[1] "2025-05-13 10:23:20 MDT" options [1,] "file" "080416a" [2,] "flight" "TF03" [3,] "project" "START08" [4,] "png" "TRUE" [5,] "valveskip" "60" [6,] "wtwtco" "200" [7,] "spspco" "500" [8,] "o2gco" "500" [9,] "co2gco" "50" [10,] "hr" "TRUE" [11,] "newskip" "0" [12,] "recalcpd" "TRUE" [13,] "mrgdir" "/scr/raf/stephens/HUMERGE" [14,] "datdir" "/scr/raf/stephens/AO2DAT" [15,] "netdir" "/net/www/docs/homes/stephens/AO2" [16,] "acdatdir" "/scr/raf/Prod_Data" [17,] "logfile" "TRUE" [18,] "uwyoflag" "none" [19,] "tlagff0" "7" [20,] "tlagff1" "0" [21,] "tlagopt" "TRUE" [22,] "useoptlag" "FALSE" [23,] "optto" "oms" [24,] "acavail" "FALSE" [25,] "huavail" "FALSE" [26,] "vxavail" "FALSE" [27,] "usetlagcalc" "TRUE" [28,] "inlet" "himl" [29,] "pcabcorr" "FALSE" [30,] "pcabforce" "ave,ave" [31,] "pcabfiltfirst" "TRUE" [32,] "pao2corr" "FALSE" [33,] "pao2force" "ave,ave" [34,] "pao2filtfirst" "TRUE" [35,] "tpboxcorr" "FALSE" [36,] "tpboxforce" "ave,ave" [37,] "tpboxfiltfirst" "TRUE" [38,] "inpcorr" "TRUE" [39,] "inpopt" "FALSE" [40,] "inpvals" "46,17,6" [41,] "inpsteps" "2,2,2" [42,] "actype" "nc2asc" [43,] "outputdesc" "250508" [44,] "readmergenew" "FALSE" [45,] "c13cor" "TRUE" [46,] "outdir" "." [47,] "co2caltype" "posttoonly" [48,] "o2caltype" "posttoonly" [49,] "lih2oco" "-10" [50,] "nasasmth" "FALSE" [51,] "o2slpcorr" "FALSE" [52,] "co2slpcorr" "FALSE" [53,] "co2usewt" "TRUE" [54,] "skipeffects" "FALSE" [55,] "hrlinredo" "FALSE" [56,] "jogsdfilt" "FALSE" [57,] "jogsdfact" "2" [58,] "use120sec" "FALSE" [59,] "lowerdec" "TRUE" [60,] "agg10sec" "FALSE" [61,] "plotxsect" "FALSE" [62,] "reavecals" "FALSE" [63,] "locate" "FALSE" [64,] "icartt" "0" [65,] "icarttrev" "0" [66,] "mmsrev" "TRUE" [67,] "usespline" "4pt" [68,] "updnave" "080416a" [1] "Reading in flight and plotting intervals" Read 5 records [1] "Reading in /scr/raf/stephens/AO2DAT/080416a.mr" Read 2691 records [1] "Converting statout" [1] "Median(diff(mrdata$time) = 2.59 seconds" [1] "Median(diff(mrdata$time,lag=240)/240) = 2.68 seconds" [1] "New JOGEST = 2.68 seconds" [1] "New VALVE SKIP = 22 jogs" [1] "Reading in /scr/raf/stephens/AO2DAT/080416a.hr" Read 10769 records [1] "HR FILE LENGTH NOT NSWITCH * MRDATA FILE LENGTH" [1] 2691 10766 [1] "HR FILE LENGTH NOT MULTIPLE OF NSWITCH" [1] 2691 10766 [1] "Converting hrdata statout" [1] "Tue May 13 10:23:20 AM MDT 2025 done" [1] "Reading in cylinder log" Read 2575 records [1] "Finding cylinder IDs" Read 1 record Read 