[1] "2025-05-13 10:38:02 MDT" options [1,] "file" "080514a" [2,] "flight" "RF11" [3,] "project" "START08" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "7" [20,] "tlagff1" "0" [21,] "tlagopt" "TRUE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "TRUE" [26,] "vxavail" "TRUE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "TRUE" [39,] "inpopt" "FALSE" [40,] "inpvals" "48,-14,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "posttoonly" [48,] "o2caltype" "posttoonly" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "FALSE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "FALSE" [64,] "icartt" "0" [65,] "icarttrev" "0" [66,] "mmsrev" "TRUE" [67,] "usespline" "4pt" [68,] "updnave" "080514a" [1] "Reading in flight and plotting intervals" Read 7 records [1] "Reading in /scr/raf/stephens/AO2DAT/080514a.mr" Read 8972 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.59 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.66 seconds" [1] "New JOGEST = 2.66 seconds" [1] "New VALVE SKIP = 23 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/080514a.hr" Read 35894 records [1] "HR FILE LENGTH NOT NSWITCH * MRDATA FILE LENGTH" [1] 8972 35892 [1] "Converting hrdata statout" [1] "Tue May 13 10:38:02 AM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30055 description: HS CO2 = 352.87 O2 = -234.1" [1] "position 2 cylinder OK30057 description: LS CO2 = 408.16 O2 = -499" [1] "position 3 cylinder OK30053 description: LT CO2 = 405.44 O2 = -354.8" [1] "position 4 cylinder OK170199 description: WT CO2 = 367.69 O2 = -568.5" [1] 352.8655 408.1609 405.4354 367.6928 NA [1] -234.1411 -499.0321 -354.7771 -568.5032 NA [1] "Nominal linear calibrations:" [1] "co2scl = 1.053 co2off = 1.24 o2scla = -0.309 o2offa = -372" [1] "(dV/V)/(dXO2/XO2) = -0.678" [1] "(dV/V)/d(O2/N2) = -0.536" [1] "Reading in very high resolution timeseries" Read 179460 records [1] 179460 [1] "VHR FILE LENGTH NOT 5 * NSWITCH * MRDATA FILE LENGTH" [1] 8972 35892 179460 [1] "REMOVING LEADING OR TRAILING VHR JOG(S) AT:" [1] 179441 179442 179443 179444 179445 179446 179447 179448 179449 179450 [11] 179451 179452 179453 179454 179455 179456 179457 179458 179459 179460 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 10:38:03 AM MDT 2025 done approxing mr variables" [1] "Tue May 13 10:38:04 AM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -0.536" [1] "o2scaleavenew_drelVdrelP = -0.678" [1] "median(o2scalenew) = -0.54" [1] "Empirical dV/V vs dP/P relationship =-0.99, r^2 =0.001, damping =1.46" [1] "Tue May 13 10:38:04 AM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "MASKING 20 VHR ROWS TO MAKE JOGS EVEN FOR SHAPE CALCS" [1] "Plotting Jog Shapes" [1] "Tue May 13 10:38:25 AM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "RECALC TIME MATCHES" [1] "Tue May 13 10:38:25 AM MDT 2025 done recreating mr o2diffs" [1] "Removed 79 medium-rate record(s) > eco or < ico" [1] "from: 8894" [1] "to: 8972" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 360 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) -95.063 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) -102.559 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) -103.931 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 7.105 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 6 [1] 6 [1] 18 [1] 18 [1] 22 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 