[1] "2025-05-13 10:31:36 MDT" options [1,] "file" "080501d" [2,] "flight" "RF06" [3,] "project" "START08" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "7" [20,] "tlagff1" "0" [21,] "tlagopt" "TRUE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "TRUE" [25,] "huavail" "TRUE" [26,] "vxavail" "TRUE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "TRUE" [39,] "inpopt" "FALSE" [40,] "inpvals" "43,-6,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "posttoonly" [48,] "o2caltype" "posttoonly" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "FALSE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "FALSE" [64,] "icartt" "0" [65,] "icarttrev" "0" [66,] "mmsrev" "TRUE" [67,] "usespline" "4pt" [68,] "updnave" "080501d" [1] "Reading in flight and plotting intervals" Read 7 records [1] "Reading in /scr/raf/stephens/AO2DAT/080501d.mr" Read 6521 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.51 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.52 seconds" [1] "New JOGEST = 2.52 seconds" [1] "New VALVE SKIP = 24 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/080501d.hr" Read 26088 records [1] "HR FILE LENGTH NOT NSWITCH * MRDATA FILE LENGTH" [1] 6521 26088 [1] "Converting hrdata statout" [1] "Tue May 13 10:31:36 AM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30055 description: HS CO2 = 352.86 O2 = -218.4" [1] "position 2 cylinder OK30057 description: LS CO2 = 408.17 O2 = -495.6" [1] "position 3 cylinder OK30053 description: LT CO2 = 405.45 O2 = -344.5" [1] "position 4 cylinder OK30054 description: WT CO2 = 392.62 O2 = -500.2" [1] 352.8621 408.1653 405.4507 392.6165 NA [1] -218.3817 -495.6150 -344.5317 -500.2312 NA [1] "Nominal linear calibrations:" [1] "co2scl = 1.053 co2off = 1.27 o2scla = -0.242 o2offa = -245.4" [1] "(dV/V)/(dXO2/XO2) = -0.865" [1] "(dV/V)/d(O2/N2) = -0.684" [1] "Reading in very high resolution timeseries" Read 130420 records [1] 130420 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 10:31:37 AM MDT 2025 done approxing mr variables" [1] "Tue May 13 10:31:38 AM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -0.684" [1] "o2scaleavenew_drelVdrelP = -0.865" [1] "median(o2scalenew) = -0.684" [1] "Empirical dV/V vs dP/P relationship =-0.763, r^2 =0.01, damping =0.883" [1] "Tue May 13 10:31:38 AM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "Plotting Jog Shapes" [1] "Tue May 13 10:31:52 AM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 1.79712000012842 SECONDS" [1] "Tue May 13 10:31:52 AM MDT 2025 done recreating mr o2diffs" [1] "Removed 79 medium-rate record(s) with accumulation errors" [1] "Removed 88 medium-rate record(s) > eco or < ico" [1] "from: 6355" [1] "to: 6442" [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 51.76 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) -41.13 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) -41.616 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -5.866 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 0 [1] 0 [1] 13 [1] 13 [1] 13 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 68 122.8233 -793.7356 1072697.5 -1 [2,] 678 122.8415 -787.8834 1059927.8 -1 [3,] 776 122.8445 -802.9049 1057199.3 -1 [4,] 1396 122.8626 -714.3856 1038165.6 -1 [5,] 2126 122.8836 -711.7502 1019144.9 -1 [6,] 2224 122.8865 -807.1207 1017183.0 -1 [7,] 