536 records [1] "position 1 cylinder OK30055 description: HS CO2 = 352.79 O2 = -208.9" [1] "position 2 cylinder OK30057 description: LS CO2 = 408.13 O2 = -495.2" [1] "position 3 cylinder OK30053 description: LT CO2 = 405.47 O2 = -336.6" [1] "position 4 cylinder OK170199 description: WT CO2 = 369.31 O2 = -525.2" [1] 352.7886 408.1277 405.4689 369.3087 NA [1] -208.9257 -495.1843 -336.6443 -525.1814 NA [1] "Nominal linear calibrations:" [1] "co2scl = 1.034 co2off = -7.19 o2scla = -0.181 o2offa = -110.9" [1] "(dV/V)/(dXO2/XO2) = -1.154" [1] "(dV/V)/d(O2/N2) = -0.912" [1] "Reading in very high resolution timeseries" Read 53820 records [1] 53820 [1] "VHR FILE MATCHES" [1] "Recalculating pdo2 and pdref corrections" [1] "Tue May 13 10:23:20 AM MDT 2025 done approxing mr variables" [1] "Tue May 13 10:23:21 AM MDT 2025 done undoing flight corrections" [1] "o2scaleavenew = -0.912" [1] "o2scaleavenew_drelVdrelP = -1.154" [1] "median(o2scalenew) = -0.907" [1] "Empirical dV/V vs dP/P relationship =-1.297, r^2 =0.061, damping =1.124" [1] "Tue May 13 10:23:21 AM MDT 2025 done redoing corrections" [1] "JOGAVES MATCHES" [1] "Plotting Jog Shapes" [1] "Tue May 13 10:23:25 AM MDT 2025 done recreating mr" [1] "Using SPLINE interpolation between jogs" [1] "MAX RECALC TIME DIFFERENCE 9318335.26032 SECONDS" [1] "Tue May 13 10:23:25 AM MDT 2025 done recreating mr o2diffs" [1] "Removed 5 medium-rate record(s) with accumulation errors" [1] "O2 SCALE ESTIMATE CHANGED BY MORE THAN 10% IN FLIGHT" [1] 1.4263 2.0329 [1] -1.301129 -0.650913 [1] "Screening 0 MR O2 values when lamp off" [1] "Screening 0 HR O2 values when lamp off" [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 109.379 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 97.02 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 74.101 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -23.47 PER MEG" [1] "Removing O2 and CO2 glitches" [1] 0 [1] 3 [1] 14 [1] 14 [1] 14 [1] "O2 glitches (based on SP-SP, WT-WT, or single jog spikes or steps) found at (row, time, o2diff, o2jog, posneg):" [,1] [,2] [,3] [,4] [,5] [1,] 79 107.8087 -592.06061 1013227.2 -1 [2,] 149 107.8108 -268.31250 1012853.3 -1 [3,] 467 107.8203 -374.71904 1009197.8 -1 [4,] 543 107.8225 -378.35687 1008951.0 -1 [5,] 929 107.8345 -277.88621 1005742.3 -1 [6,] 935 107.8347 -438.41158 1005459.2 -1 [7,] 1005 107.8369 -210.41250 1004810.6 -1 [8,] 1399 107.8490 -272.69679 998904.6 -1 [9,] 1954 107.8672 -213.61275 992319.8 -1 [10,] 2410 107.8814 -79.71797 989731.0 -1 [11,] 2418 107.8817 -399.65191 989367.8 -1 [12,] 2626 107.8878 -83.58549 987146.0 -1 [13,] 2627 107.8878 238.66433 987202.9 1 [14,] 2628 107.8878 586.03471 987803.8 -1 [1] "CO2 glitches found at:" [,1] [,2] [,3] [1,] 1768 107.8611 301.340 [2,] 2582 107.8866 272.131 [1] "MAX O2 DIFFERENCE (ORIG-UNCORR) 109.379 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDCORR) 97.02 PER MEG" [1] "MAX O2 DIFFERENCE (ORIG-PDPRCORR) 74.101 PER MEG" [1] "MAX O2 DIFFERENCE (PDCORR-PDPRCORR) -23.47 PER MEG" [1] 352.7886 408.1277 405.4689 369.3087 NA [1] -208.9257 -495.1843 -336.6443 -525.1814 NA [1] "Nominal linear calibrations:" [1] "co2scl = 1.034 co2off = -7.19 o2scla = -0.182 o2offa = -114.1" [1] "(dV/V)/(dXO2/XO2) = -1.152" [1] "(dV/V)/d(O2/N2) = -0.911" [1] "Finding cal and sample periods" [1] "Median Cal: 3.05 minutes" [1] "Average Cal: 4.03 minutes" [1] "Shortest Cal: 2.83 minutes" [1] "Longest Cal: 17.92 minutes" [1] "Not reading in any aircraft data" [1] "Plotting CO2 cabin P sensitivity" [1] "HS+LS CO2 vs. PACAB: m = -0.00536" [1] "HS CO2 vs. PACAB: m = 0.0397, r^2 = 0.99" [1] "LS CO2 vs. PACAB: m = -0.0504, r^2 = 0.39" [1] "HS+LS LIH2O vs. PACAB: m = 0.0127" [1] "HS LIH2O vs. PACAB: m = -0.0133, r^2 = 0.04" [1] "LS LIH2O vs. PACAB: m = 0.0388, r^2 = 0.12" [1] "HS+LS CO2 vs. LIH2O: m = -0.428" [1] "HS CO2 vs. LIH2O: m = -0.2, r^2 = 0.11" [1] "LS CO2 vs. LIH2O: m = -0.655, r^2 = 0.99" [1] "APCO2 vs. PACAB: m = -3.47, r^2 = 0.19" [1] "Plotting O2 cabin P, H2O, PaO2, and TPBox sensitivity" [1] "HS+LS O2 vs. PACAB: m = -6.65" [1] "HS O2 vs. PACAB: m = -17.2, r^2 = 0.77" [1] "LS O2 vs. PACAB: m = 3.94, r^2 = 0.26" [1] "HS+LS O2 vs. LIH2O: m = 2.9" [1] "HS O2 vs. LIH2O: m = -70.7, r^2 = 0.06" [1] "LS O2 vs. LIH2O: m = 76.5, r^2 = 0.31" [1] "HS+LS O2 vs. PAO2: m = -0.827" [1] "HS O2 vs. PAO2: m = -3.13, r^2 = 0.11" [1] "LS O2 vs. PAO2: m = 1.47, r^2 = 0.35" [1] "HS+LS O2 vs. TPBOX: m = -0.069" [1] "HS O2 vs. TPBOX: m = -4.65, r^2 = 0.11" [1] "LS O2 vs. TPBOX: m = 4.51, r^2 = 0.44" [1] "APO vs. PACAB: m = 17.2, r^2 = 0.19" [1] "APO vs. PAO2: m = 0.643, r^2 = 0" [1] "APO vs. TPBOX: m = 24.6, r^2 = 0.08" [1] "Plotting cal meas P and T sensitivity" [1] "HS CO2 vs. LiCor Cell P: m = -0.243, r^2 = 0.44" [1] "LS CO2 vs. LiCor Cell P: m = 0.133, r^2 = 0.11" [1] "HS CO2 vs. CO2 Vol P: m = -0.0065, r^2 = 0.05" [1] "LS CO2 vs. CO2 Vol P: m = -0.00962, r^2 = 0.13" [1] "HS