [1] "HS O2 vs. Manifold T: m = 15.883, r^2 = 1" [1] "LS O2 vs. Manifold T: m = 9.286, r^2 = 1" [1] "HS O2 vs. Pump Box T: m = 22.254, r^2 = 1" [1] "LS O2 vs. Pump Box T: m = 9.733, r^2 = 1" [1] "HS CO2 vs. WT P: m = 0.535, r^2 = 1" [1] "LS CO2 vs. WT P: m = -0.822, r^2 = 1" [1] "HS CO2 vs. SP P: m = NA, r^2 = NA" [1] "HS CO2 vs. PACAB comb with SP P: m = NA, r^2 = NA" [1] "HS CO2 vs. SP P comb with PACAB: m = NA, r^2 = NA" [1] "LS CO2 vs. SP P: m = NA, r^2 = NA" [1] "LS CO2 vs. PACAB comb with SP P: m = NA, r^2 = NA" [1] "LS CO2 vs. SP P comb with PACAB: m = NA, r^2 = NA" [1] "HS CO2 vs. WT FL: m = -1.011, r^2 = 1" [1] "LS CO2 vs. WT FL: m = -0.819, r^2 = 1" [1] "HS CO2 vs. SP FL: m = -1.311, r^2 = 1" [1] "LS CO2 vs. SP FL: m = -1.204, r^2 = 1" [1] "HS O2 vs. SLPDIFF: m = -2.91, r^2 = 1" [1] "LS O2 vs. SLPDIFF: m = -9.499, r^2 = 1" [1] "HS O2 vs. WT P: m = -6.165, r^2 = 1" [1] "LS O2 vs. WT P: m = 7.046, r^2 = 1" [1] "HS O2 vs. SP P: m = -9.627, r^2 = 1" [1] "LS O2 vs. SP P: m = 5.15, r^2 = 1" [1] "HS O2 vs. WT FL: m = 11.66, r^2 = 1" [1] "LS O2 vs. WT FL: m = 7.021, r^2 = 1" [1] "HS O2 vs. SP FL: m = 15.113, r^2 = 1" [1] "LS O2 vs. SP FL: m = 10.328, r^2 = 1" [1] "Plotting calibration shapes" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.4" [1] "Median all HS CO2 SD = 0.42" [1] "Median all LS CO2 SD = 0.39" [1] "Median all LT CO2 SD = NA" [1] "Median all WT CO2 SD = NA" [1] "Median all HS or LS CO2 SD = 0.4" [1] "Median all cal O2 SD = 3.02" [1] "Median all HS O2 SD = 3.2" [1] "Median all LS O2 SD = 2.91" [1] "Median all LT O2 SD = NA" [1] "Median all WT O2 SD = NA" [1] "Median all HS or LS O2 SD = 3.02" [1] "Median all cal CO2 Slope = -0.02" [1] "Median all HS CO2 Slope = -0.14" [1] "Median all LS CO2 Slope = 0.03" [1] "Median all LT CO2 Slope = NA" [1] "Median all WT CO2 Slope = NA" [1] "Median all HS or LS CO2 Slope = -0.02" [1] "Median all cal O2 Slope = 0.9" [1] "Median all HS O2 Slope = 1.66" [1] "Median all LS O2 Slope = 0.9" [1] "Median all LT O2 Slope = NA" [1] "Median all WT O2 Slope = NA" [1] "Median all HS or LS O2 Slope = 0.9" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 5.9 per meg" [1] "Initial O2 Calibration Offset = -4.17 per meg" [1] "SD of O2 Calibration (post-takeoff) = 5.9 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = -4.17 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using HIPPO1-2 inlet volumes" [1] "before any lag: 58061.15 62400.41" [1] "Time lag adjustments = 0 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 36.7 at 112.5 sccm" [1] "Median O2 delay + tlagff = 37.5 at 112.5 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 35.7 at 112.5 sccm" [1] "Median O2 delay from 3-way + tlagff = 36.6 at 112.5 sccm" [1] "after calc and ff lag: 58023.57 62360.87" [1] "2025-05-13 11:00:44 MDT" [1] "Calculating 1-sec interpolated values" [1] "Calculating 10-sec medians" [1] "Plotting aircraft data" [1] "Outputting data files" [1] "Plotting intervals" [1] "Excluding 14 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 14 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"