2846 122.9047 -796.6548 1005525.4 -1 [8,] 3570 122.9257 -757.9990 991863.9 -1 [9,] 3670 122.9289 -854.5130 989584.0 -1 [10,] 4288 122.9468 -781.4900 975943.4 -1 [11,] 5004 122.9679 -784.5801 959875.8 -1 [12,] 5716 122.9889 -623.0383 947518.4 -1 [13,] 5724 122.9892 -844.9169 947113.4 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 56 122.8229 9.280975e+08 [2,] 5936 122.9953 9.575729e+03 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 51.76 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) -41.13 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) -41.616 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -5.866 PER MEG" [1] 352.8621 408.1653 405.4507 392.6165 NA [1] -218.3817 -495.6150 -344.5317 -500.2312 NA [1] "Nominal linear calibrations:" [1] "co2scl = 1.054 co2off = 1.14 o2scla = -0.244 o2offa = -245.2" [1] "(dV/V)/(dXO2/XO2) = -0.859" [1] "(dV/V)/d(O2/N2) = -0.679" [1] "Finding cal and sample periods" [1] "Median Cal: 3.77 minutes" [1] "Average Cal: 3.81 minutes" [1] "Shortest Cal: 3.73 minutes" [1] "Longest Cal: 4.27 minutes" [1] "Reading in aircraft data" [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = 0.0218" [1] "HS CO2 vs. PACAB: m = 0.00228, r^2 = 0.02" [1] "LS CO2 vs. PACAB: m = 0.0414, r^2 = 0.46" [1] "HS+LS LIH2O vs. PACAB: m = 0.00209" [1] "HS LIH2O vs. PACAB: m = -0.000569, r^2 = 0.05" [1] "LS LIH2O vs. PACAB: m = 0.00474, r^2 = 0.67" [1] "HS+LS CO2 vs. LIH2O: m = 4.34" [1] "HS CO2 vs. LIH2O: m = 4.28, r^2 = 0.64" [1] "LS CO2 vs. LIH2O: m = 4.4, r^2 = 0.25" [1] "APCO2 vs. PACAB: m = 2.03, r^2 = 0.12" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = -1.17" [1] "HS O2 vs. PACAB: m = -0.638, r^2 = 0.19" [1] "LS O2 vs. PACAB: m = -1.71, r^2 = 0.28" [1] "HS+LS O2 vs. LIH2O: m = -125" [1] "HS O2 vs. LIH2O: m = -77.3, r^2 = 0.03" [1] "LS O2 vs. LIH2O: m = -173, r^2 = 0.1" [1] "HS+LS O2 vs. PAO2: m = 3.3" [1] "HS O2 vs. PAO2: m = 5.31, r^2 = 0.1" [1] "LS O2 vs. PAO2: m = 1.28, r^2 = 0" [1] "HS+LS O2 vs. TPBOX: m = -0.88" [1] "HS O2 vs. TPBOX: m = -0.76, r^2 = 0.02" [1] "LS O2 vs. TPBOX: m = -0.999, r^2 = 0.02" [1] "APO vs. PACAB: m = -7.63, r^2 = 0.12" [1] "APO vs. PAO2: m = 33.2, r^2 = 0.09" [1] "APO vs. TPBOX: m = -14.6, r^2 = 0.07" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = 0.13, r^2 = 0.02" [1] "LS CO2 vs. LiCor Cell P: m = -0.694, r^2 = 0.2" [1] "HS CO2 vs. CO2 Vol P: m = 0.00451, r^2 = 0" [1] "LS CO2 vs. CO2 Vol P: m = -0.0712, r^2 = 0.1" [1] "HS CO2 vs. SLOPE: m = -0.241, r^2 = 0.01" [1] "LS CO2 vs. SLOPE: m = -0.771, r^2 = 0.33" [1] "HS O2 vs. O2 Vol P: m = 18, r^2 = 0.17" [1] "LS O2 vs. O2 Vol P: m = -1.18, r^2 = 0" [1] "HS O2 vs. O2 Cell T: m = -16.1, r^2 = 0.61" [1] "LS O2 vs. O2 Cell T: m = -4.76, r^2 = 0.13" [1] "HS O2 vs. CO2 Vol P: m = -24.4, r^2 = 0.64" [1] "LS O2 vs. CO2 Vol P: m = -9.17, r^2 = 0.3" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = 0.0343, r^2 = 0" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = 0.861, r^2 = 0.13" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = -24.4, r^2 = 0.64" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = -9.17, r^2 = 0.3" [1] "HS O2 vs. LIH2O: m = 676, r^2 = 0.35" [1] "LS O2 vs. LIH2O: m = -141, r^2 = 0.04" [1] "HS O2 vs. SLOPE: m = -2.12, r^2 = 0.29" [1] "LS O2 vs. SLOPE: m = 0.462, r^2 = 0.06" [1] "HS CO2 vs. Time: m = 2.035, r^2 = 0.88" [1] "LS CO2 vs. Time: m = 1.754, r^2 = 0.81" [1] "HS CO2 vs. Cylinder T: m = -0.025, r^2 = 0" [1] "LS CO2 vs. Cylinder T: m = 0.161, r^2 = 0.064" [1] "HS CO2 vs. Regulator T: m = 0.071, r^2 = 0.14" [1] "LS CO2 vs. Regulator T: m = 0.102, r^2 = 0.152" [1] "HS CO2 vs. Ref. Volumes T: m = 0.071, r^2 = 0.1" [1] "LS CO2 vs. Ref. Volumes T: m = -0.155, r^2 = 0.185" [1] "HS CO2 vs. Manifold T: m = 0.051, r^2 = 0.16" [1] "LS CO2 vs. Manifold T: m = -0.027, r^2 = 0.02" [1] "HS CO2 vs. Pump Box T: m = 0.014, r^2 = 0.05" [1] "LS CO2 vs. Pump Box T: m = 0.033, r^2 = 0.157" [1] "HS O2 vs. Cylinder T: m = -5.981, r^2 = 0" [1] "LS O2 vs. Cylinder T: m = -14.002, r^2 = 0.088" [1] "HS O2 vs. Regulator T: m = -3.009, r^2 = 0.01" [1] "LS O2 vs. Regulator T: m = -3.481, r^2 = 0.032" [1] "HS O2 vs. Ref. Volumes T: m = -33.957, r^2 = 0.6" [1] "LS O2 vs. Ref. Volumes T: m = -8.34, r^2 = 0.096" [1] "HS O2 vs. Manifold T: m = -7.371, r^2 = 0.09" [1] "LS O2 vs. Manifold T: m = 1.763, r^2 = 0.015" [1] "HS O2 vs. Pump Box T: m = 6.818, r^2 = 0.32" [1] "LS O2 vs. Pump Box T: m = 2.584, r^2 = 0.176" [1] "HS CO2 vs. WT P: m = 0.009, r^2 = 0.17" [1] "LS CO2 vs. WT P: m = 0.024, r^2 = 0.53" [1] "HS CO2 vs. SP P: m = -0.00612, r^2 = 0.1" [1] "HS CO2 vs. PACAB comb with SP P: m = -0.03, r^2 = 0.35" [1] "HS CO2 vs. SP P comb with PACAB: m = 0.024, r^2 = 0.35" [1] "LS CO2 vs. SP P: m = -0.00407, r^2 = 0.01" [1] "LS CO2 vs. PACAB comb with SP P: m = 0.039, r^2 = 0.37" [1] "LS CO2 vs. SP P comb with PACAB: m = -0.016, r^2 = 0.37" [1] "HS CO2 vs. WT FL: m = -0.045, r^2 = 0.48" [1] "LS CO2 vs. WT FL: m = -0.08, r^2 = 0.244" [1] "HS CO2 vs. SP FL: m = -0.042, r^2 = 0.49" [1] "LS CO2 vs. SP FL: m = -0.129, r^2 = 0.584" [1] "HS O2 vs. SLPDIFF: m = 2.307, r^2 = 0.21" [1] "LS O2 vs. SLPDIFF: m = -0.455, r^2 = 0.061" [1] "HS O2 vs. WT P: m = -4.206, r^2 = 0.92" [1] "LS O2 vs. WT P: m = -1, r^2 = 0.159" [1] "HS O2 vs. SP P: m = -2.267, r^2 = 0.9" [1] "LS O2 vs. SP P: m = 1.567, r^2 = 0.189" [1] "HS O2 vs. WT FL: m = 10.648, r^2 = 0.7" [1] "LS O2 vs. WT FL: m = 7.822, r^2 = 0.425" [1] "HS O2 vs. SP FL: m = 10.398, r^2 = 0.8" [1] "LS O2 vs. SP FL: m = 6.45, r^2 = 0.261" [1] "Plotting calibration shapes" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.24" [1] "Median all HS CO2 SD = 0.24" [1] "Median all LS CO2 SD = 0.25" [1] "Median all LT CO2 SD = 0.26" [1] "Median all WT CO2 SD = 0.26" [1] "Median all HS or LS CO2 SD = 0.24" [1] "Median all cal O2 SD = 13.83" [1] "Median all HS O2 SD = 13.85" [1] "Median all LS O2 SD = 13.49" [1] "Median all LT O2 SD = 16.21" [1] "Median all WT O2 SD = 14.17" [1] "Median all HS or LS O2 SD = 13.73" [1] "Median all cal CO2 Slope = 0.01" [1] "Median all HS CO2 Slope = 0" [1] "Median all LS CO2 Slope = 0.03" [1] "Median all LT CO2 Slope = 0.03" [1] "Median all WT CO2 Slope = -0.05" [1] "Median all HS or LS CO2 Slope = 0.01" [1] "Median all cal O2 Slope = 0.38" [1] "Median all HS O2 Slope = 0.59" [1] "Median all LS O2 Slope = 0.49" [1] "Median all LT O2 Slope = -2.65" [1] "Median all WT O2 Slope = -1.72" [1] "Median all HS or LS O2 Slope = 0.54" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 8.91 per meg" [1] "Initial O2 Calibration Offset = -25.38 per meg" [1] "SD of O2 Calibration (post-takeoff) = 3.14 per meg" [1] "Initial O2 Calibration Offset (from post-takeoff