87 135.7006 -1093.0193 1020644.2 -1 [2,] 468 135.7126 -998.4453 1018986.4 1 [3,] 469 135.7126 -970.2968 1017874.4 -1 [4,] 470 135.7127 -953.9012 1018777.2 1 [5,] 899 135.7261 -1056.9700 1011856.7 -1 [6,] 983 135.7287 -1054.6092 1010306.1 -1 [7,] 1799 135.7542 -906.5067 1002674.3 -1 [8,] 2717 135.7823 -988.9656 996340.2 -1 [9,] 3631 135.8104 -1000.8638 995302.3 -1 [10,] 4547 135.8384 -1022.7511 995665.2 -1 [11,] 4633 135.8410 -1058.0911 995729.1 -1 [12,] 5459 135.8665 -968.4116 998429.6 -1 [13,] 6385 135.8946 -912.1445 1002559.6 -1 [14,] 6544 135.8995 -1090.8505 1004109.4 1 [15,] 6545 135.8996 -1056.3924 1003157.0 -1 [16,] 6546 135.8996 -1077.3960 1004331.5 1 [17,] 7291 135.9227 -1039.8939 1003335.9 -1 [18,] 8203 135.9508 -1028.7019 997550.8 -1 [19,] 8890 135.9724 -213.5249 997723.6 1 [20,] 8891 135.9724 -733.5230 996782.3 -1 [21,] 8892 135.9724 -3527.8117 997714.8 1 [22,] 8893 135.9725 -1675.2793 996872.1 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 1572 135.7471 9155965000 [2,] 2017 135.7609 918097000000 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) -42.778 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) -41.038 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) -35.187 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) 7.105 PER MEG" [1] 352.8655 408.1609 405.4354 367.6928 NA [1] -234.1411 -499.0321 -354.7771 -568.5032 NA [1] "Nominal linear calibrations:" [1] "co2scl = 1.053 co2off = 1.23 o2scla = -0.304 o2offa = -365.4" [1] "(dV/V)/(dXO2/XO2) = -0.688" [1] "(dV/V)/d(O2/N2) = -0.544" [1] "Finding cal and sample periods" [1] "Median Cal: 3.41 minutes" [1] "Average Cal: 3.42 minutes" [1] "Shortest Cal: 3.32 minutes" [1] "Longest Cal: 3.56 minutes" [1] "Reading in aircraft data" [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = 0.00108" [1] "HS CO2 vs. PACAB: m = 0.000738, r^2 = 0.35" [1] "LS CO2 vs. PACAB: m = 0.00142, r^2 = 0.68" [1] "HS+LS LIH2O vs. PACAB: m = 0.000181" [1] "HS LIH2O vs. PACAB: m = 0.000182, r^2 = 0.87" [1] "LS LIH2O vs. PACAB: m = 0.00018, r^2 = 0.71" [1] "HS+LS CO2 vs. LIH2O: m = 5.78" [1] "HS CO2 vs. LIH2O: m = 4.61, r^2 = 0.82" [1] "LS CO2 vs. LIH2O: m = 6.95, r^2 = 0.79" [1] "APCO2 vs. PACAB: m = -0.0342, r^2 = 0.02" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = 0.013" [1] "HS O2 vs. PACAB: m = 0.00417, r^2 = 0" [1] "LS O2 vs. PACAB: m = 0.0218, r^2 = 0.17" [1] "HS+LS O2 vs. LIH2O: m = 130" [1] "HS O2 vs. LIH2O: m = 168, r^2 = 0.19" [1] "LS O2 vs. LIH2O: m = 91.6, r^2 = 0.24" [1] "HS+LS O2 vs. PAO2: m = 8.91" [1] "HS O2 vs. PAO2: m = 13.6, r^2 = 0.86" [1] "LS O2 vs. PAO2: m = 4.18, r^2 = 0.16" [1] "HS+LS O2 vs. TPBOX: m = -1.89" [1] "HS O2 vs. TPBOX: m = -3.18, r^2 = 0.77" [1] "LS O2 vs. TPBOX: m = -0.608, r^2 = 0.03" [1] "APO vs. PACAB: m = 0.103, r^2 = 0.02" [1] "APO vs. PAO2: m = 9.04, r^2 = 0.09" [1] "APO vs. TPBOX: m = -3.43, r^2 = 0.06" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 1, r^2 = 0.64" [1] "LS CO2 vs. LiCor Cell P: m = 0.728, r^2 = 0.41" [1] "HS CO2 vs. CO2 Vol P: m = 0.135, r^2 = 0.7" [1] "LS CO2 vs. CO2 Vol P: m = 0.105, r^2 = 0.52" [1] "HS CO2 vs. SLOPE: m = 0.218, r^2 = 0" [1] "LS CO2 vs. SLOPE: m = -0.1, r^2 = 0" [1] "HS O2 vs. O2 Vol P: m = 11.3, r^2 = 0.89" [1] "LS O2 vs. O2 Vol P: m = -0.00564, r^2 = 0" [1] "HS O2 vs. O2 Cell T: m = -6.98, r^2 = 0.87" [1] "LS O2 vs. O2 Cell T: m = -1.24, r^2 = 0.04" [1] "HS