[1] "2025-05-13 10:58:29 MDT" options [1,] "file" "081213a" [2,] "flight" "TF01" [3,] "project" "HIPPO1" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "5e+06" [7,] "spspco" "5e+06" [8,] "o2gco" "5e+06" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "0" [20,] "tlagff1" "0" [21,] "tlagopt" "FALSE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "FALSE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "FALSE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "TRUE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "posttoonly" [48,] "o2caltype" "posttoonly" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "TRUE" [61,] "plotxsect" "TRUE" [62,] "reavecals" "FALSE" [63,] "locate" "FALSE" [64,] "icartt" "0" [65,] "icarttrev" "0" [66,] "mmsrev" "TRUE" [67,] "usespline" "4pt" [68,] "updnave" "081213a" [1] "Reading in flight and plotting intervals" Read 3 records [1] "Reading in /scr/raf/stephens/AO2DAT/081213a.mr" Read 4086 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.25 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.21 seconds" [1] "New JOGEST = 2.21 seconds" [1] "New VALVE SKIP = 27 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/081213a.hr" Read 16344 records [1] "HR FILE MATCHES" [1] "Converting hrdata statout" [1] "Tue May 13 10:58:29 AM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 3141 records Read 536 records Read 2575 records [1] "No O2 data for JJ8856 fill 2" [1] "No O2 data for JJ8578 fill 2" [1] "No O2 data for JJ8578 fill 3" [1] "No O2 data for JJ8578 fill 4" [1] "No O2 data for JJ651 fill 2" [1] "No O2 data for JJ651 fill 3" [1] "No O2 data for JJ651 fill 4" [1] "No O2 data for JJ651 fill 5" [1] "No O2 data for JJ22398 fill 3" [1] "No O2 data for JJ22398 fill 5" [1] "No O2 data for JA02405 fill 1" [1] "No O2 data for JA02405 fill 2" [1] "No O2 data for JA02405 fill 3" [1] "No O2 data for JA02405 fill 4" [1] "No O2 data for JA02385 fill 2" [1] "No O2 data for JA02385 fill 3" [1] "No O2 data for JA02385 fill 4" [1] "No O2 data for JA02379 fill 2" [1] "No O2 data for JA02379 fill 3" [1] "No O2 data for JA02379 fill 4" [1] "No O2 data for JA02379 fill 5" [1] "No O2 data for JA02377 fill 2" [1] "No O2 data for JA02377 fill 3" [1] "No O2 data for JA02377 fill 4" [1] "No O2 data for JA02347 fill 1" [1] "No O2 data for JA02347 fill 3" [1] "No O2 data for JA02347 fill 4" [1] "No O2 data for JA02347 fill 5" [1] "No O2 data for FA02361 fill 4" [1] "No O2 data for FA02360 fill 3" [1] "No O2 data for CC328855 fill 1" [1] "No O2 data for CC328855 fill 2" Read 536 records [1] "position 1 cylinder OK30055 description: HS CO2 = 324.37 O2 = -169.8" [1] "position 2 cylinder OK30057 description: LS CO2 = 400.69 O2 = -677.4" [1] "position 3 cylinder OK30053 description: LT CO2 = 405.42 O2 = -401.1" [1] "position 4 cylinder OK170199 description: WT CO2 = 371.24 O2 = -553.4" [1] 324.3685 400.6932 405.4176 371.2440 NA [1] -169.8085 -677.3721 -401.1363 -553.3700 NA [1] "Nominal linear calibrations:" [1] "co2scl = 0.909 co2off = -73.56 o2scla = -0.054 o2offa = 1783.1" [1] "(dV/V)/(dXO2/XO2) = -3.903" [1] "(dV/V)/d(O2/N2) = -3.085" [1] "Reading in very high resolution timeseries" Read 81720 records [1] 81720 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 10:58:32 AM