CO2 vs. SLOPE: m = 0.158, r^2 = 0.21" [1] "LS CO2 vs. SLOPE: m = 0.777, r^2 = 0.89" [1] "HS O2 vs. O2 Vol P: m = 3.87, r^2 = 0.01" [1] "LS O2 vs. O2 Vol P: m = 0.367, r^2 = 0" [1] "HS O2 vs. O2 Cell T: m = 1.46, r^2 = 0.28" [1] "LS O2 vs. O2 Cell T: m = -0.173, r^2 = 0.01" [1] "HS O2 vs. CO2 Vol P: m = 16.6, r^2 = 0.48" [1] "LS O2 vs. CO2 Vol P: m = 5.34, r^2 = 0.1" [1] "HS O2 vs. O2 Vol P / O2 Cell T: m = -64.3, r^2 = 0.01" [1] "LS O2 vs. O2 Vol P / O2 Cell T: m = -201, r^2 = 0.92" [1] "HS O2 vs. CO2 Vol P / O2 Cell T: m = 16.6, r^2 = 0.48" [1] "LS O2 vs. CO2 Vol P / O2 Cell T: m = 5.34, r^2 = 0.1" [1] "HS O2 vs. LIH2O: m = -413, r^2 = 0.78" [1] "LS O2 vs. LIH2O: m = -63.8, r^2 = 0.04" [1] "HS O2 vs. SLOPE: m = -2.75, r^2 = 0.64" [1] "LS O2 vs. SLOPE: m = -4.9, r^2 = 0.86" [1] "HS CO2 vs. Time: m = 1.897, r^2 = 0.55" [1] "LS CO2 vs. Time: m = 2.796, r^2 = 0.84" [1] "HS CO2 vs. Cylinder T: m = 0.855, r^2 = 0.28" [1] "LS CO2 vs. Cylinder T: m = -0.355, r^2 = 0.075" [1] "HS CO2 vs. Regulator T: m = -0.134, r^2 = 0.1" [1] "LS CO2 vs. Regulator T: m = -0.068, r^2 = 0.052" [1] "HS CO2 vs. Ref. Volumes T: m = 0, r^2 = 0" [1] "LS CO2 vs. Ref. Volumes T: m = 0, r^2 = 0.026" [1] "HS CO2 vs. Manifold T: m = -0.001, r^2 = 0.15" [1] "LS CO2 vs. Manifold T: m = -0.001, r^2 = 0.095" [1] "HS CO2 vs. Pump Box T: m = -0.016, r^2 = 0.12" [1] "LS CO2 vs. Pump Box T: m = -0.033, r^2 = 0.701" [1] "HS O2 vs. Cylinder T: m = -585.78, r^2 = 0.19" [1] "LS O2 vs. Cylinder T: m = -209.816, r^2 = 0.065" [1] "HS O2 vs. Regulator T: m = 249.349, r^2 = 0.49" [1] "LS O2 vs. Regulator T: m = 14.531, r^2 = 0.006" [1] "HS O2 vs. Ref. Volumes T: m = 1.062, r^2 = 0.16" [1] "LS O2 vs. Ref. Volumes T: m = 0.196, r^2 = 0.012" [1] "HS O2 vs. Manifold T: m = 2.156, r^2 = 0.51" [1] "LS O2 vs. Manifold T: m = -0.136, r^2 = 0.007" [1] "HS O2 vs. Pump Box T: m = 21.424, r^2 = 0.31" [1] "LS O2 vs. Pump Box T: m = 19.589, r^2 = 0.612" [1] "HS CO2 vs. WT P: m = 0.015, r^2 = 0.51" [1] "LS CO2 vs. WT P: m = -0.009, r^2 = 0.465" [1] "HS CO2 vs. SP P: m = 0.0104, r^2 = 0.57" [1] "HS CO2 vs. PACAB comb with SP P: m = 0.033, r^2 = 0.97" [1] "HS CO2 vs. SP P comb with PACAB: m = 0.005, r^2 = 0.97" [1] "LS CO2 vs. SP P: m = -0.00618, r^2 = 0.49" [1] "LS CO2 vs. PACAB comb with SP P: m = -0.034, r^2 = 0.65" [1] "LS CO2 vs. SP P comb with PACAB: m = -0.002, r^2 = 0.65" [1] "HS CO2 vs. WT FL: m = 0, r^2 = 0" [1] "LS CO2 vs. WT FL: m = -0.008, r^2 = 0.216" [1] "HS