O2 vs. CO2 Vol P: m = 1.88, r^2 = 0.15" [1] "LS O2 vs. CO2 Vol P: m = -1.15, r^2 = 0.07" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = -0.671, r^2 = 0" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = -0.955, r^2 = 0.01" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = 1.88, r^2 = 0.15" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -1.15, r^2 = 0.07" [1] "HS O2 vs. LIH2O: m = 203, r^2 = 0.34" [1] "LS O2 vs. LIH2O: m = 44.1, r^2 = 0.03" [1] "HS O2 vs. SLOPE: m = 0.488, r^2 = 0.04" [1] "LS O2 vs. SLOPE: m = 0.74, r^2 = 0.11" [1] "HS CO2 vs. Time: m = 4.861, r^2 = 0.78" [1] "LS CO2 vs. Time: m = 4.816, r^2 = 0.76" [1] "HS CO2 vs. Cylinder T: m = -0.161, r^2 = 0.01" [1] "LS CO2 vs. Cylinder T: m = -0.163, r^2 = 0.018" [1] "HS CO2 vs. Regulator T: m = -0.29, r^2 = 0.72" [1] "LS CO2 vs. Regulator T: m = -0.281, r^2 = 0.732" [1] "HS CO2 vs. Ref. Volumes T: m = 0.047, r^2 = 0.01" [1] "LS CO2 vs. Ref. Volumes T: m = -0.038, r^2 = 0.012" [1] "HS CO2 vs. Manifold T: m = -0.12, r^2 = 0.38" [1] "LS CO2 vs. Manifold T: m = -0.118, r^2 = 0.498" [1] "HS CO2 vs. Pump Box T: m = -0.076, r^2 = 0.43" [1] "LS CO2 vs. Pump Box T: m = -0.082, r^2 = 0.548" [1] "HS O2 vs. Cylinder T: m = -14.871, r^2 = 0.14" [1] "LS O2 vs. Cylinder T: m = -0.109, r^2 = 0" [1] "HS O2 vs. Regulator T: m = -7.472, r^2 = 0.53" [1] "LS O2 vs. Regulator T: m = 0.611, r^2 = 0.004" [1] "HS O2 vs. Ref. Volumes T: m = -7.23, r^2 = 0.35" [1] "LS O2 vs. Ref. Volumes T: m = -3.881, r^2 = 0.151" [1] "HS O2 vs. Manifold T: m = -5.358, r^2 = 0.82" [1] "LS O2 vs. Manifold T: m = -0.173, r^2 = 0.001" [1] "HS O2 vs. Pump Box T: m = -2.794, r^2 = 0.63" [1] "LS O2 vs. Pump Box T: m = 0.421, r^2 = 0.017" [1] "HS CO2 vs. WT P: m = 0.001, r^2 = 0.23" [1] "LS CO2 vs. WT P: m = 0.001, r^2 = 0.456" [1] "HS CO2 vs. SP P: m = 0.000934, r^2 = 0.6" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.05, r^2 = 0.71" [1] "HS CO2 vs. SP P comb with PACAB: m = -0.047, r^2 = 0.71" [1] "LS CO2 vs. SP P: m = 0.00122, r^2 = 0.58" [1] "LS CO2 vs. PACAB comb with SP P: m = -0.012, r^2 = 0.51" [1] "LS CO2 vs. SP P comb with PACAB: m = 0.014, r^2 = 0.51" [1] "HS CO2 vs. WT FL: m = 0.097, r^2 = 0.14" [1] "LS CO2 vs. WT FL: m = 0.06, r^2 = 0.098" [1] "HS CO2 vs. SP FL: m = -0.035, r^2 = 0.15" [1] "LS CO2 vs. SP FL: m = -0.046, r^2 = 0.376" [1] "HS O2 vs. SLPDIFF: m = 0.994, r^2 = 0.14" [1] "LS O2 vs. SLPDIFF: m = -0.89, r^2 = 0.155" [1] "HS O2 vs. WT P: m = 0.012, r^2 = 0.02" [1] "LS O2 vs. WT P: m = 0.027, r^2 = 0.182" [1] "HS O2 vs. SP P: m = 0.01, r^2 = 0.02" [1] "LS O2 vs. SP P: m = 0.026, r^2 = 0.17" [1] "HS O2 vs. WT FL: m = -2.178, r^2 = 0.08" [1] "LS O2 vs. WT FL: m = -1.243, r^2 = 0.051" [1] "HS O2 vs. SP FL: m = -0.361, r^2 = 0.02" [1] "LS O2 vs. SP FL: m = -1.15, r^2 = 0.282" [1] "Plotting calibration shapes" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.25" [1] "Median all HS CO2 SD = 0.24" [1] "Median all LS CO2 SD = 0.25" [1] "Median all LT CO2 SD = 0.25" [1] "Median all WT CO2 SD = 0.24" [1] "Median all HS or LS CO2 SD = 0.25" [1] "Median all cal O2 SD = 11.76" [1] "Median all HS O2 SD = 11.5" [1] "Median all LS O2 SD = 12.88" [1] "Median all LT O2 SD = 15.51" [1] "Median all WT O2 SD = 8.18" [1] "Median all HS or LS O2 SD = 12.04" [1] "Median all cal CO2 Slope = 0" [1] "Median all HS CO2 Slope = -0.02" [1] "Median all LS CO2 Slope = 0.03" [1] "Median