MDT 2025 done approxing mr variables" [1] "Tue May 13 10:58:33 AM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -3.085" [1] "o2scaleavenew_drelVdrelP = -3.903" [1] "median(o2scalenew) = -3.09" [1] "Empirical dV/V vs dP/P relationship =-2.335, r^2 =0, damping =0.598" [1] "Tue May 13 10:58:33 AM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "MASKING 20 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 10:58:39 AM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "RECALC TIME MATCHES" [1] "Tue May 13 10:58:39 AM MDT 2025 done recreating mr o2diffs" [1] "Removed 78 medium-rate record(s) from screenall period" [1] "from: 1768" [1] "to: 1845" [1] "Screening 2241 MR O2 values when lamp off" [1] "Screening 45155 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 208.747 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 217.793 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 218.067 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -34.492 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 0 [1] 0 [1] 0 [1] 0 [1] 0 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 2838 348.9013 582.378 [2,] 2847 348.9016 645.700 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 208.747 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 217.793 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 218.067 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -34.492 PER MEG" [1] "MAX ORIG-PDPRCORR DIFFERENCE > 200" [1] 348.8731 366.0000 [1] "Screened 2241 O2 values from screeno2 period 348.873147 to 366" [1] 324.3685 400.6932 405.4176 371.2440 NA [1] -169.8085 -677.3721 -401.1363 -553.3700 NA [1] "O2 SCALE AFTER FILTERING CHANGED BY MORE THAN 10%" [1] -0.05365752 -0.07488490 [1] "Nominal linear calibrations:" [1] "co2scl = 0.909 co2off = -73.56 o2scla = -0.075 o2offa = 2585.9" [1] "(dV/V)/(dXO2/XO2) = -2.796" [1] "(dV/V)/d(O2/N2) = -2.211" [1] "Finding cal and sample periods" [1] "Median Cal: 3.33 minutes" [1] "Average Cal: 3.13 minutes" [1] "Shortest Cal: 2.81 minutes" [1] "Longest Cal: 3.5 minutes" [1] "Not reading in any aircraft data" [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.0478" [1] "HS CO2 vs. PACAB: m = -0.0453, r^2 = 0.49" [1] "LS CO2 vs. PACAB: m = -0.0502, r^2 = 0.5" [1] "HS+LS LIH2O vs. PACAB: m = 0.00769" [1] "HS LIH2O vs. PACAB: m = 0.00766, r^2 = 0.72" [1] "LS LIH2O vs. PACAB: m = 0.00773, r^2 = 0.87" [1] "HS+LS CO2 vs. LIH2O: m = -7.72" [1] "HS CO2 vs. LIH2O: m = -6.73, r^2 = 0.87" [1] "LS CO2 vs. LIH2O: m = -8.71, r^2 = 1" [1] "APCO2 vs. PACAB: m = 1.87, r^2 = 0.05" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 3.3" [1] "HS O2 vs. PACAB: m = -6.29, r^2 = 1" [1] "LS O2 vs. PACAB: m = 12.9, r^2 = 1" [1] "HS+LS O2 vs. LIH2O: m = 262" [1] "HS O2 vs. LIH2O: m = -3590, r^2 = 1" [1] "LS O2 vs. LIH2O: m = 4120, r^2 = 1" [1] "HS+LS O2 vs. PAO2: m = 75.4" [1] "HS O2 vs. PAO2: m = -152, r^2 = 1" [1] "LS O2 vs. PAO2: m = 303, r^2 = 1" [1] "HS+LS O2 vs. TPBOX: m = -479" [1] "HS O2 vs. TPBOX: m = 47.2, r^2 = 1" [1] "LS O2 vs. TPBOX: m = -1010, r^2 = 1" [1] "APO vs. PACAB: m = -19.7, r^2 = 0.05" [1] "APO vs. PAO2: m = -437, r^2 = 0.07" [1] "APO vs. TPBOX: m = 68.8, r^2 = 0.07" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = -2.03, r^2 = 0.21" [1] "LS