median) = -25.95 per meg" [1] "Last Preflight O2 Calibration Offset (from post-takeoff median) = -25.95 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using 1/2\" trap and 48\" u-tube START-08 inlet volumes" [1] "before any lag: 70882.91 87046.53" [1] "Time lag adjustments = 7 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 80.4 at 138.4 sccm" [1] "Median O2 delay + tlagff = 81.8 at 138.4 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 59.3 at 138.4 sccm" [1] "Median O2 delay from 3-way + tlagff = 60.7 at 138.4 sccm" [1] "after calc and ff lag: 70779.45 86942.35" [1] "2025-05-13 10:32:13 MDT" [1] "Calculating 1-sec interpolated values" [1] "Screened 83 1-Hz values because of data gaps at:" [1] 123.0063 123.0064 123.0064 123.0064 123.0064 123.0064 123.0064 123.0064 [9] 123.0064 123.0064 123.0065 123.0065 123.0065 123.0065 123.0065 123.0065 [17] 123.0065 123.0065 123.0066 123.0066 123.0066 123.0066 123.0066 123.0066 [25] 123.0066 123.0066 123.0066 123.0067 123.0067 123.0067 123.0067 123.0067 [33] 123.0067 123.0067 123.0067 123.0067 123.0068 123.0068 123.0068 123.0068 [41] 123.0068 123.0068 123.0068 123.0068 123.0069 123.0069 123.0069 123.0069 [49] 123.0069 123.0069 123.0069 123.0069 123.0069 123.0070 123.0070 123.0070 [57] 123.0070 123.0070 123.0070 123.0070 123.0070 123.0070 123.0071 123.0071 [65] 123.0071 123.0071 123.0071 123.0071 123.0071 123.0071 123.0072 123.0072 [73] 123.0072 123.0072 123.0072 123.0072 123.0072 123.0072 123.0072 123.0073 [81] 123.0073 123.0073 123.0073 [1] "Calculating 10-sec medians" [1] "2025-05-13 10:32:30 MDT" [1] "Optimizing inlet delay" [1] "2025-05-13 10:32:30 MDT" [1] "Reading in and averaging other CO2 data" [1] "2025-05-13 10:32:30 MDT" [1] "Reading in and averaging h2o mr data" Read 433224 records [1] "Individual fits = tlagff0, tlagff1, intercept, coef, sd" [1] "Individual CO2 fit to P/Flow = 7 0 19.1 -6.71 6.1" [1] "Individual CO2 2nd deriv fit to P/Flow = 7 0 -12.1 3.26 8.8" [1] "Individual VCSEL 2nd deriv fit to P/Flow = 7 0 -691 339.05 0" [1] "Individual CO2 fit to 1/Flow = 7 0 1492.7 -203396.72 12.2" [1] "Individual CO2 2nd deriv fit to 1/Flow = 7 0 10156.1 -1380949.65 6.3" [1] "Individual VCSEL 2nd deriv fit to 1/Flow = 7 0 -22700.9 3086669.85 0" [1] "Combined Fits = tlagff0, tlagff1, intercept, P/flow coef, t-value, 1/flow coef, t-value, sd" [1] "Combined CO2 fit = 7 0 -2535.8 -7.76 -4.15 18.82 1.37 3.8" [1] "Combined CO2 2nd derivative fit = 7 0 -10811 -1.23 -0.39 79.54 3.02 5.5" [1] "optimization not used: 70779.45 86942.35" [1] "Recalculating 1-sec interpolated values" [1] "Recalculating 10-sec medians" [1] "Plotting aircraft data" [1] "Calculating inlet pressure correction" [1] "optaporat= 13.0959296291486" [1] "Amp = -4.8081" [1] "r^2= 0.905" [1] "sd= 19.84" [1] "Recalculating 1-sec O2 interpolated values" [1] "Recalculating 10-sec O2 medians" [1] "Outputting data files" [1] "Plotting intervals" [1] "Excluding 2 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 2 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 2 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 2 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 2 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "Excluding 2 interpolated O2 values from O2 vs. CO2 plot for tdiff>5" [1] "making html" [1] "making index html"