CO2 vs. SP FL: m = -0.007, r^2 = 0.1" [1] "LS CO2 vs. SP FL: m = -0.008, r^2 = 0.185" [1] "HS O2 vs. SLPDIFF: m = 2.913, r^2 = 0.95" [1] "LS O2 vs. SLPDIFF: m = 1.6, r^2 = 0.919" [1] "HS O2 vs. WT P: m = -7.844, r^2 = 0.19" [1] "LS O2 vs. WT P: m = 0.505, r^2 = 0.004" [1] "HS O2 vs. SP P: m = -7.596, r^2 = 0.26" [1] "LS O2 vs. SP P: m = -0.821, r^2 = 0.02" [1] "HS O2 vs. WT FL: m = 9.34, r^2 = 0.24" [1] "LS O2 vs. WT FL: m = 0.786, r^2 = 0.005" [1] "HS O2 vs. SP FL: m = 14.407, r^2 = 0.52" [1] "LS O2 vs. SP FL: m = 1.61, r^2 = 0.018" [1] "Plotting calibration shapes" [1] "Plotting calibration sds and slopes (and running sds)" [1] "Median all cal CO2 SD = 0.25" [1] "Median all HS CO2 SD = 0.25" [1] "Median all LS CO2 SD = 0.25" [1] "Median all LT CO2 SD = 0.26" [1] "Median all WT CO2 SD = 7" [1] "Median all HS or LS CO2 SD = 0.25" [1] "Median all cal O2 SD = 13.89" [1] "Median all HS O2 SD = 12.04" [1] "Median all LS O2 SD = 14.32" [1] "Median all LT O2 SD = 12.78" [1] "Median all WT O2 SD = 22.61" [1] "Median all HS or LS O2 SD = 13.89" [1] "Median all cal CO2 Slope = 0.01" [1] "Median all HS CO2 Slope = -0.03" [1] "Median all LS CO2 Slope = -0.01" [1] "Median all LT CO2 Slope = 0.03" [1] "Median all WT CO2 Slope = 1.86" [1] "Median all HS or LS CO2 Slope = -0.02" [1] "Median all cal O2 Slope = 5.42" [1] "Median all HS O2 Slope = 6.9" [1] "Median all LS O2 Slope = 7.91" [1] "Median all LT O2 Slope = -5.44" [1] "Median all WT O2 Slope = -17.63" [1] "Median all HS or LS O2 Slope = 7.03" [1] "Plotting calibration fits" [1] "Plotting calibration parameters" [1] "SD of O2 Calibration = 51.02 per meg" [1] "Initial O2 Calibration Offset = 117.56 per meg" [1] "Plotting all variables" [1] "Plotting calibration data" [1] "using original START-08 inlet volumes" [1] "before any lag: 69647.39 76848.31" [1] "Time lag adjustments = 7 + 0 * P/Flow seconds" [1] "Median CO2 delay + tlagff = 88.4 at 144.7 sccm" [1] "Median O2 delay + tlagff = 89.7 at 144.7 sccm" [1] "For comparison to empirical LP lag times:" [1] "Median CO2 delay from 3-way + tlagff = 62.6 at 144.7 sccm" [1] "Median O2 delay from 3-way + tlagff = 63.9 at 144.7 sccm" [1] "after calc and ff lag: 69560.92 76760.52" [1] "2025-05-13 10:23:33 MDT" [1] "Screened 4 1-Hz values because of data gaps at:" [1] 107.8501 107.8501 107.8501 107.8639 [1] "Plotting aircraft data" [1] "Outputting data files" [1] "Plotting intervals" [1] "making html" [1] "making index html"