CO2 vs. LiCor Cell P: m = -2.33, r^2 = 0.24" [1] "HS CO2 vs. CO2 Vol P: m = -0.339, r^2 = 0.25" [1] "LS CO2 vs. CO2 Vol P: m = -0.361, r^2 = 0.25" [1] "HS CO2 vs. SLOPE: m = -2.56, r^2 = 0.24" [1] "LS CO2 vs. SLOPE: m = 1.91, r^2 = 0.21" [1] "HS O2 vs. O2 Vol P: m = -308, r^2 = 0.4" [1] "LS O2 vs. O2 Vol P: m = -207, r^2 = 0.2" [1] "HS O2 vs. O2 Cell T: m = 34.7, r^2 = 0.03" [1] "LS O2 vs. O2 Cell T: m = -44.2, r^2 = 0.06" [1] "HS O2 vs. CO2 Vol P: m = -92.1, r^2 = 0.13" [1] "LS O2 vs. CO2 Vol P: m = -127, r^2 = 0.22" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = -1050, r^2 = 0.95" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = -953, r^2 = 1" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -92.1, r^2 = 0.13" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -127, r^2 = 0.22" [1] "HS O2 vs. LIH2O: m = -1500, r^2 = 0.08" [1] "LS O2 vs. LIH2O: m = -1470, r^2 = 0.09" [1] "HS O2 vs. SLOPE: m = 16.8, r^2 = 0.47" [1] "LS O2 vs. SLOPE: m = -23.4, r^2 = 0.08" [1] "HS CO2 vs. Time: m = 33.252, r^2 = 0.81" [1] "LS CO2 vs. Time: m = 36.204, r^2 = 0.81" [1] "HS CO2 vs. Cylinder T: m = -1.46, r^2 = 0.26" [1] "LS CO2 vs. Cylinder T: m = -1.766, r^2 = 0.342" [1] "HS CO2 vs. Regulator T: m = 0.113, r^2 = 0.03" [1] "LS CO2 vs. Regulator T: m = 0.114, r^2 = 0.03" [1] "HS CO2 vs. Ref. Volumes T: m = -0.539, r^2 = 0.27" [1] "LS CO2 vs. Ref. Volumes T: m = -0.579, r^2 = 0.275" [1] "HS CO2 vs. Manifold T: m = -0.069, r^2 = 0.02" [1] "LS CO2 vs. Manifold T: m = -0.054, r^2 = 0.013" [1] "HS CO2 vs. Pump Box T: m = 0.17, r^2 = 0.33" [1] "LS CO2 vs. Pump Box T: m = 0.175, r^2 = 0.365" [1] "HS O2 vs. Cylinder T: m = -2673.899, r^2 = 0.33" [1] "LS O2 vs. Cylinder T: m = -2155.37, r^2 = 0.408" [1] "HS O2 vs. Regulator T: m = 591.601, r^2 = 0.66" [1] "LS O2 vs. Regulator T: m = 339.197, r^2 = 0.39" [1] "HS O2 vs. Ref. Volumes T: m = -2.448, r^2 = 0" [1] "LS O2 vs. Ref. Volumes T: m = -64.502, r^2 = 0.034" [1] "HS O2 vs. Manifold T: m = 108.607, r^2 = 0.3" [1] "LS O2 vs. Manifold T: m = 50.838, r^2 = 0.054" [1] "HS O2 vs. Pump Box T: m = 225.651, r^2 = 0.99" [1] "LS O2 vs. Pump Box T: m = 67.729, r^2 = 0.076" [1] "HS CO2 vs. WT P: m = -0.036, r^2 = 0.4" [1] "LS CO2 vs. WT P: m = -0.044, r^2 = 0.48" [1] "HS CO2 vs. SP P: m = -0.0326, r^2 = 0.32" [1] "HS CO2 vs. PACAB comb with SP P: m = -0.163, r^2 = 0.71" [1] "HS CO2 vs. SP P comb with PACAB: m = 0.108, r^2 = 0.71" [1] "LS CO2 vs. SP P: m = -0.0498, r^2 = 0.54" [1] "LS CO2 vs. PACAB comb with SP P: m = -0.005, r^2 = 0.54" [1] "LS CO2 vs. SP P comb with PACAB: m = -0.045, r^2 = 0.54" [1] "HS CO2 vs. WT FL: m = -0.226, r^2 = 0.2" [1] "LS CO2 vs. WT FL: m = -0.241, r^2 = 0.24" [1] "HS CO2 vs. SP FL: m = -0.102, r^2 = 0.03" [1] "LS CO2 vs. SP FL: m = -0.112, r^2 = 0.035" [1] "HS O2 vs. SLPDIFF: m = 3.218, r^2 = 0.02" [1] "LS O2 vs. SLPDIFF: m = 0.389, r^2 = 0.001" [1] "HS O2 vs. WT P: m = -24.174, r^2 = 0.96" [1] "LS O2 vs. WT P: m = -24.416, r^2 = 0.831" [1] "HS O2 vs. SP P: m = -21.221, r^2 = 0.94" [1] "LS O2 vs. SP P: m = -28.984, r^2 = 0.885" [1] "HS O2 vs. WT FL: m = 6.728, r^2 = 0" [1] "LS O2 vs. WT FL: m = 8.386, r^2 = 0.003" [1] "HS O2 vs. SP FL: m = 36.003, r^2 = 0.04" [1] "LS O2 vs. SP FL: m = 38.894, r^2 = 0.056" [1] "Plotting calibration