all LT CO2 Slope = 0.03" [1] "Median all WT CO2 Slope = -0.02" [1] "Median all HS or LS CO2 Slope = 0" [1] "Median all cal O2 Slope = -0.63" [1] "Median all HS O2 Slope = -0.66" [1] "Median all LS O2 Slope = -0.72" [1] "Median all LT O2 Slope = 1.02" [1] "Median all WT O2 Slope = -0.63" [1] "Median all HS or LS O2 Slope = -0.72" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 18.04 per meg" [1] "Initial O2 Calibration Offset = 13.71 per meg" [1] "SD of O2 Calibration (post-takeoff) = 18.21 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = 24.29 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = 24.29 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using 1/2\" trap, 48\" u-tube, and no fridge trap START-08 inlet volumes" [1] "before any lag: 60301.24 84020.72" [1] "Time lag adjustments = 7 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 55 at 136.8 sccm" [1] "Median O2 delay + tlagff = 56.3 at 136.8 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 39.9 at 136.8 sccm" [1] "Median O2 delay from 3-way + tlagff = 41.3 at 136.8 sccm" [1] "after calc and ff lag: 60217.64 83938.12" [1] "2025-05-13 10:38:57 MDT" [1] "Calculating 1-sec interpolated values" [1] "Screened 41 1-Hz values because of data gaps at:" [1] 135.9716 135.9716 135.9716 135.9716 135.9716 135.9716 135.9716 135.9717 [9] 135.9717 135.9717 135.9717 135.9717 135.9717 135.9717 135.9717 135.9717 [17] 135.9718 135.9718 135.9718 135.9718 135.9718 135.9718 135.9718 135.9718 [25] 135.9719 135.9719 135.9719 135.9719 135.9719 135.9719 135.9719 135.9719 [33] 135.9719 135.9720 135.9720 135.9720 135.9720 135.9720 135.9720 135.9720 [41] 135.9720 [1] "Calculating 10-sec medians" [1] "2025-05-13 10:39:26 MDT" [1] "Optimizing inlet delay" [1] "2025-05-13 10:39:26 MDT" [1] "Reading in and averaging other CO2 data" [1] "2025-05-13 10:39:27 MDT" [1] "Reading in and averaging h2o mr data" Read 620049 records [1] "Individual fits = tlagff0, tlagff1, intercept, coef, sd" [1] "Individual CO2 fit to P/Flow = 7 0 -18.2 5.95 11.1" [1] "Individual CO2 2nd deriv fit to P/Flow = 7 0 -3 2.81 8.8" [1] "Individual VCSEL 2nd deriv fit to P/Flow = 7 0 -3.5 4.84 5" [1] "Individual CO2 fit to 1/Flow = 7 0 -402 54605.03 11.9" [1] "Individual CO2 2nd deriv fit to 1/Flow = 7 0 -353.1 48848.84 8.7" [1] "Individual VCSEL 2nd deriv fit to 1/Flow = 7 0 -366.7 51496.97 5" [1] "Combined Fits = tlagff0, tlagff1, intercept, P/flow coef, t-value, 1/flow coef, t-value, sd" [1] "Combined CO2 fit = 7 0 -243.5 8.24 0.85 1.6 0.26 12.2" [1] "Combined CO2 2nd derivative fit = 7 0 821.9 -5.4 -0.61 -5.87 -1.08 7.4" [1] "Combined VCSEL 2nd derivative fit = 7 0 -5.1 4.86 0.3 0.01 0 5" [1] "optimization not used: 60217.64 83938.12" [1] "Recalculating 1-sec interpolated values" [1] "Recalculating 10-sec medians" [1] "Plotting aircraft data" [1] "Calculating inlet pressure correction" [1] "optaporat= 9.42544158853875" [1] "Amp = -5.1754" [1] "r^2= 0.913" [1] "sd= 21.5" [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Plotting intervals" [1] "Excluding 3 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 3 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 3 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 3 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 3 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 3 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"