shapes" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.27" [1] "Median all HS CO2 SD = 0.26" [1] "Median all LS CO2 SD = 0.26" [1] "Median all LT CO2 SD = 0.27" [1] "Median all WT CO2 SD = 0.3" [1] "Median all HS or LS CO2 SD = 0.26" [1] "Median all cal O2 SD = 210.55" [1] "Median all HS O2 SD = 196.48" [1] "Median all LS O2 SD = 219.98" [1] "Median all LT O2 SD = 209.27" [1] "Median all WT O2 SD = 214.08" [1] "Median all HS or LS O2 SD = 206.74" [1] "Median all cal CO2 Slope = -0.01" [1] "Median all HS CO2 Slope = 0.01" [1] "Median all LS CO2 Slope = 0" [1] "Median all LT CO2 Slope = -0.02" [1] "Median all WT CO2 Slope = -0.02" [1] "Median all HS or LS CO2 Slope = 0.01" [1] "Median all cal O2 Slope = 0.15" [1] "Median all HS O2 Slope = -5.4" [1] "Median all LS O2 Slope = -0.19" [1] "Median all LT O2 Slope = 2.96" [1] "Median all WT O2 Slope = 7.9" [1] "Median all HS or LS O2 Slope = -2.84" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 48.02 per meg" [1] "Initial O2 Calibration Offset = -91.24 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using HIPPO1-2 inlet volumes" [1] "before any lag: 70741.21 80516.68" [1] "Time lag adjustments = 0 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 19.5 at 221.6 sccm" [1] "Median O2 delay + tlagff = 20.3 at 221.6 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 19.3 at 221.6 sccm" [1] "Median O2 delay from 3-way + tlagff = 20.1 at 221.6 sccm" [1] "after calc and ff lag: 70721.08 80496.52" [1] "2025-05-13 10:58:51 MDT" [1] "Screened 164 1-Hz values because of data gaps at:" [1] 348.8718 348.8718 348.8719 348.8719 348.8719 348.8719 348.8719 348.8719 [9] 348.8719 348.8719 348.8719 348.8720 348.8720 348.8720 348.8720 348.8720 [17] 348.8720 348.8720 348.8720 348.8720 348.8721 348.8721 348.8721 348.8721 [25] 348.8721 348.8721 348.8721 348.8721 348.8722 348.8722 348.8722 348.8722 [33] 348.8722 348.8722 348.8722 348.8722 348.8722 348.8723 348.8723 348.8723 [41] 348.8723 348.8723 348.8723 348.8723 348.8723 348.8723 348.8724 348.8724 [49] 348.8724 348.8724 348.8724 348.8724 348.8724 348.8724 348.8725 348.8725 [57] 348.8725 348.8725 348.8725 348.8725 348.8725 348.8725 348.8725 348.8726 [65] 348.8726 348.8726 348.8726 348.8726 348.8726 348.8726 348.8726 348.8727 [73] 348.8727 348.8727 348.8727 348.8727 348.8727 348.8727 348.8727 348.8727 [81] 348.8728 348.8728 348.8728 348.8728 348.8728 348.8728 348.8728 348.8728 [89] 348.8728 348.8729 348.8729 348.8729 348.8729 348.8729 348.8729 348.8729 [97] 348.8729 348.8730 348.8730 348.8730 348.8730 348.8730 348.8730 348.8730 [105] 348.8730 348.8730 348.8731 348.8731 348.8731 348.8731 348.8731 348.8731 [113] 348.8731 348.8731 348.8731 348.8732 348.8732 348.8732 348.8732 348.8732 [121] 348.8732 348.8732 348.8732 348.8733 348.8733 348.8733 348.8733 348.8733 [129] 348.8733 348.8733 348.8733 348.8733 348.8734 348.8734 348.8734 348.8734 [137] 348.8734 348.8734 348.8734 348.8734 348.8734 348.8735 348.8735 348.8735 [145] 348.8735 348.8735 348.8735 348.8735 348.8735 348.8736 348.8736 348.8736 [153] 348.8736 348.8736 348.8736 348.8736 348.8736 348.8736 348.8737 348.8737 [161] 348.8737 348.8737 348.8737 348.8737 [1] "Plotting aircraft data" [1] "Outputting data files" [1] "Plotting intervals" [1] "making html" [1] "making index html"